Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0002150 | OGI:07005330 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:2096360-2100989 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtctcgtcttctctcctcgcctcgcctcgtcgccacctccacccccacgcgccgcagtcaactcctccccccaccccacctacgcatttcggcgaacacctcgcctccatggcggcgccgcggtgagtagacgaagcaggcatctcatctcccatcccatggcgctgcgggcgcggttgaggcggttgctggtggtggtgatcctcgtcgtggtggaggtggtggtggcgcagcagcagcagcaggagaggttggcgtcggggtcggatttggcggggctgttcagcctgcgggcgtcgctggggatacgggcgagggagtggccggcgagggtggacccgtgcggtggcgggtgggccggggtcacctgccgcggggggcgcgtcgtcggggtcaccgtcgccgggttccgccgcacgcgggtgggcgcacgggcgccgaggttcgccgtcgacggggtgaggaacctcacggcgctggaggtgttcaatgcctccgggttcccgctcccgggggagatgccggcgtggttcgggcgcggcctcccgccgccgctcgccgtgctcgacctccgctccgccgcggtcaatggcacgctcccgcccgatctcggcgtgtcagggaacctcacgagcttgctcctctcgggaaacagcctctccggcgccgtgccggggtcgctgctgtctgtcgccgggcttcggtttcttgacctctccggcaacaatttcaccggcgggctgccgaatgtcacccccgtcgccggtggtggagccgcctcgctgttcaacgtttctgggaattcgctgtatggtgtggtcagcgatgccattggggccctcaaggggaggttccaggtggtggacctgtcaagcaactacttcgatggggtttggaatgtgtctgatggaaatgtagatgttaggatgaattgcttctccggtgcgccaggtcagcgcaaccgtgttgattgtgaagagttctataggagggcaggggtgaggtttggtgatgctctagctcccgcaccttcaccggagacatcaccggggacgacgacgaagaataataacagtaggatatccaagggtgtactgattggagttattgctgccgcggcaacgctgatggttgtgttttttggtgcattggtattctgcttggcaaggcagaaggcgggaagaagaagcgtgcgcgggagaggggtggatacaaatgaggaaagcacacgtggcgtgcgcaggagggatagtagtgtaaacccggtgacatcaccaccagtagcagtgtccccaagtgccaattctggacataaggatccggttgtcgtttccggtgaatttacctttgagcagttggtccatgccacaggcgggtttggagatgacaacctcctcaagcatgggcactctggggatatttaccatggtgtctttgagagtggatcccaggttgttgtcaagaaggtcaacgcacagagcgtcaacaagcatgcaggtgaattggacttctataaaatgtattcccatgagaggattgttccgttgctcggacatttggcaaaggatgaagaggaatttatggcttacaagtatatgcctaagggggacttgaccaatgcattgcacaagaaacctgtggacacagaagatggcttgccatcattggattggataacaagactgaagattgcaacaggtgtggctgaggccatgtgcttccttcacgatgagtgccgcccgccattagtccacaggtaattccgtattctatatgatccacaggcatctaagaaattcatttgctacaccatgtaatatcctattggttagtgcaccctaatattggccgttctgtcctaatttaatttggttcatagttgagagaattattgatggctcacatgccttattttttattaagttgtagccgtactaatggtgtaagttatgtcaaaggcgggaacgatataagaccagtgaagtagaagaagtgtctaattgaaattgaattgtttgatttgtgatttctgtggctcctcagtgtggttgctgtgcctttcttggacttatttactcagcggtttacttcatatttcattgaggcacttttttactcaagagcgaatcttgcatatgaaaattcttttggtgataaattattcataggcctggacaaaaatatcatgcttggagacttgaatatgatttatctgtgcatgttgtgtcgttgcctagaagcattgacccactgtaattaaaagtatacattttgatatgacttgtcattttcggtaaccttattggtactataaaatgtttgttagtttgtttctctttccgcattcgatatatttgtttgtgtctctttcttcattcagttatgcgttctaacgatttgaaaccacatatggtttctttttactagtgatcaactataacaagttcccaagtctctatcaaagctttagatgcgcattcaatattctacttgtatagtgttctgtgtatgtcatcaacaattccaggaaaatttaggtttggttcttttgacataactggtagtggtcataatttttttcccacttgcctgtcttaatttctttgtttttgctgtcttatgttacttttttatctaggaaattttttatcagtaggtcagctcaacttttctgattcaataagccttacctccaagttgatacatgttttgcatacctcaatcttctctgacattatgttcacattgttatttattatgttgtgatttcttcaattgtaatcacagagatatccaagcaactagcgttcttcttgatgataaatttgaagtgcgacttgggagtatgagtgatgtatgtgcccagcaaagtgggggaagccagagtgtcttctctcggttgttgagatcatcaaggtatgattatgacctgtcatgggcgagaatgagaaaaactacacttattgatggctgaatgtggtggttttacaatttttgaattctcgtaatcactggtgaccgaatttgatggttttgcccctctttttttttttctgaatttgtattttaaatttggaaacaacataaacataaaattgaaggtaagagaaacagcaacagtagtattgatagatcatggatgatcctatgtagagaatgcagttccctactttccttactattgcatttttttaaaaaataaaaataaaaagggtaaataacagaagagaccaacctggttcgaaccagtgacctcagtcaaaatactctaccattgagctatggaaatggaactgttgatccttattaacgtaattttccttttgggttcacttgggtttacactagtactgatgtaattgctgtttgttttctcattcctcgctgtttacaacttgaattccgtaattaatctgagagaatagcagagaactctgcagctatctgagtttctatcttgttggatggtacaccaagaatatgtgcctgctcaaaaaaaaaaagtaagaatatgtgcaccaaggggttggtgattatagataacctaaaatgttattttattttctatgctgattgcatgctagttggtatttggtagttcaatgttccgagcacacacacctacttccttctaatcctgttgtcttttagttgagcaaacttccatctttatctgcctgaaacgagtcacatctttctgaaaacttttgtttactgctaactaaagctcctaactgacaatgatatttggttctttcttgtggcaggtcgcttgataagaacatatcaggtacataaatcttatacatggctatttattaccactctaattctgtggttcatgtacatgcgcacaagtttcatggttaacattcccttctgcattttttacatgacaggcccaccagcaacttgttcttatgatgtttactgctttggaaaggtgatgcttgaactagtaacaggcaactttggtgtaagtggatcaaacgatgctgcctccgaagagtggatgacaaacacactaaaccgcatcgacatgaacgacaaggagagcatttctaggatcatcgatcctttgcttattgtcgacgaggatcatctcgaagaggtgtgggccatggcaatcgtcgcgaagacatgcctgaattcaaagccatcaaggcggccttctgctcggtacgtcctgagagccctggagaacccgctaaagattctgcgaatggcgtcccgctccaattcagcaagactcaggagctcatcatcccggagctcctggcagtctgctttccttcaaggaaaccggtaccagagccttgaaaccgcgtcgtcgtcagggcaaatgcttgacaggaaacattcaactagatcacatggaagcggaggagagacttccttctccttcaagagggcttccagggagattgctccggagccagaagggttcgaggagaatgttgtcgtgtagaactgaaattacaccgattctttcgaagaatttgtgattcattcatacctgtgtataatctgatcttctgatgagcatgattcggggtctcgaagtgagaattgtgcatatagagaagttttcggggtttttatttctcTttttttttccttcatatgttgg
More
|
||||||||||
