Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0000020 | OGI:07000040 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:14273-18205 | ||||||||
| Gene Symbol | SQD2.1, OsSQD2.1 | ||||||||||
| DNA seq | ATGTGAGTTCAATTTGGAGGAGGTGAATGATTCTCCCGGATAGCTCGTCCTAGCCTAGCCTCGCCGCCACCGCTTCCTCCTCCGTGGCACTGGCCGGCGAGCTCCCAAGGAGCCGCCCCCCTCCTTCCCATCGCCTGAAGACGCCACCATCCTCTCCTCAATCCGGCCATCGGCGCCCTTCTCCCACGCCCCCTACTCCGGGCGCCGCCCTCCCCCACCGCCGGCGCCGCTCTCCTAATATGGCGGCATGGAACACCTCCATCCTCTTGCCGCCGCCGCCGCCGTTGTTGTCGCGTGCTGCCGTCGCGACGCCCGCGCTCAATCCGTACCCTCTCCGCCTGCACCGCCGCCACCCCCAAAAGCCCCTCTGCCTTCCATCGGAGTCGTACCCTGCGGATACCGACGCCGACGCCTCGTCGGCCTCCCTCGACTCGAGGCCCCGCCGCATCGCCCTCTTCGTGGAGCCCTCCCCGTTCGCATACGTCTCCGGCTACAAGAACCGCTTCCAGAACTTCATCAAGTATCTTCGGGAGATGGGTGATGAGGTAAGCTTTTCGCCGGCTTTGGATTTTGGAAATTTTTTCCCCTTCTCCATTCCTTCACTATCCTATCCTGGTCGGTTTCGCTTCCACAGGTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCAAAGCTAATCGGATCATGGAGGTAGTATTAATATAATAATATATGGACGCCATTGTTGACAGTCCGCCGACAGCAGCATTTTTGCTGACATGTCTTATTTGATTGATTCCAGCTTCCCCTGCCCGTGGTACCAGAAGGTTCCACTTTCACTAGCCCTAAGTCCTCGGATTATCGGAGAAGTTGCTAGATTTAAGCCTGACATCATTCACGCCTCTTCCCCTGGAATAATGGTAGCACAAAATTTCTACTACATCAACACTTTGAGTTTTAATATGCCACTTACCGCTTTTGTTTCCCCAAAACAGGTATTCGGTGCCCTGATAATTGCAAAGTTGCTCTGCGTCCCTCTAGTAATGTCGTACCACACCCATGTTCCAATGTGAGTTTCCTGAGCTAATACTAGAAGGCAAAGTTTACGACAATCAGTGCAATATCAGCATTGAAGGGTCTCTCCCAAGTCACTGCCATCAGCTGCTTCATGATGGCATACTTGCTGCTTCCTCTCATGTGAAAATTCTGCATAAGGCTTGAAAATTTTAGCCGTGCTCTTTTTTACTCACTACCAAAGCATCAATTTGAAAGGTGAAAAGGAAAGAAAAAAACTTCAGTTCAGTACTTGAATAATTCAGAAATTTATTCTTTATCTTCAGTAACATCAGTGGAAACACGATTCTGGGCTCCTAGGAAAAAAAATCCGTTGATGGCTGGTTTAAGTCCTATGAAATTACGGCTTTATCCACATAGCAAACTGATTCTTCATAACCAATGGCAGTTATATACCGAGATATACATTCAGCTGGCTGGTGAAGCCTATGTGGTTGATTATAAGTAAGCTTCCAGCCATGTCCTATGCGGATACACCTTTACATTAATACTAGCCAACTGATGCATTTCTCACTCCCCAAAGAATTCTTGCACCGAGCTGCGGATCTCACACTGGTACCATCAGTCGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAGGTTGTCATGGCTATACATAGTTTTGTTTTTTTTTTTACCTTTACCATCTTATTCTGACATAGTTTCACCTTCTTTTGCTATTACCAATTTATTATGATGGGTCATATTTCCAGCCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCCCCGTTTCCGTAATGACGAAATGCGTGCAAGGCTAACGTATGTAATCTCCTCTGTGCTCAGTTGCCTTTTTGCAGTACAGATGCAATGGTGCTAAATTGCTACTGGTTGTTGCCTCATTCATTATGTAGAGAATATTTTGAAATGAGCAATTATATTCCCTGTCTAACAGCATGCTTATACTTTCCCTTTTCCTCTATCAGTAACGGTGAACCAGAAAAACCGCTTATACTGTATGTTGGTCGTTTGGGAGTTGAGAAAAGCTTAGACTTTCTTAAGAGGTGAGCTCATGCTGTGAATTTTGTCTGATTTTTTAAAAATGCTGCAGTGCACACTGCGAGGTATTTTTGGAAATATTTACTAACTTCTCATGGCCCAATTGTGTCTGATTTCTACAGTGCATATTGTAGAAACATTCCCTAACTTCTCACGGTTTTTTTTTGCCACAATATTTTGTTGGCATACTTTTGCTTTCTGCTGATATCTGTTGTTGATTCTTCTCCTGAGCTATATCCTGTATTTATTTAGCATCATTCACTGTTCACTTCATTTCTATTTTTCTTAGGGTCATGGACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAGGTGAGTATTGCAGAACCATGTAGTTAGGGGTGTTGTTTCATTGCAACACTCGAGTTAGGCAATATGATCTCTCATGGCTACCATTCGGTTCTTTCCACAGCTGTGGTGTACCACACTTTGTAACACATTGCCATACCTTTTATAGATTCATATTCTTGCCCAATTGTAGCACAGTCTGGTCATCATTTCTCCACCTCAGAAAAGGTGTTCTTGGCACAGTTTAGCCCCTCAAAAAAGGCAACCAAACATGATACTCACTAGAGGAAACATTCTTGTGAGGTTCCAAATGTTGTACTAGTTTTGTATAAAAAAAAACTAGGGGGGCTGGCCATATGCTCTTATCATCCCCAAGTAGGAAAAGTGAATTTAAACTAGCAAATGAAATGCACAAGGTGAACTTGTATTTTCTCATGATTGTTTATTTGTGCACTGGATATGTGAGTTGGTCTTGGCTATTTTCTGTGCAGGGCTCAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACATTACAAGGAGAAGAGCTATCGCAGGCCTATGCCAGTGGGGATGTGTTTGTGATGCCTTCTGAGTCAGAAACGCTTGGTTTTGTTGTGTTGGAGGCTATGTCATCAGGAGTTCCCGTAGTTGCAGCTCGTGCTGGAGGAATACCTGATATTATACCAGAGGATCAGGAGGGTAAGACCAGCTTTCTGTACATACCAGGAGATGTTGATGACTGTGTTAGCAAGATCGAACGTCTCTTGACATGCGAAGAGTTGAGAGAGACAATGCGGAAGGCTGCCAGAAAGGAGATGGAGAAGTTTGATTGGAGAGCAGCTACGAGGAAAATTCGGAACGAGCAGTACAGTGCCGCGATTTGGTTCTGGCGCAAGAAGAGGGCACAGCTATTGAGACCCATCCAGTGGGTGTCCCGGAGGCTGTTCAGGCCTACACCTGCACCTTCCACCATGAATCAATCATAAATTCATCATATTCATGAATCATGATGCTCGATTCTGTCAGTTGGAAGCAGGTCGATCAAATTTTAGTCAGATATATAAACTTGTTAATGTGCCCCTGTGATGTGAGAATATGTAAGCTCAAGCATATCGGATGAAGGAAGGTGAGGCGAAGTTCATTGAACATAATGTGTAAGGCACCGTTCAATATGCTGTCTTTGCTTGCCTTCAACACAAGAGTGTTCCTACAATACTGACGAAATATCAACCTGTGAATTTGTGAATGATAATTATATGAAAAGCAAAGCATAGGTTTTTAGGTGGCGTTTGTGCCTCCAGCCATATAGTGTAAATCGCAGTGGTATTCCACCTTGCTTGCTTCATTGTTGATTGTTGTATTTAGGGATTGTAAACACCCTCTAGTGGATGTTTGAATGGGAGGAACTTTGTAATTGTTAAATTCTACAGGATTTTTTTTCATCACTATAGAATACACAAAAAAATGAAATCCTATTAAATCTTC
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| CDS seq | ATGGCGGCATGGAACACCTCCATCCTCTTGCCGCCGCCGCCGCCGTTGTTGTCGCGTGCTGCCGTCGCGACGCCCGCGCTCAATCCGTACCCTCTCCGCCTGCACCGCCGCCACCCCCAAAAGCCCCTCTGCCTTCCATCGGAGTCGTACCCTGCGGATACCGACGCCGACGCCTCGTCGGCCTCCCTCGACTCGAGGCCCCGCCGCATCGCCCTCTTCGTGGAGCCCTCCCCGTTCGCATACGTCTCCGGCTACAAGAACCGCTTCCAGAACTTCATCAAGTATCTTCGGGAGATGGGTGATGAGGTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCAAAGCTAATCGGATCATGGAGCTTCCCCTGCCCGTGGTACCAGAAGGTTCCACTTTCACTAGCCCTAAGTCCTCGGATTATCGGAGAAGTTGCTAGATTTAAGCCTGACATCATTCACGCCTCTTCCCCTGGAATAATGGTAGCACAAAATTTCTACTACATCAACACTTTGAGTTTTAATATGCCACTTACCGCTTTTGTTTCCCCAAAACAGGTATTCGGTGCCCTGATAATTGCAAAGTTGCTCTGCGTCCCTCTAGTAATGTCGTACCACACCCATGTTCCAATTTATATACCGAGATATACATTCAGCTGGCTGGTGAAGCCTATGTGGTTGATTATAAAATTCTTGCACCGAGCTGCGGATCTCACACTGGTACCATCAGTCGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAGCCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCCCCGTTTCCGTAATGACGAAATGCGTGCAAGGCTAACTAACGGTGAACCAGAAAAACCGCTTATACTGTATGTTGGTCGTTTGGGAGTTGAGAAAAGCTTAGACTTTCTTAAGAGGGTCATGGACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAGGGCTCAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACATTACAAGGAGAAGAGCTATCGCAGGCCTATGCCAGTGGGGATGTGTTTGTGATGCCTTCTGAGTCAGAAACGCTTGGTTTTGTTGTGTTGGAGGCTATGTCATCAGGAGTTCCCGTAGTTGCAGCTCGTGCTGGAGGAATACCTGATATTATACCAGAGGATCAGGAGGGTAAGACCAGCTTTCTGTACATACCAGGAGATGTTGATGACTGTGTTAGCAAGATCGAACGTCTCTTGACATGCGAAGAGTTGAGAGAGACAATGCGGAAGGCTGCCAGAAAGGAGATGGAGAAGTTTGATTGGAGAGCAGCTACGAGGAAAATTCGGAACGAGCAGTACAGTGCCGCGATTTGGTTCTGGCGCAAGAAGAGGGCACAGCTATTGAGACCCATCCAGTGGGTGTCCCGGAGGCTGTTCAGGCCTACACCTGCACCTTCCACCATGAATCAATCATAA
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| Protein seq | MAAWNTSILLPPPPPLLSRAAVATPALNPYPLRLHRRHPQKPLCLPSESYPADTDADASSASLDSRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVIVITTHEGVPQEFYGAKLIGSWSFPCPWYQKVPLSLALSPRIIGEVARFKPDIIHASSPGIMVAQNFYYINTLSFNMPLTAFVSPKQVFGALIIAKLLCVPLVMSYHTHVPIYIPRYTFSWLVKPMWLIIKFLHRAADLTLVPSVAIGKDLQAARVTAANKIRLWNKGVDSESFHPRFRNDEMRARLTNGEPEKPLILYVGRLGVEKSLDFLKRVMDRLPGSRIAFVGDGPFRAQLQLMFTGMPAVFTGTLQGEELSQAYASGDVFVMPSESETLGFVVLEAMSSGVPVVAARAGGIPDIIPEDQEGKTSFLYIPGDVDDCVSKIERLLTCEELRETMRKAARKEMEKFDWRAATRKIRNEQYSAAIWFWRKKRAQLLRPIQWVSRRLFRPTPAPSTMNQS |
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| Function | Sulfoquinovosyl transferase SQD2 [UniProtKB/Swiss-Prot:Q8S4F6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0000020 | OsLima_07g0000020.02 | Chr07 | 14301 | 18205 | + | NAM | ||
| CDS seq | ATGGCGGCATGGAACACCTCCATCCTCTTGCCGCCGCCGCCGCCGTTGTTGTCGCGTGCTGCCGTCGCGACGCCCGCGCTCAATCCGTACCCTCTCCGCCTGCACCGCCGCCACCCCCAAAAGCCCCTCTGCCTTCCATCGGAGTCGTACCCTGCGGATACCGACGCCGACGCCTCGTCGGCCTCCCTCGACTCGAGGCCCCGCCGCATCGCCCTCTTCGTGGAGCCCTCCCCGTTCGCATACGTCTCCGGCTACAAGAACCGCTTCCAGAACTTCATCAAGTATCTTCGGGAGATGGGTGATGAGGTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCAAAGCTAATCGGATCATGGAGCTTCCCCTGCCCGTGGTACCAGAAGGTTCCACTTTCACTAGCCCTAAGTCCTCGGATTATCGGAGAAGTTGCTAGATTTAAGCCTGACATCATTCACGCCTCTTCCCCTGGAATAATGGTAGCACAAAATTTCTACTACATCAACACTTTGAGTTTTAATATGCCACTTACCGCTTTTGTTTCCCCAAAACAGGTATTCGGTGCCCTGATAATTGCAAAGTTGCTCTGCGTCCCTCTAGTAATGTCGTACCACACCCATGTTCCAATTTATATACCGAGATATACATTCAGCTGGCTGGTGAAGCCTATGTGGTTGATTATAAAATTCTTGCACCGAGCTGCGGATCTCACACTGGTACCATCAGTCGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAGCCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCCCCGTTTCCGTAATGACGAAATGCGTGCAAGGCTAACTAACGGTGAACCAGAAAAACCGCTTATACTGTATGTTGGTCGTTTGGGAGTTGAGAAAAGCTTAGACTTTCTTAAGAGGGTCATGGACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAGGGCTCAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACATTACAAGGAGAAGAGCTATCGCAGGCCTATGCCAGTGGGGATGTGTTTGTGATGCCTTCTGAGTCAGAAACGCTTGGTTTTGTTGTGTTGGAGGCTATGTCATCAGGAGTTCCCGTAGTTGCAGCTCGTGCTGGAGGAATACCTGATATTATACCAGAGGATCAGGAGGGTAAGACCAGCTTTCTGTACATACCAGGAGATGTTGATGACTGTGTTAGCAAGATCGAACGTCTCTTGACATGCGAAGAGTTGAGAGAGACAATGCGGAAGGCTGCCAGAAAGGAGATGGAGAAGTTTGATTGGAGAGCAGCTACGAGGAAAATTCGGAACGAGCAGTACAGTGCCGCGATTTGGTTCTGGCGCAAGAAGAGGGCACAGCTATTGAGACCCATCCAGTGGGTGTCCCGGAGGCTGTTCAGGCCTACACCTGCACCTTCCACCATGAATCAATCATAA
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| Protein seq | MAAWNTSILLPPPPPLLSRAAVATPALNPYPLRLHRRHPQKPLCLPSESYPADTDADASSASLDSRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVIVITTHEGVPQEFYGAKLIGSWSFPCPWYQKVPLSLALSPRIIGEVARFKPDIIHASSPGIMVAQNFYYINTLSFNMPLTAFVSPKQVFGALIIAKLLCVPLVMSYHTHVPIYIPRYTFSWLVKPMWLIIKFLHRAADLTLVPSVAIGKDLQAARVTAANKIRLWNKGVDSESFHPRFRNDEMRARLTNGEPEKPLILYVGRLGVEKSLDFLKRVMDRLPGSRIAFVGDGPFRAQLQLMFTGMPAVFTGTLQGEELSQAYASGDVFVMPSESETLGFVVLEAMSSGVPVVAARAGGIPDIIPEDQEGKTSFLYIPGDVDDCVSKIERLLTCEELRETMRKAARKEMEKFDWRAATRKIRNEQYSAAIWFWRKKRAQLLRPIQWVSRRLFRPTPAPSTMNQS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0000020 | OsLima_07g0000020.03 | Chr07 | 14315 | 18205 | + | NAM | ||
| CDS seq | ATGGCGGCATGGAACACCTCCATCCTCTTGCCGCCGCCGCCGCCGTTGTTGTCGCGTGCTGCCGTCGCGACGCCCGCGCTCAATCCGTACCCTCTCCGCCTGCACCGCCGCCACCCCCAAAAGCCCCTCTGCCTTCCATCGGAGTCGTACCCTGCGGATACCGACGCCGACGCCTCGTCGGCCTCCCTCGACTCGAGGCCCCGCCGCATCGCCCTCTTCGTGGAGCCCTCCCCGTTCGCATACGTCTCCGGCTACAAGAACCGCTTCCAGAACTTCATCAAGTATCTTCGGGAGATGGGTGATGAGGTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCAAAGCTAATCGGATCATGGAGCTTCCCCTGCCCGTGGTACCAGAAGGTATTCGGTGCCCTGATAATTGCAAAGTTGCTCTGCGTCCCTCTAGTAATGTCGTACCACACCCATGTTCCAATTAACGGTGAACCAGAAAAACCGCTTATACTGTATGTTGGTCGTTTGGGAGTTGAGAAAAGCTTAGACTTTCTTAAGAGGGTCATGGACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAGGGCTCAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACATTACAAGGAGAAGAGCTATCGCAGGCCTATGCCAGTGGGGATGTGTTTGTGATGCCTTCTGAGTCAGAAACGCTTGGTTTTGTTGTGTTGGAGGCTATGTCATCAGGAGTTCCCGTAGTTGCAGCTCGTGCTGGAGGAATACCTGATATTATACCAGAGGATCAGGAGGGTAAGACCAGCTTTCTGTACATACCAGGAGATGTTGATGACTGTGTTAGCAAGATCGAACGTCTCTTGACATGCGAAGAGTTGAGAGAGACAATGCGGAAGGCTGCCAGAAAGGAGATGGAGAAGTTTGATTGGAGAGCAGCTACGAGGAAAATTCGGAACGAGCAGTACAGTGCCGCGATTTGGTTCTGGCGCAAGAAGAGGGCACAGCTATTGAGACCCATCCAGTGGGTGTCCCGGAGGCTGTTCAGGCCTACACCTGCACCTTCCACCATGAATCAATCATAA
