Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0027780 | OGI:06082320 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:30772377-30775473 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatccaacatgtttagttacaccactgccatacctcttcgtaaggtgtggcagacgaatgaagttgttgactgcaatatcaacggatcaagtatttacaatggagtataaatgaaaagagaccgaaggtagatttttttttcttatctagttcattttagaaagtctttttgagatacttctttttgttgactttctgttttagtttgatcttccccaatatatattgttttctggaaacttctgatgaaaaccacatgttttgaatataatgtgaagagaaccacaacaattatttattgaagtaattggcagtttggtacactttacctgcttgaaaatcagaggattcaaaaatatggatgtttggtacatgctgaacaatgtacctgtcgcttccttggatcttcactatgaactcctttggcatatctgttataatcatctcatggagtgtcctaatgtaccttatgcctttcggtacttcatttagattccttaaaccaacaagatctaactcacgtaggcacatcattgatccatcctcaatctcaatccggttgagatgttccatgtcagccaattgcaataagttgagcttagggaaccactttgcatgaaaatttaaccgttccccatcatatgctccggtgagcaccagaacaactagatttagcatgtaagagaaggattcaatatgatccttcttcagaccagaccagtccagttttaactctgttattttctctaacttggcaaacattggtgggagcacacccccctctaattttcctgccagccagaataccttaagatttgatagggccttgcatttttaagttaagagtctcatccatatcacaagaggaaataaacaacctgctgaggttaggcatctttgtcaaagagttgcataactctgcgatgtagctttgttgcactttcattacacacaaacttctcatccgcgtcaagttccccagctgtgaaaccaaatccttatttgctgaaacggtctgtaaagcttgcaagttctttagatggcaaatattgccaggaatttttgtggcacttatgcaatccaatgatctttcttgaagatcatggattacataggcatataagtgccgcaaattagttaacaaagttatttccaacggcaactcttccacatagctggacctgatatctaaaaactgtaggttgataaggtttttgaatgatgctggtatatgtttcacttttgtgtgcgataaatctagataatgtaagttatatagttctgtgaccacacctggaacttgttcgatattggcaaatctcaggcacagaactcttagcagtctgaaacgtgataaagcatcataaatccaagaagatggttctccgatatcaagcagaacgaaagatcggagtttagaacctcctaaatacctgagggactgagcgtccttttggatccataaacggcggtattcatgggcaacttgggttataccaacattgtcatatgaaaaagcaagcctctccttcttagcaatgattgaggccatctctctcacaaggtcatgcatacgaaatgttctagcccttccacatgcattcctttctatgacagcaagaagagaacgctgagtgagctctgtaaggtaacaccgagcaacttcctccattgttgttccatctcctctttcttctacaagaccttccgcaatccataactcaacaagcatttttcttttaatcctgcagtcttcaggaaagaggctgcaatatagaaaacaacttctcagataacttgggagatcatttaagctcaggtttagaatattggcaatccaattgagctctggattgttagctaattgccagccaagttggttgtagaacagtttccactcctgctcctcgaattcacggtatgatagaaggcttccgatggctacgatagccagtggcaatccttgacacttggtcacaattttctctgcccaaggtctaagattttctgggcacattttatcttccaatctacggaacgccttcttacagaatagatgccatgcttcagtatggggaagagcttcaagctcaactacacaattgtgatctgctaagaaagcaacatcctttttgcgagtggtgatcagtaccctgcctccaagattgtttctgacaaatgcataattcaagaataaccaaacatctttatcccatacatcatccaagacaattagatatttcctgcgctttaggtagatctgaagttcctcaattaattttattcgattcatagcctccacattactagccaagtacacctgttggtccatcaattgcttgctgatttgccttagcaagtcttcaatttcataactctgggatagagtaatccaagcattgcaagcaaaggccatcataaattgttggtttttaaatatactgcttgctatagttgttttgcctaccccacccatgccgaaggtggacatgacagatcgatcttgtctctcctctagtacccactgtgtcaatcttctagttacactagcatttcccacaatttcagtgtcgtcagttagataagcagaatctgatactgaaagctgcctaggatactgactcatgttgctgctgctcttttcgtctatggaaatgccataccgattcctcatcgctgatagcctctgaatccgagtttctacttgacttatctgtctggagatgttctgccaggctgcaacattcttggtctgctggaacttcctcttgaagaaggtacctgtatcaatggcctgtgcagcgaggtaagcatactcatcgacgatgtcttcgacatcatgggcaacatctctaacctgatccaaccaggcatcaaacgttttgtcaccaactttctctgcactaacctgactgataaatgctctcatgatagtaaattcactctcgatttgcttcatgctgtgctcaaaatatgtcaaaactgatgctgcctccaccacctctgtgcccaatttcaccaaggcaccttctcccagggagaaagcgacctttctgagaacaagaaatagggtatctgccatacttgctccactgc