| CDS seq | atggcgctgcgggcgcggttgaggcggttgctggtggtggtgatcctcgtcgtggtggaggtggtggtggcgcagcagcagcagcaggagaggttggcgtcggggtcggatttggcggggctgttcagcctgcgggcgtcgctggggatacgggcgagggagtggccggcgagggtggacccgtgcggtggcgggtgggccggggtcacctgccgcggggggcgcgtcgtcggggtcaccgtcgccgggttccgccgcacgcgggtgggcgcacgggcgccgaggttcgccgtcgacggggtgaggaacctcacggcgctggaggtgttcaatgcctccgggttcccgctcccgggggagatgccggcgtggttcgggcgcggcctcccgccgccgctcgccgtgctcgacctccgctccgccgcggtcaatggcacgctcccgcccgatctcggcgtgtcagggaacctcacgagcttgctcctctcgggaaacagcctctccggcgccgtgccggggtcgctgctgtctgtcgccgggcttcggtttcttgacctctccggcaacaatttcaccggcgggctgccgaatgtcacccccgtcgccggtggtggagccgcctcgctgttcaacgtttctgggaattcgctgtatggtgtggtcagcgatgccattggggccctcaaggggaggttccaggtggtggacctgtcaagcaactacttcgatggggtttggaatgtgtctgatggaaatgtagatgttaggatgaattgcttctccggtgcgccaggtcagcgcaaccgtgttgattgtgaagagttctataggagggcaggggtgaggtttggtgatgctctagctcccgcaccttcaccggagacatcaccggggacgacgacgaagaataataacagtaggatatccaagggtgtactgattggagttattgctgccgcggcaacgctgatggttgtgttttttggtgcattggtattctgcttggcaaggcagaaggcgggaagaagaagcgtgcgcgggagaggggtggatacaaatgaggaaagcacacgtggcgtgcgcaggagggatagtagtgtaaacccggtgacatcaccaccagtagcagtgtccccaagtgccaattctggacataaggatccggttgtcgtttccggtgaatttacctttgagcagttggtccatgccacaggcgggtttggagatgacaacctcctcaagcatgggcactctggggatatttaccatggtgtctttgagagtggatcccaggttgttgtcaagaaggtcaacgcacagagcgtcaacaagcatgcaggtgaattggacttctataaaatgtattcccatgagaggattgttccgttgctcggacatttggcaaaggatgaagaggaatttatggcttacaagtatatgcctaagggggacttgaccaatgcattgcacaagaaacctgtggacacagaagatggcttgccatcattggattggataacaagactgaagattgcaacaggtgtggctgaggccatgtgcttccttcacgatgagtgccgcccgccattagtccacagagatatccaagcaactagcgttcttcttgatgataaatttgaagtgcgacttgggagtatgagtgatgtatgtgcccagcaaagtgggggaagccagagtgtcttctctcggttgttgagatcatcaaggtcgcttgataagaacatatcaggcccaccagcaacttgttcttatgatgtttactgctttggaaaggtgatgcttgaactagtaacaggcaactttggtgtaagtggatcaaacgatgctgcctccgaagagtggatgacaaacacactaaaccgcatcgacatgaacgacaaggagagcatttctaggatcatcgatcctttgcttattgtcgacgaggatcatctcgaagaggtgtgggccatggcaatcgtcgcgaagacatgcctgaattcaaagccatcaaggcggccttctgctcggtacgtcctgagagccctggagaacccgctaaagattctgcgaatggcgtcccgctccaattcagcaagactcaggagctcatcatcccggagctcctggcagtctgctttccttcaaggaaaccggtaccagagccttgaaaccgcgtcgtcgtcagggcaaatgcttgacaggaaacattcaactagatcacatggaagcggaggagagacttccttctccttcaagagggcttccagggagattgctccggagccagaagggttcgaggagaatgttgtcgtgtag
More
|
||||||||||
| Protein seq | MALRARLRRLLVVVILVVVEVVVAQQQQQERLASGSDLAGLFSLRASLGIRAREWPARVDPCGGGWAGVTCRGGRVVGVTVAGFRRTRVGARAPRFAVDGVRNLTALEVFNASGFPLPGEMPAWFGRGLPPPLAVLDLRSAAVNGTLPPDLGVSGNLTSLLLSGNSLSGAVPGSLLSVAGLRFLDLSGNNFTGGLPNVTPVAGGGAASLFNVSGNSLYGVVSDAIGALKGRFQVVDLSSNYFDGVWNVSDGNVDVRMNCFSGAPGQRNRVDCEEFYRRAGVRFGDALAPAPSPETSPGTTTKNNNSRISKGVLIGVIAAAATLMVVFFGALVFCLARQKAGRRSVRGRGVDTNEESTRGVRRRDSSVNPVTSPPVAVSPSANSGHKDPVVVSGEFTFEQLVHATGGFGDDNLLKHGHSGDIYHGVFESGSQVVVKKVNAQSVNKHAGELDFYKMYSHERIVPLLGHLAKDEEEFMAYKYMPKGDLTNALHKKPVDTEDGLPSLDWITRLKIATGVAEAMCFLHDECRPPLVHRDIQATSVLLDDKFEVRLGSMSDVCAQQSGGSQSVFSRLLRSSRSLDKNISGPPATCSYDVYCFGKVMLELVTGNFGVSGSNDAASEEWMTNTLNRIDMNDKESISRIIDPLLIVDEDHLEEVWAMAIVAKTCLNSKPSRRPSARYVLRALENPLKILRMASRSNSARLRSSSSRSSWQSAFLQGNRYQSLETASSSGQMLDRKHSTRSHGSGGETSFSFKRASREIAPEPEGFEENVVV |