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| Protein seq | MAAWNTSILLPPPPPLLSRAAVATPALNPYPLRLHRRHPQKPLCLPSESYPADTDADASSASLDSRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVIVITTHEGVPQEFYGAKLIGSWSFPCPWYQKVFGALIIAKLLCVPLVMSYHTHVPINGEPEKPLILYVGRLGVEKSLDFLKRVMDRLPGSRIAFVGDGPFRAQLQLMFTGMPAVFTGTLQGEELSQAYASGDVFVMPSESETLGFVVLEAMSSGVPVVAARAGGIPDIIPEDQEGKTSFLYIPGDVDDCVSKIERLLTCEELRETMRKAARKEMEKFDWRAATRKIRNEQYSAAIWFWRKKRAQLLRPIQWVSRRLFRPTPAPSTMNQS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0000020 | OsLima_07g0000020.01 | Chr07 | 14273 | 18205 | + | NAM | ||
| CDS seq | ATGGCGGCATGGAACACCTCCATCCTCTTGCCGCCGCCGCCGCCGTTGTTGTCGCGTGCTGCCGTCGCGACGCCCGCGCTCAATCCGTACCCTCTCCGCCTGCACCGCCGCCACCCCCAAAAGCCCCTCTGCCTTCCATCGGAGTCGTACCCTGCGGATACCGACGCCGACGCCTCGTCGGCCTCCCTCGACTCGAGGCCCCGCCGCATCGCCCTCTTCGTGGAGCCCTCCCCGTTCGCATACGTCTCCGGCTACAAGAACCGCTTCCAGAACTTCATCAAGTATCTTCGGGAGATGGGTGATGAGGTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCAAAGCTAATCGGATCATGGAGCTTCCCCTGCCCGTGGTACCAGAAGGTTCCACTTTCACTAGCCCTAAGTCCTCGGATTATCGGAGAAGTTGCTAGATTTAAGCCTGACATCATTCACGCCTCTTCCCCTGGAATAATGGTATTCGGTGCCCTGATAATTGCAAAGTTGCTCTGCGTCCCTCTAGTAATGTCGTACCACACCCATGTTCCAATTTATATACCGAGATATACATTCAGCTGGCTGGTGAAGCCTATGTGGTTGATTATAAAATTCTTGCACCGAGCTGCGGATCTCACACTGGTACCATCAGTCGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAGCCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCCCCGTTTCCGTAATGACGAAATGCGTGCAAGGCTAACTAACGGTGAACCAGAAAAACCGCTTATACTGTATGTTGGTCGTTTGGGAGTTGAGAAAAGCTTAGACTTTCTTAAGAGGGTCATGGACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAGGGCTCAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACATTACAAGGAGAAGAGCTATCGCAGGCCTATGCCAGTGGGGATGTGTTTGTGATGCCTTCTGAGTCAGAAACGCTTGGTTTTGTTGTGTTGGAGGCTATGTCATCAGGAGTTCCCGTAGTTGCAGCTCGTGCTGGAGGAATACCTGATATTATACCAGAGGATCAGGAGGGTAAGACCAGCTTTCTGTACATACCAGGAGATGTTGATGACTGTGTTAGCAAGATCGAACGTCTCTTGACATGCGAAGAGTTGAGAGAGACAATGCGGAAGGCTGCCAGAAAGGAGATGGAGAAGTTTGATTGGAGAGCAGCTACGAGGAAAATTCGGAACGAGCAGTACAGTGCCGCGATTTGGTTCTGGCGCAAGAAGAGGGCACAGCTATTGAGACCCATCCAGTGGGTGTCCCGGAGGCTGTTCAGGCCTACACCTGCACCTTCCACCATGAATCAATCATAA
