Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0000290 | OGI:07000530 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:247316-247837 | ||||||||
| Gene Symbol | prx94 | ||||||||||
| DNA seq | atgctccgccatataaacccggagcagatcgagtgtcggaagatgagtagaataataaatgtcatgttgtaaaagtatatgcccccaccctcgccgccgccatcctcaggctccacttccacgactgcttcgtcagggtattatacatagatgacttatatatatagtagttttcttctgctctactactagctactccgtatatgctgatctgaatgcatggattgggattgcagggttgcgacgcctccgtgctgctgagctccacccacggcgtcggcggcggcaacaacatggccgagcgggacgcaccacccaaccggagcctgcgcgacttcgtctccgtccaaagggtcaagtccaggctcgaggccgcctgcccctccaccgtctcctgcgccgacatcgccgcgtctcctgcgccgctgaggttatgtctccatccaagatcgtttagaaatttaaatattcaattatgcatatatatccgagaccttataatacatttttagacatccaaac
More
|
||||||||||
| CDS seq | atgctccgccatataaacccggagcagatcgagtgtcggaagatgatatatgcccccaccctcgccgccgccatcctcaggctccacttccacgactgcttcgtcaggggttgcgacgcctccgtgctgctgagctccacccacggcgtcggcggcggcaacaacatggccgagcgggacgcaccacccaaccggagcctgcgcgacttcgtctccgtccaaagggtcaagtccaggctcgaggccgcctgcccctccaccgtctcctgcgccgacatcgccgcgtctcctgcgccgctgaggttatgtctccatccaagatcgtttagaaatttaaatattcaattatgcatatatatccgagaccttataatacatttttag |
||||||||||
| Protein seq | MLRHINPEQIECRKMIYAPTLAAAILRLHFHDCFVRGCDASVLLSSTHGVGGGNNMAERDAPPNRSLRDFVSVQRVKSRLEAACPSTVSCADIAASPAPLRLCLHPRSFRNLNIQLCIYIRDLIIHF |
||||||||||
| Function | Peroxidase 1 [UniProtKB/Swiss-Prot:P37834] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0000290 | OsLima_07g0000290.01 | Chr07 | 247316 | 247837 | + | NAM | ||
| CDS seq | atgctccgccatataaacccggagcagatcgagtgtcggaagatgatatatgcccccaccctcgccgccgccatcctcaggctccacttccacgactgcttcgtcaggggttgcgacgcctccgtgctgctgagctccacccacggcgtcggcggcggcaacaacatggccgagcgggacgcaccacccaaccggagcctgcgcgacttcgtctccgtccaaagggtcaagtccaggctcgaggccgcctgcccctccaccgtctcctgcgccgacatcgccgcgtctcctgcgccgctgaggttatgtctccatccaagatcgtttagaaatttaaatattcaattatgcatatatatccgagaccttataatacatttttag
More
|
|||||||
| Protein seq | MLRHINPEQIECRKMIYAPTLAAAILRLHFHDCFVRGCDASVLLSSTHGVGGGNNMAERDAPPNRSLRDFVSVQRVKSRLEAACPSTVSCADIAASPAPLRLCLHPRSFRNLNIQLCIYIRDLIIHF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0104233 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01370 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0104233 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001020 | SBH | 0.0 | 4.417730 | 1.990937 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000980 | SBH | 0.0 | 5.780803 | 1.670117 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0003600 | RBH | 7.294594 | 58.996506 | 0.3096855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000280 | SBH | 0.0 | 0.675968 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0002600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001080 | SBH | 0.0 | 7.757262 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0028560 | SBH | 0.171608 | 2.295808 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001070 | SBH | 0.0 | 28.357082 | 1.625150 |