||||||||||
| Function | Probable LRR receptor-like serine/threonine-protein kinase At2g16250 [UniProtKB/Swiss-Prot:C0LGK4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0002150 | OsLima_07g0002150.01 | Chr07 | 2096360 | 2100989 | + | NAM | ||
| CDS seq | atggcgctgcgggcgcggttgaggcggttgctggtggtggtgatcctcgtcgtggtggaggtggtggtggcgcagcagcagcagcaggagaggttggcgtcggggtcggatttggcggggctgttcagcctgcgggcgtcgctggggatacgggcgagggagtggccggcgagggtggacccgtgcggtggcgggtgggccggggtcacctgccgcggggggcgcgtcgtcggggtcaccgtcgccgggttccgccgcacgcgggtgggcgcacgggcgccgaggttcgccgtcgacggggtgaggaacctcacggcgctggaggtgttcaatgcctccgggttcccgctcccgggggagatgccggcgtggttcgggcgcggcctcccgccgccgctcgccgtgctcgacctccgctccgccgcggtcaatggcacgctcccgcccgatctcggcgtgtcagggaacctcacgagcttgctcctctcgggaaacagcctctccggcgccgtgccggggtcgctgctgtctgtcgccgggcttcggtttcttgacctctccggcaacaatttcaccggcgggctgccgaatgtcacccccgtcgccggtggtggagccgcctcgctgttcaacgtttctgggaattcgctgtatggtgtggtcagcgatgccattggggccctcaaggggaggttccaggtggtggacctgtcaagcaactacttcgatggggtttggaatgtgtctgatggaaatgtagatgttaggatgaattgcttctccggtgcgccaggtcagcgcaaccgtgttgattgtgaagagttctataggagggcaggggtgaggtttggtgatgctctagctcccgcaccttcaccggagacatcaccggggacgacgacgaagaataataacagtaggatatccaagggtgtactgattggagttattgctgccgcggcaacgctgatggttgtgttttttggtgcattggtattctgcttggcaaggcagaaggcgggaagaagaagcgtgcgcgggagaggggtggatacaaatgaggaaagcacacgtggcgtgcgcaggagggatagtagtgtaaacccggtgacatcaccaccagtagcagtgtccccaagtgccaattctggacataaggatccggttgtcgtttccggtgaatttacctttgagcagttggtccatgccacaggcgggtttggagatgacaacctcctcaagcatgggcactctggggatatttaccatggtgtctttgagagtggatcccaggttgttgtcaagaaggtcaacgcacagagcgtcaacaagcatgcaggtgaattggacttctataaaatgtattcccatgagaggattgttccgttgctcggacatttggcaaaggatgaagaggaatttatggcttacaagtatatgcctaagggggacttgaccaatgcattgcacaagaaacctgtggacacagaagatggcttgccatcattggattggataacaagactgaagattgcaacaggtgtggctgaggccatgtgcttccttcacgatgagtgccgcccgccattagtccacagagatatccaagcaactagcgttcttcttgatgataaatttgaagtgcgacttgggagtatgagtgatgtatgtgcccagcaaagtgggggaagccagagtgtcttctctcggttgttgagatcatcaaggtcgcttgataagaacatatcaggcccaccagcaacttgttcttatgatgtttactgctttggaaaggtgatgcttgaactagtaacaggcaactttggtgtaagtggatcaaacgatgctgcctccgaagagtggatgacaaacacactaaaccgcatcgacatgaacgacaaggagagcatttctaggatcatcgatcctttgcttattgtcgacgaggatcatctcgaagaggtgtgggccatggcaatcgtcgcgaagacatgcctgaattcaaagccatcaaggcggccttctgctcggtacgtcctgagagccctggagaacccgctaaagattctgcgaatggcgtcccgctccaattcagcaagactcaggagctcatcatcccggagctcctggcagtctgctttccttcaaggaaaccggtaccagagccttgaaaccgcgtcgtcgtcagggcaaatgcttgacaggaaacattcaactagatcacatggaagcggaggagagacttccttctccttcaagagggcttccagggagattgctccggagccagaagggttcgaggagaatgttgtcgtgtag
