Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0000530 | OGI:07001140 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:418229-423246 | ||||||||
| Gene Symbol | ALT-2 | ||||||||||
| DNA seq | cagccagcacaagtgacttgccaagcaacttgttcacagtatcaaaacatagaaatagttcgctactgcagccttacagacaggaccatgtatagtagactgtaaccggtgggtgcgcccgtattattcaattcccaaagagcagaaataattttatctatacatcatgcatatcaaggacaagaagttttttttttccttcagtagatcgagttacagattgttgcagcaaataattagcctttcgattgattgattaattaattaattaacagtgccttttaattataactgctcgatcagccacgctgaggcagattctttctctcttctcctggggtagtgctcatcttgttttcatttcacatcctggagtagccatcgtactgatccatgaaagtgtcgttgaacttcttgaagctggtcatgatggcaggcatgtcctcctcagctggcaggatggtcgtcctcaggtggaacaccctgcagtgcacaccaaccatgcatcagtttacttacttatatatacacacaaaaaatcgtcagtgatatcttttcagatttcctatcaagaagacaagtcagatgtatggttcaaatgctttctaccagtccttttggaagttagaaaacgcttaactgccaaataaatctaaaaatttgattggaaaggataaattcaggtactcctgagtcatgtctagttgagagatctctgatgtttatgaaactttgaagatacatatgtatatgtaagggaaacacctacccttctttttgtccgaaacctgaccctggaacagtggatattccagttgcttcaagaagcttgaggcagtagaaaacatcggccgctttgccagcccttttggctgcatctatagcttttggtggtaagcgtatttgggggaaagagtacatagctcctgcaacaacataattggaagagcattattagagaagctgcttcattttctcctattgccataaaggaaggggctcatatgttaatgtcaccttctgtgaaattgcagacaacatttcggcaactattgaaaccatctgtcatcaggcgtgctctcctcctcaaagactcgaggatagacttgctgcaacatcatcaggaggcacattatacatagaacactcgaaattactaccagaggaaataaatactgaataactgaatacccgtgtaggtcttcttttccttgaaaatgcagacatggattaaaatgatgagaagggaaagtatatacctttcagcagaaaacttcagataagagatatctccaggcttaggagggttaaccattaaacccatctgtaaatgacattaaaaccatttttattaacttgttaaagcaaagtaacataacttcaagaaaattagtacagttgcaactaaactgtttcaggaactaagaccacattgaataactctaacacaaaaagaaatgcatgtttgctattccttgtaaggctgtagcccacagagacatattttcaaggtgcagcattatatgctaataaagtaagccattgtgctcatcaccaacatatggactgaccaaataagggattatttagatgctctcatctattattgttgcaatccatggaaaaaaaatctggatatttttgggcatctcagggcaccgaaattttgagtaatgctccatggataaattaaggatatcatatttccagttttaaagcttgtggtttggccactggaagaacggaaagctgttttagataattgcacaaaaacaatgaatattgtttgacttacaaagatctgcccaggaacatttggactgagtgcgattgatgcaaccttgtagatctcgtctactgtctgtcatatgaaatgaggaacgtaattagatcacaagcaaacagaaaaatggtatctgtgctactatccaaacttcaaagtaaaatcttacattacatgatctataaccaatcttgtgcgagtgcttaatcttatctaaaagcttaatatttcaactgccaaaggctcttcaaaatttgtcaaacattaagtttacagtttggaaattggacaaacctaagagttgcaaacttgcaaactccagtttacgttgttcatactcaagtttctgagactgacaaagaccactctagtaagggaatatttcggtgcaacaaatgtaactacaccaacctagttagcaggatgggctactggattatattacatagttcaacatatacactattttactgtggaccaaatataacaacaagaaactagcatattctctattagactttgcaacatggcatgaagaatgtaacatcttttctagtatctgcatctacatttttgtgtagctgcattctataaatctatatagtaaagactagaaatttgaatcacgatcttttgagatcaatcacatattctataatggcatcaccttgggaggaagatttgtcatttcaaaataccctccacgttgtccacactccccccaatatccttttgacacagtatggaaagaaaccagctgaacttccctgctcataggaggacccatgtcaaacagaacctgaagaaattgagaaagtccatgttaacatcagcaatcagaatagtttacaattgatcaaagtaatcaatattagggcataaactcatgtattagttatttataagtgaaaaaaactattaaatttccacatcaaaaggagcagctattaattaacttggttccatctggtacttgaaggcaacttattatgttcattttaatttttggtataccacatgaaagtaaaaggttgggaaatgttgtattcatgataaagcatcacgggtcagaaatcaaaagttacctttctagcacttataaatgggcgctcatcttgataaatgttctgttgatagacttcatctgcaagcagaactaagttctcatggaagcagaatttgagaagttcctttatgtttccttcactaaggcattggccagtagggtttcctgggttgataatcaccattgctcgaacctatggaagaaaaaataacatcaaagctgaatacagatagtataaatgctacatttttatgcaaacagcatgattgaaaataaaagaaaggggaagaaatataagcatggaaaagaggaaccaaaacaaagtgtactgatggacataaatcatcaagtgggcatctttttgcatgctagataatgactagcaaagtgttcctccaacctaacggctagcgtttctgtccaagagctagcagaggttttaggtgagccagtgaagataacatgaggatatgattatcggaactggttaagaaaaggatagctttccaccagatgcaaaaacaatatgtaccccttactgcttacacaggagtataacattacagaatgagtgtggttcggtggttcctctccaagggacatgtttcaatcatacatgctttagaacttcatataagcctttctatttttgatgaattattgaacaaagccttatagaaatgactcaaagatttgaactgatcaagagaacacgccgatggccggtggtgaggaggttgattccagtgaccattttccacttagagagacttgaactcatcaatattacattgatattgctattttacttggggtattgttttttgtatgcaggaacatggtaatgaactcatttacagtaattgcatgaatgactgaataagataccgtgactcccaaatttctgtaaaacactcacagtgattccctttgaccgcgctgacgccacagtctgtcggagattgacgaagtcaagtccccagttagcctcttcttctaagtagtatggcatgagagaaccaccaaagagggaaatggcagcagaataaagcgggtattgtggaacaggaaccagaatctgcgaaggaaggtacacatctcggttgaatcagatggggtgaaattagtcttcagtagaaatagcactgaattaatcagggcaaatatagcttttaaggaataataacataccccatctctctcatttctgataatggtattcagcatttgcatcacacctttgctggcaccatctgtgaggtaaataagttctggatcactgcaataggtataggatacaggtgtgagaatatggcccaagaaagctatgatgtaaaagaacaccaccagttgagacttgtcatgagtactcttgatcattctgaccttggataaccatcacgcctctcgatgaactcggcgacttccttcctaataccagggatacctcgggaatcactgtaagcacctgattacataaaacctgagtcaacgagctcgcgtgtatgggctacgagagaagaactacatacacaactaaaaaggcttttgcaaggaagctaaagttgacaacttatgggagcatttcgattgaggaaaggatacatgataggtttgccaagaacactagagttgtgtgtgactgtgatacctagtccaccgggtgccatggcgaggtagtgcttggcccgcgcgatggcgtcggcggggaagataaggccgacgttgggatcatcgagcaggaagggggcctggcacagcgccacaacctgcacaacacaacagaatagggagaaatcaatcgatcgaatctactagtagtagaggaagaagaaagaaagaggagtagtgacctggcgggggaaggtgagcggcttctggccgagcgcgtgtgggttgccgacgttggtgaagatgatcttcttgccctccttctggagctcggaggcgcgcaggtacagctccccccgcaccgcgtactgcaccttcttcacgttctcgttcagctcctcgtagtccagcggcttcctcccgccgccgccgccgccgccgaacatcttgccgccgccgccggatcaagaagttgagaggagttggtggctgttgtggtgacagtgtgtgctgatgagagaggaaggggaaccaagaaacaggggagcaggtgagaat
More
|
||||||||||
| CDS seq | atgttcggcggcggcggcggcggcgggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcggtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatcttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccaggttgtggcgctgtgccaggcccccttcctgctcgatgatcccaacgtcggccttatcttccccgccgacgccatcgcgcgggccaagcactacctcgccatggcacccggtggactaggtgcttacagtgattcccgaggtatccctggtattaggaaggaagtcgccgagttcatcgagaggcgtgatggttatccaagtgatccagaacttatttacctcacagatggtgccagcaaaggtgtgatgcaaatgctgaataccattatcagaaatgagagagatgggattctggttcctgttccacaatacccgctttattctgctgccatttccctctttggtggttctctcatgccatactacttagaagaagaggctaactggggacttgacttcgtcaatctccgacagactgtggcgtcagcgcggtcaaagggaatcactgttcgagcaatggtgattatcaacccaggaaaccctactggccaatgccttagtgaaggaaacataaaggaacttctcaaattctgcttccatgagaacttagttctgcttgcagatgaagtctatcaacagaacatttatcaagatgagcgcccatttataagtgctagaaaggttctgtttgacatgggtcctcctatgagcagggaagttcagctggtttctttccatactgtgtcaaaaggatattggggggagtgtggacaacgtggagggtattttgaaatgacaaatcttcctcccaagacagtagacgagatctacaaggttgcatcaatcgcactcagtccaaatgttcctgggcagatctttatgggtttaatggttaaccctcctaagcctggagatatctcttatctgaagttttctgctgaaagcaagtctatcctcgagtctttgaggaggagagcacgcctgatgacagatggtttcaatagttgccgaaatgttgtctgcaatttcacagaaggagctatgtactctttcccccaaatacgcttaccaccaaaagctatagatgcagccaaaagggctggcaaagcggccgatgttttctactgcctcaagcttcttgaagcaactggaatatccactgttccagggtcaggtttcggacaaaaagaaggggtgttccacctgaggacgaccatcctgccagctgaggaggacatgcctgccatcatgaccagcttcaagaagttcaacgacactttcatggatcagtacgatggctactccaggatgtga
More
|
||||||||||
| Protein seq | MFGGGGGGGRKPLDYEELNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLIFPADAIARAKHYLAMAPGGLGAYSDSRGIPGIRKEVAEFIERRDGYPSDPELIYLTDGASKGVMQMLNTIIRNERDGILVPVPQYPLYSAAISLFGGSLMPYYLEEEANWGLDFVNLRQTVASARSKGITVRAMVIINPGNPTGQCLSEGNIKELLKFCFHENLVLLADEVYQQNIYQDERPFISARKVLFDMGPPMSREVQLVSFHTVSKGYWGECGQRGGYFEMTNLPPKTVDEIYKVASIALSPNVPGQIFMGLMVNPPKPGDISYLKFSAESKSILESLRRRARLMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIDAAKRAGKAADVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMTSFKKFNDTFMDQYDGYSRM |
||||||||||
| Function | Glutamate--glyoxylate aminotransferase 2 [UniProtKB/Swiss-Prot:Q9S7E9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0000530 | OsLima_07g0000530.01 | Chr07 | 418491 | 423246 | - | NAM | ||
| CDS seq | atgttcggcggcggcggcggcggcgggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcggtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatcttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccaggttgtggcgctgtgccaggcccccttcctgctcgatgatcccaacgtcggccttatcttccccgccgacgccatcgcgcgggccaagcactacctcgccatggcacccggtggactaggtgcttacagtgattcccgaggtatccctggtattaggaaggaagtcgccgagttcatcgagaggcgtgatggttatccaagtgatccagaacttatttacctcacagatggtgccagcaaaggtgtgatgcaaatgctgaataccattatcagaaatgagagagatgggattctggttcctgttccacaatacccgctttattctgctgccatttccctctttggtggttctctcatgccatactacttagaagaagaggctaactggggacttgacttcgtcaatctccgacagactgtggcgtcagcgcggtcaaagggaatcactgttcgagcaatggtgattatcaacccaggaaaccctactggccaatgccttagtgaaggaaacataaaggaacttctcaaattctgcttccatgagaacttagttctgcttgcagatgaagtctatcaacagaacatttatcaagatgagcgcccatttataagtgctagaaaggttctgtttgacatgggtcctcctatgagcagggaagttcagctggtttctttccatactgtgtcaaaaggatattggggggagtgtggacaacgtggagggtattttgaaatgacaaatcttcctcccaagacagtagacgagatctacaaggttgcatcaatcgcactcagtccaaatgttcctgggcagatctttatgggtttaatggttaaccctcctaagcctggagatatctcttatctgaagttttctgctgaaagcaagtctatcctcgagtctttgaggaggagagcacgcctgatgacagatggtttcaatagttgccgaaatgttgtctgcaatttcacagaaggagctatgtactctttcccccaaatacgcttaccaccaaaagctatagatgcagccaaaagggctggcaaagcggccgatgttttctactgcctcaagcttcttgaagcaactggaatatccactgttccagggtcaggtttcggacaaaaagaaggggtgttccacctgaggacgaccatcctgccagctgaggaggacatgcctgccatcatgaccagcttcaagaagttcaacgacactttcatggatcagtacgatggctactccaggatgtga
