Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0001050 | OGI:07002230 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:865511-868354 | ||||||||
| Gene Symbol | prx98, Osprx98, POD1, OsPOD1 | ||||||||||
| DNA seq | gatctcggagaagacgtacatgatggtggtggtgatgaggcggcggatggcggcggcggcgatgctggtgctggtcgctatggcgggcggcgccaccgtgtgcgcggcgcagctccggcggaactactacgccggcgtgtgccccaacgtggagtccatcgtccgcggcgctgtggcgaggaaggtccaggagacgttcgccaccgtcggcgccaccgtgcggctcttcttccacgactgcttcgtcgacggctgcgacgcgtcggtggtggtcgcgtcggcagggaacaacacggcggagaaggaccaccccaacaacctctccctcgccggcgacggcttcgacaccgtcatcaaggccaaggccgccgtcgacgccgtgccgggatgccgcgaccgcgtctcctgcgccgacatcctcgccatggccaccagagacgccatcgcgctggtacgtgtactcccggtttgactttggtcaaagttaaacaactctgagtttgactaattttataaaaaatagtagtagtatttttaactcaagacaaatatattatgaaattttatttaattacagatttaatgaaactatactagtgttgtaaatattactacttctttctatagaattagacaaacttagagtagactaaaattaaaacgtcttgtaacctgaaacaggagacacgccacgtcaccatcaagatttatcatcatatatgtcgcataattaaccaaagttctaattaattttgctgagagatgtgtgtgtgtgtgtgtttgcatgggtacatatgcaaagaaagcgaatcttcatctgatcggaatcaatggtgtgcaggccggaggaccgtcgtacgcggtggagcttgggcggctggacgggctgagatcgacggcgagcagcgtcaacgggaggctgccgccgccgacgttcaacctcgaccagctcacggcgctcttcgccgccaacggcctctctcaggccgacatgatcgccctctccggtcagccacactagtcttcatcacttactgcaattaattagttatgaacagctcccatcaattaaacttaatcaaaatctttcgacgatggtttttcaatttttctcattcctctcgagggatgatcattgaaaaaattaagaaaatatatagatttatgagttatatactaacaaaggttaaattcgaaaataaattaaactgaatctagtattatgtatctatttttttatctcttagaaatcaaatatgtttgtggagtgaataacttatgttaatctatcttaTtttttttaaaaaaaactacgtacttaggtgacatataccctaaaaaaatgaaaacactttctcaaaataattatatcaattctttctggtcttccaagtgaaggcaactatattgataatatatcagtacatatctactcagtgactctgagaaatagccactaccaattactgattgcttgtgcttaatgattaggcaaccaattaattgcaaaagcaacttgttcatgtgtactaagtattatctcctacttaagcatagttactacatctcccatgcatgcatattgctagcttttgttgcatctgagaaagagataaaggcaaccagatctctgtagctaagtaaatattccctggcttgcacacaatccaactcctaccaaccatgcttgcctgtggttggaaccatctgctacaactgtacaaacaaccgtacaaatccttccatccatcgagatcactcgatcccaagcccatctctggaaaacagcccaacatgaagagacaaaactatgtgcttgcccatgagctgttttttttatagcaacatgccctgtcacgacattccgatttggacctactccctccatccttaaaaaaaaaagacaatctagaagaggacgtgtcatctgtccagattcgttaaattaggaggaatcatatcccctctttctctcctaggttgtcttttttttttacgaagggagtaggtagaatcgatttgagccactcagctgtcacatatctttacatactgtcactaaaataaaaaataaaaaaccgagatgtcacttcaccgattttcactggccaatatggtggacgcttcatccgcttgcgaaaatagattctaccccagtacaaacccgctttgtagtagtgtggtgttactcactgctacttcaaaaacctactgtatttttttgtatgtatacatttgacctcattgtcatgtcaaactatggtgcagcggggcacacggtggggttcgcacactgcaacacatttgcgggccggatccgtgggtcatcggtggatccaacgatgagcccaagatacgcggcccagctacagagatcgtgcccgcccaacgtggacccacggatcgccgtgaccatggacccggtgacgccgcgggccttcgacaaccagtacttcaagaacctgcagaacgggatgggccttctgggctctgaccaggtgctgtactcggacccacggtccaggcccatcgtggattcttgggcccagagcagcgccgccttcaaccaggcctttgtcacggctatgaccaagttgggccgggtcggggtcaagaccgggtcgcaaggcaacattcgtcgcaattgtgcagtgctcaattaattattaactgatgatcatctacatggttgttcttacactgagcttaattaatcttgtttttaaattattgctttcttttgcacaaatgtaaaggaaaaatgtaagaaaaattcaagccatatatagatgcatgtaaagtacaattaaaatggttggttatgaagttgtttgtggccgtgag