More
|
|||||||
| Protein seq | MALRARLRRLLVVVILVVVEVVVAQQQQQERLASGSDLAGLFSLRASLGIRAREWPARVDPCGGGWAGVTCRGGRVVGVTVAGFRRTRVGARAPRFAVDGVRNLTALEVFNASGFPLPGEMPAWFGRGLPPPLAVLDLRSAAVNGTLPPDLGVSGNLTSLLLSGNSLSGAVPGSLLSVAGLRFLDLSGNNFTGGLPNVTPVAGGGAASLFNVSGNSLYGVVSDAIGALKGRFQVVDLSSNYFDGVWNVSDGNVDVRMNCFSGAPGQRNRVDCEEFYRRAGVRFGDALAPAPSPETSPGTTTKNNNSRISKGVLIGVIAAAATLMVVFFGALVFCLARQKAGRRSVRGRGVDTNEESTRGVRRRDSSVNPVTSPPVAVSPSANSGHKDPVVVSGEFTFEQLVHATGGFGDDNLLKHGHSGDIYHGVFESGSQVVVKKVNAQSVNKHAGELDFYKMYSHERIVPLLGHLAKDEEEFMAYKYMPKGDLTNALHKKPVDTEDGLPSLDWITRLKIATGVAEAMCFLHDECRPPLVHRDIQATSVLLDDKFEVRLGSMSDVCAQQSGGSQSVFSRLLRSSRSLDKNISGPPATCSYDVYCFGKVMLELVTGNFGVSGSNDAASEEWMTNTLNRIDMNDKESISRIIDPLLIVDEDHLEEVWAMAIVAKTCLNSKPSRRPSARYVLRALENPLKILRMASRSNSARLRSSSSRSSWQSAFLQGNRYQSLETASSSGQMLDRKHSTRSHGSGGETSFSFKRASREIAPEPEGFEENVVV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.027488 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0134600 | RBH | 0.000000 | 0.091278 | 0.217541 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g04220 | RBH | 0.000000 | 0.060035 | 0.218865 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0134600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0002100 | RBH | 0.142197 | 17.880796 | 0.887617 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0002090 | RBH | 0.0 | 9.764566 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0002000 | RBH | 0.583837 | 18.445400 | 0.795521 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0002100 | RBH | 0.000000 | 0.225642 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0002040 | RBH | 0.000000 | 11.029223 | 1.057969 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0030300 | RBH | 1.097395 | 5.0021105 | 2.999374 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0002100 | RBH | 0.0 | 1.223154 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0035000 | RBH | 1.7391615 | 5.5186965 | 6.4171935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0002370 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0002140 | RBH | 0.530235 | 33.901939 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0002130 | RBH | 0.0 | 4.670117 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0002220 | RBH | 0.411900 | 1.768099 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0002120 | RBH | 0.044055 | 8.652350 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G002220 | RBH | 0.089945 | 8.159931 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0002130 | RBH | 0.319404 | 18.369383 | 0.732471 |