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| Protein seq | MAAWNTSILLPPPPPLLSRAAVATPALNPYPLRLHRRHPQKPLCLPSESYPADTDADASSASLDSRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVIVITTHEGVPQEFYGAKLIGSWSFPCPWYQKVPLSLALSPRIIGEVARFKPDIIHASSPGIMVFGALIIAKLLCVPLVMSYHTHVPIYIPRYTFSWLVKPMWLIIKFLHRAADLTLVPSVAIGKDLQAARVTAANKIRLWNKGVDSESFHPRFRNDEMRARLTNGEPEKPLILYVGRLGVEKSLDFLKRVMDRLPGSRIAFVGDGPFRAQLQLMFTGMPAVFTGTLQGEELSQAYASGDVFVMPSESETLGFVVLEAMSSGVPVVAARAGGIPDIIPEDQEGKTSFLYIPGDVDDCVSKIERLLTCEELRETMRKAARKEMEKFDWRAATRKIRNEQYSAAIWFWRKKRAQLLRPIQWVSRRLFRPTPAPSTMNQS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0000020 | OsLima_07g0000020.05 | Chr07 | 15318 | 18205 | + | NAM | ||
| CDS seq | ATGTGGTTGATTATAAAATTCTTGCACCGAGCTGCGGATCTCACACTGGTACCATCAGTCGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAGCCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCCCCGTTTCCGTAATGACGAAATGCGTGCAAGGCTAACTAACGGTGAACCAGAAAAACCGCTTATACTGTATGTTGGTCGTTTGGGAGTTGAGAAAAGCTTAGACTTTCTTAAGAGGGTCATGGACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAGGGCTCAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACATTACAAGGAGAAGAGCTATCGCAGGCCTATGCCAGTGGGGATGTGTTTGTGATGCCTTCTGAGTCAGAAACGCTTGGTTTTGTTGTGTTGGAGGCTATGTCATCAGGAGTTCCCGTAGTTGCAGCTCGTGCTGGAGGAATACCTGATATTATACCAGAGGATCAGGAGGGTAAGACCAGCTTTCTGTACATACCAGGAGATGTTGATGACTGTGTTAGCAAGATCGAACGTCTCTTGACATGCGAAGAGTTGAGAGAGACAATGCGGAAGGCTGCCAGAAAGGAGATGGAGAAGTTTGATTGGAGAGCAGCTACGAGGAAAATTCGGAACGAGCAGTACAGTGCCGCGATTTGGTTCTGGCGCAAGAAGAGGGCACAGCTATTGAGACCCATCCAGTGGGTGTCCCGGAGGCTGTTCAGGCCTACACCTGCACCTTCCACCATGAATCAATCATAA
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| Protein seq | MWLIIKFLHRAADLTLVPSVAIGKDLQAARVTAANKIRLWNKGVDSESFHPRFRNDEMRARLTNGEPEKPLILYVGRLGVEKSLDFLKRVMDRLPGSRIAFVGDGPFRAQLQLMFTGMPAVFTGTLQGEELSQAYASGDVFVMPSESETLGFVVLEAMSSGVPVVAARAGGIPDIIPEDQEGKTSFLYIPGDVDDCVSKIERLLTCEELRETMRKAARKEMEKFDWRAATRKIRNEQYSAAIWFWRKKRAQLLRPIQWVSRRLFRPTPAPSTMNQS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0000020 | OsLima_07g0000020.04 | Chr07 | 14315 | 15541 | + | NAM | ||
| CDS seq | ATGGCGGCATGGAACACCTCCATCCTCTTGCCGCCGCCGCCGCCGTTGTTGTCGCGTGCTGCCGTCGCGACGCCCGCGCTCAATCCGTACCCTCTCCGCCTGCACCGCCGCCACCCCCAAAAGCCCCTCTGCCTTCCATCGGAGTCGTACCCTGCGGATACCGACGCCGACGCCTCGTCGGCCTCCCTCGACTCGAGGCCCCGCCGCATCGCCCTCTTCGTGGAGCCCTCCCCGTTCGCATACGTCTCCGGCTACAAGAACCGCTTCCAGAACTTCATCAAGTATCTTCGGGAGATGGGTGATGAGGTCATTGTGATTACCACGCATGAGGGCGTACCTCAAGAATTCTACGGAGCAAAGCTAATCGGATCATGGAGCTTCCCCTGCCCGTGGTACCAGAAGGTTCCACTTTCACTAGCCCTAAGTCCTCGGATTATCGGAGAAGTTGCTAGATTTAAGCCTGACATCATTCACGCCTCTTCCCCTGGAATAATGGTAGCACAAAATTTCTACTACATCAACACTTTGAGTTTTAATATGCCACTTACCGCTTTTGTTTCCCCAAAACAGGTATTCGGTGCCCTGATAATTGCAAAGTTGCTCTGCGTCCCTCTAGTAATGTCGTACCACACCCATGTTCCAATGTGA