More
|
|||||||
| Protein seq | MFGGGGGGGRKPLDYEELNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLIFPADAIARAKHYLAMAPGGLGAYSDSRGIPGIRKEVAEFIERRDGYPSDPELIYLTDGASKGVMQMLNTIIRNERDGILVPVPQYPLYSAAISLFGGSLMPYYLEEEANWGLDFVNLRQTVASARSKGITVRAMVIINPGNPTGQCLSEGNIKELLKFCFHENLVLLADEVYQQNIYQDERPFISARKVLFDMGPPMSREVQLVSFHTVSKGYWGECGQRGGYFEMTNLPPKTVDEIYKVASIALSPNVPGQIFMGLMVNPPKPGDISYLKFSAESKSILESLRRRARLMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIDAAKRAGKAADVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMTSFKKFNDTFMDQYDGYSRM
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0000530 | OsLima_07g0000530.02 | Chr07 | 418229 | 423059 | - | IsoSeq | ||
| CDS seq | agtacgcggtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatcttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccaggttgtggcgctgtgccaggcccccttcctgctcgatgatcccaacgtcggccttatcttccccgccgacgccatcgcgcgggccaagcactacctcgccatggcacccggtg
More
|
|||||||
| Protein seq | STRCGGSCTCAPPSSRRRARRSSSPTSATHTRSARSRSPSPARLWRCARPPSCSMIPTSALSSPPTPSRGPSTTSPWHPV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr07 | 421097 | 421270 | - | OsLima_07g0000530.01 | OsLima_07g0000530.01,OsLima_07g0000530.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 27.653681 | 0.541182 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0108300 | RBH | 138.388031 | 133.532776 | 41.446297 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01760 | RBH | 105.888939 | 101.553009 | 11.339713 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0108300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000520 | RBH | 27.076733 | 40.704609 | 19.429983 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000570 | RBH | 29.584431 | 13.680358 | 21.274609 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000500 | RBH | 89.005028 | 61.516766 | 71.420441 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000500 | RBH | 9.546098 | 1.099605 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000520 | RBH | 456.181305 | 52.726448 | 97.215790 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0007300 | RBH | 455.785355 | 74.346897 | 11.138909 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000510 | RBH | 16.404612 | 3.103591 | 9.483400 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0005500 | RBH | 171.932022 | 20.4371665 | 17.750695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000530 | RBH | 48.603165 | 25.158464 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000540 | RBH | 381.563934 | 44.094482 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0074490 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000530 | RBH | 25.318386 | 19.794514 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000550 | RBH | 22.543686 | 10.172054 | 17.404593 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000550 | RBH | 94.068207 | 68.056656 | 63.925095 |