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| CDS seq | atctcggagaagacgtacatgatggtggtggtgatgaggcggcggatggcggcggcggcgatgctggtgctggtcgctatggcgggcggcgccaccgtgtgcgcggcgcagctccggcggaactactacgccggcgtgtgccccaacgtggagtccatcgtccgcggcgctgtggcgaggaaggtccaggagacgttcgccaccgtcggcgccaccgtgcggctcttcttccacgactgcttcgtcgacggctgcgacgcgtcggtggtggtcgcgtcggcagggaacaacacggcggagaaggaccaccccaacaacctctccctcgccggcgacggcttcgacaccgtcatcaaggccaaggccgccgtcgacgccgtgccgggatgccgcgaccgcgtctcctgcgccgacatcctcgccatggccaccagagacgccatcgcgctggccggaggaccgtcgtacgcggtggagcttgggcggctggacgggctgagatcgacggcgagcagcgtcaacgggaggctgccgccgccgacgttcaacctcgaccagctcacggcgctcttcgccgccaacggcctctctcaggccgacatgatcgccctctccgcggggcacacggtggggttcgcacactgcaacacatttgcgggccggatccgtgggtcatcggtggatccaacgatgagcccaagatacgcggcccagctacagagatcgtgcccgcccaacgtggacccacggatcgccgtgaccatggacccggtgacgccgcgggccttcgacaaccagtacttcaagaacctgcagaacgggatgggccttctgggctctgaccaggtgctgtactcggacccacggtccaggcccatcgtggattcttgggcccagagcagcgccgccttcaaccaggcctttgtcacggctatgaccaagttgggccgggtcggggtcaagaccgggtcgcaaggcaacattcgtcgcaattgtgcagtgctc
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| Protein seq | ISEKTYMMVVVMRRRMAAAAMLVLVAMAGGATVCAAQLRRNYYAGVCPNVESIVRGAVARKVQETFATVGATVRLFFHDCFVDGCDASVVVASAGNNTAEKDHPNNLSLAGDGFDTVIKAKAAVDAVPGCRDRVSCADILAMATRDAIALAGGPSYAVELGRLDGLRSTASSVNGRLPPPTFNLDQLTALFAANGLSQADMIALSAGHTVGFAHCNTFAGRIRGSSVDPTMSPRYAAQLQRSCPPNVDPRIAVTMDPVTPRAFDNQYFKNLQNGMGLLGSDQVLYSDPRSRPIVDSWAQSSAAFNQAFVTAMTKLGRVGVKTGSQGNIRRNCAVL |
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| Function | Peroxidase 51 [UniProtKB/Swiss-Prot:Q9SZE7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0001050 | OsLima_07g0001050.01 | Chr07 | 865557 | 868173 | + | NAM | ||
| CDS seq | atggcggcggcggcgatgctggtgctggtcgctatggcgggcggcgccaccgtgtgcgcggcgcagctccggcggaactactacgccggcgtgtgccccaacgtggagtccatcgtccgcggcgctgtggcgaggaaggccggaggaccgtcgtacgcggtggagcttgggcggctggacgggctgagatcgacggcgagcagcgtcaacgggaggctgccgccgccgacgttcaacctcgaccagctcacggcgctcttcgccgccaacggcctctctcaggccgacatgatcgccctctccgcggggcacacggtggggttcgcacactgcaacacatttgcgggccggatccgtgggtcatcggtggatccaacgatgagcccaagatacgcggcccagctacagagatcgtgcccgcccaacgtggacccacggatcgccgtgaccatggacccggtgacgccgcgggccttcgacaaccagtacttcaagaacctgcagaacgggatgggccttctgggctctgaccaggtgctgtactcggacccacggtccaggcccatcgtggattcttgggcccagagcagcgccgccttcaaccaggcctttgtcacggctatgaccaagttgggccgggtcggggtcaagaccgggtcgcaaggcaacattcgtcgcaattgtgcagtgctcaattaa
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| Protein seq | MAAAAMLVLVAMAGGATVCAAQLRRNYYAGVCPNVESIVRGAVARKAGGPSYAVELGRLDGLRSTASSVNGRLPPPTFNLDQLTALFAANGLSQADMIALSAGHTVGFAHCNTFAGRIRGSSVDPTMSPRYAAQLQRSCPPNVDPRIAVTMDPVTPRAFDNQYFKNLQNGMGLLGSDQVLYSDPRSRPIVDSWAQSSAAFNQAFVTAMTKLGRVGVKTGSQGNIRRNCAVLN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0001050 | OsLima_07g0001050.02 | Chr07 | 865511 | 868354 | + | IsoSeq | ||