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| Protein seq | MAAWNTSILLPPPPPLLSRAAVATPALNPYPLRLHRRHPQKPLCLPSESYPADTDADASSASLDSRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVIVITTHEGVPQEFYGAKLIGSWSFPCPWYQKVPLSLALSPRIIGEVARFKPDIIHASSPGIMVAQNFYYINTLSFNMPLTAFVSPKQVFGALIIAKLLCVPLVMSYHTHVPM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr07 | 15069 | 15335 | + | OsLima_07g0000020.02 | OsLima_07g0000020.01,OsLima_07g0000020.02 | All |
| RI | Chr07 | 15069 | 15335 | + | OsLima_07g0000020.02 | OsLima_07g0000020.02,OsLima_07g0000020.03 | All |
| A5 | Chr07 | 15093 | 15262 | + | OsLima_07g0000020.01 | OsLima_07g0000020.01,OsLima_07g0000020.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.578119 | 0.126722 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0100300 | RBH | 6.775341 | 5.809784 | 4.297337 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01030 | RBH | 4.161133 | 3.614832 | 0.992121 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0100300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000030 | RBH | 3.632264 | 1.597342 | 10.895586 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000030 | RBH | 1.642218 | 0.000000 | 6.043336 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000030 | RBH | 15.342719 | 0.000000 | 9.705758 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000030 | RBH | 1.635982 | 0.107198 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000030 | RBH | 33.525520 | 0.000000 | 40.664341 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0000400 | RBH | 23.125765 | 5.8661435 | 4.3366215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000020 | RBH | 3.064624 | 0.0 | 2.409035 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0000200 | RBH | 24.090855 | 2.8930785 | 5.3457285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002730 | RBH | 0.131620 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000020 | RBH | 4.478160 | 2.715544 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000020 | RBH | 33.094986 | 16.742060 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0000020 | RBH | 6.030326 | 0.107293 | 3.626149 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000020 | RBH | 3.716309 | 0.501143 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000020 | RBH | 2.448337 | 0.599616 | 5.029181 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000020 | RBH | 14.019338 | 13.074912 | 17.059067 |