| CDS seq | atctcggagaagacgtacatgatggtggtggtgatgaggcggcggatggcggcggcggcgatgctggtgctggtcgctatggcgggcggcgccaccgtgtgcgcggcgcagctccggcggaactactacgccggcgtgtgccccaacgtggagtccatcgtccgcggcgctgtggcgaggaaggtccaggagacgttcgccaccgtcggcgccaccgtgcggctcttcttccacgactgcttcgtcgacggctgcgacgcgtcggtggtggtcgcgtcggcagggaacaacacggcggagaaggaccaccccaacaacctctccctcgccggcgacggcttcgacaccgtcatcaaggccaaggccgccgtcgacgccgtgccgggatgccgcgaccgcgtctcctgcgccgacatcctcgccatggccaccagagacgccatcgcgctggccggaggaccgtcgtacgcggtggagcttgggcggctggacgggctgagatcgacggcgagcagcgtcaacgggaggctgccgccgccgacgttcaacctcgaccagctcacggcgctcttcgccgccaacggcctctctcaggccgacatgatcgccctctccgcggggcacacggtggggttcgcacactgcaacacatttgcgggccggatccgtgggtcatcggtggatccaacgatgagcccaagatacgcggcccagctacagagatcgtgcccgcccaacgtggacccacggatcgccgtgaccatggacccggtgacgccgcgggccttcgacaaccagtacttcaagaacctgcagaacgggatgggccttctgggctctgaccaggtgctgtactcggacccacggtccaggcccatcgtggattcttgggcccagagcagcgccgccttcaaccaggcctttgtcacggctatgaccaagttgggccgggtcggggtcaagaccgggtcgcaaggcaacattcgtcgcaattgtgcagtgctc
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| Protein seq | ISEKTYMMVVVMRRRMAAAAMLVLVAMAGGATVCAAQLRRNYYAGVCPNVESIVRGAVARKVQETFATVGATVRLFFHDCFVDGCDASVVVASAGNNTAEKDHPNNLSLAGDGFDTVIKAKAAVDAVPGCRDRVSCADILAMATRDAIALAGGPSYAVELGRLDGLRSTASSVNGRLPPPTFNLDQLTALFAANGLSQADMIALSAGHTVGFAHCNTFAGRIRGSSVDPTMSPRYAAQLQRSCPPNVDPRIAVTMDPVTPRAFDNQYFKNLQNGMGLLGSDQVLYSDPRSRPIVDSWAQSSAAFNQAFVTAMTKLGRVGVKTGSQGNIRRNCAVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr07 | 865694 | 866352 | + | OsLima_07g0001050.02 | OsLima_07g0001050.02,OsLima_07g0001050.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.277992 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0115300 | RBH | 0.0 | 0.0 | 1.084146 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g02440 | RBH | 0.0 | 0.0 | 0.272942 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0115300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001020 | RBH | 0.0 | 4.417730 | 1.990937 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0001050 | RBH | 0.238429 | 1.594097 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000980 | RBH | 0.0 | 5.780803 | 1.670117 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001000 | RBH | 0.0 | 0.023756 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001000 | RBH | 0.0 | 0.0 | 0.570587 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0014500 | RBH | 1.7759085 | 10.9443885 | 0.0293505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0001000 | RBH | 0.0 | 0.588124 | 0.043299 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0012300 | RBH | 5.216629 | 11.179108 | 0.092986 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035550 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001090 | RBH | 0.0 | 28.432751 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001080 | RBH | 0.0 | 7.757262 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0001160 | RBH | 0.000000 | 0.232553 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001020 | RBH | 0.148498 | 2.735883 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G001060 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001070 | RBH | 0.0 | 28.357082 | 1.625150 |