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| CDS seq | atggcagataccctatttcttgttctcagaaaggtcgctttctccctgggagaaggtgccttggtgaaattgggcacagaggtggtggaggcagcatcagttttgacatattttgagcacagcatgaagcaaatcgagagtgaatttactatcatgagagcatttatcagtcaggttagagatgttgcccatgatgtcgaagacatcgtcgatgagtatgcttacctcgctgcacaggccattgatacaggtaccttcttcaagaggaagttccagcagaccaagaatgttgcagcctggcagaacatctccagacagataagtcaagtagaaactcggattcagaggctatcagcgatgaggaatcggtatggcatttccatagacgaaaagagcagcagcaacatgagtcagtatcctaggcagctttcagtatcagattctgcttatctaactgacgacactgaaattgtgggaaatgctagtgtaactagaagattgacacagtgggtactagaggagagacaagatcgatctgtcatgtccaccttcggcatgggtggggtaggcaaaacaactatagcaagcagtatatttaaaaaccaacaatttatgatggcctttgcttgcaatgcttggattactctatcccagagttatgaaattgaagacttgctaaggcaaatcagcaagcaattgatggaccaacaggtgtacttggctagtaatgtggaggctatgaatcgaataaaattaattgaggaacttcagatctacctaaagcgcaggaaatatctaattgtcttggatgatgtatgggataaagatgtttggttattcttgaattatgcatttgtcagaaacaatcttggaggcagggtactgatcaccactcgcaaaaaggatgttgctttcttagcagatcacaattgtgtagttgagcttgaagctcttccccatactgaagcatggcatctattctgtaagaaggcgttccgtagattggaagataaaatgtgcccagaaaatcttagaccttgggcagagaaaattgtgaccaagtgtcaaggattgccactggctatcgtagccatcggaagccttctatcataccgtgaattcgaggagcaggagtggaaactgttctacaaccaacttggctggcaattagctaacaatccagagctcaattggattgccaatattctaaacctgagcttaaatgatctcccaagttatctgagaagttgttttctatattgcagcctctttcctgaagactgcaggattaaaagaaaaatgcttgttgagttatggattgcggaaggtcttgtagaagaaagaggagatggaacaacaatggaggaagttgctcggtgttaccttacagagctcactcagcgttctcttcttgctgtcatagaaaggaatgcatgtggaagggctagaacatttcgtatgcatgaccttgtgagagagatggcctcaatcattgctaagaaggagaggcttgctttttcatatgacaatgttggtataacccaagttgcccatgaataccgccgtttatggatccaaaaggacgctcagtccctcaggtatttaggaggttctaaactccgatctttcgttctgcttgatatcggagaaccatcttcttggatttatgatgctttatcacgtttcagactgctaagagttctgtgcctgagatttgccaatatcgaacaagttccaggtgtggtcacagaactatataacttacattatctagatttatcgcacacaaaagtgaaacatataccagcatcattcaaaaaccttatcaacctacagtttttagatatcaggtccagctatgtggaagagttgccgttggaaataactttgttaactaatttgcggcacttatatgcctatgtaatccatgatcttcaagaaagatcattggattgcataagtgccacaaaaattcctggcaatatttgccatctaaagaacttgcaagctttacagaccgtttcagcaaataaggatttggtttcacagctggggaacttgacgcggatgagaagtttgtgtgtaatgaaagccctatcaaatcttaaggtattctggctggcaggaaaattagaggggggtgtgctcccaccaatgtttgccaagttagagaaaataacagagttaaaactggactggtctggtctgaagaaggatcatattgaatccttctcttacatgctaaatctagttgttctggtgctcaccggagcatatgatggggaacggttaaattttcatgcaaagtggttccctaagctcaacttattgcaattggctgacatggaacatctcaaccggattgagattgaggatggatcaatgatgtgcctacgtgagttagatcttgttggtttaaggaatctaaatgaagtaccgaaaggcataaggtacattaggacactccatgagatgattataacagatatgccaaaggagttcatagtgaagatccaaggaagcgacaggtacattgttcagcatgtaccaaacatccatatttttgaatcctctgattttcaagcagtcaacaacttcattcgtctgccacaccttacgaagaggtatggcagtggtgtaactaaacatgttggatga
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| Protein seq | MADTLFLVLRKVAFSLGEGALVKLGTEVVEAASVLTYFEHSMKQIESEFTIMRAFISQVRDVAHDVEDIVDEYAYLAAQAIDTGTFFKRKFQQTKNVAAWQNISRQISQVETRIQRLSAMRNRYGISIDEKSSSNMSQYPRQLSVSDSAYLTDDTEIVGNASVTRRLTQWVLEERQDRSVMSTFGMGGVGKTTIASSIFKNQQFMMAFACNAWITLSQSYEIEDLLRQISKQLMDQQVYLASNVEAMNRIKLIEELQIYLKRRKYLIVLDDVWDKDVWLFLNYAFVRNNLGGRVLITTRKKDVAFLADHNCVVELEALPHTEAWHLFCKKAFRRLEDKMCPENLRPWAEKIVTKCQGLPLAIVAIGSLLSYREFEEQEWKLFYNQLGWQLANNPELNWIANILNLSLNDLPSYLRSCFLYCSLFPEDCRIKRKMLVELWIAEGLVEERGDGTTMEEVARCYLTELTQRSLLAVIERNACGRARTFRMHDLVREMASIIAKKERLAFSYDNVGITQVAHEYRRLWIQKDAQSLRYLGGSKLRSFVLLDIGEPSSWIYDALSRFRLLRVLCLRFANIEQVPGVVTELYNLHYLDLSHTKVKHIPASFKNLINLQFLDIRSSYVEELPLEITLLTNLRHLYAYVIHDLQERSLDCISATKIPGNICHLKNLQALQTVSANKDLVSQLGNLTRMRSLCVMKALSNLKVFWLAGKLEGGVLPPMFAKLEKITELKLDWSGLKKDHIESFSYMLNLVVLVLTGAYDGERLNFHAKWFPKLNLLQLADMEHLNRIEIEDGSMMCLRELDLVGLRNLNEVPKGIRYIRTLHEMIITDMPKEFIVKIQGSDRYIVQHVPNIHIFESSDFQAVNNFIRLPHLTKRYGSGVTKHVG |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0027780 | OsLima_06g0027780.01 | Chr06 | 30772377 | 30775473 | - | NAM | ||
| CDS seq | atggcagataccctatttcttgttctcagaaaggtcgctttctccctgggagaaggtgccttggtgaaattgggcacagaggtggtggaggcagcatcagttttgacatattttgagcacagcatgaagcaaatcgagagtgaatttactatcatgagagcatttatcagtcaggttagagatgttgcccatgatgtcgaagacatcgtcgatgagtatgcttacctcgctgcacaggccattgatacaggtaccttcttcaagaggaagttccagcagaccaagaatgttgcagcctggcagaacatctccagacagataagtcaagtagaaactcggattcagaggctatcagcgatgaggaatcggtatggcatttccatagacgaaaagagcagcagcaacatgagtcagtatcctaggcagctttcagtatcagattctgcttatctaactgacgacactgaaattgtgggaaatgctagtgtaactagaagattgacacagtgggtactagaggagagacaagatcgatctgtcatgtccaccttcggcatgggtggggtaggcaaaacaactatagcaagcagtatatttaaaaaccaacaatttatgatggcctttgcttgcaatgcttggattactctatcccagagttatgaaattgaagacttgctaaggcaaatcagcaagcaattgatggaccaacaggtgtacttggctagtaatgtggaggctatgaatcgaataaaattaattgaggaacttcagatctacctaaagcgcaggaaatatctaattgtcttggatgatgtatgggataaagatgtttggttattcttgaattatgcatttgtcagaaacaatcttggaggcagggtactgatcaccactcgcaaaaaggatgttgctttcttagcagatcacaattgtgtagttgagcttgaagctcttccccatactgaagcatggcatctattctgtaagaaggcgttccgtagattggaagataaaatgtgcccagaaaatcttagaccttgggcagagaaaattgtgaccaagtgtcaaggattgccactggctatcgtagccatcggaagccttctatcataccgtgaattcgaggagcaggagtggaaactgttctacaaccaacttggctggcaattagctaacaatccagagctcaattggattgccaatattctaaacctgagcttaaatgatctcccaagttatctgagaagttgttttctatattgcagcctctttcctgaagactgcaggattaaaagaaaaatgcttgttgagttatggattgcggaaggtcttgtagaagaaagaggagatggaacaacaatggaggaagttgctcggtgttaccttacagagctcactcagcgttctcttcttgctgtcatagaaaggaatgcatgtggaagggctagaacatttcgtatgcatgaccttgtgagagagatggcctcaatcattgctaagaaggagaggcttgctttttcatatgacaatgttggtataacccaagttgcccatgaataccgccgtttatggatccaaaaggacgctcagtccctcaggtatttaggaggttctaaactccgatctttcgttctgcttgatatcggagaaccatcttcttggatttatgatgctttatcacgtttcagactgctaagagttctgtgcctgagatttgccaatatcgaacaagttccaggtgtggtcacagaactatataacttacattatctagatttatcgcacacaaaagtgaaacatataccagcatcattcaaaaaccttatcaacctacagtttttagatatcaggtccagctatgtggaagagttgccgttggaaataactttgttaactaatttgcggcacttatatgcctatgtaatccatgatcttcaagaaagatcattggattgcataagtgccacaaaaattcctggcaatatttgccatctaaagaacttgcaagctttacagaccgtttcagcaaataaggatttggtttcacagctggggaacttgacgcggatgagaagtttgtgtgtaatgaaagccctatcaaatcttaaggtattctggctggcaggaaaattagaggggggtgtgctcccaccaatgtttgccaagttagagaaaataacagagttaaaactggactggtctggtctgaagaaggatcatattgaatccttctcttacatgctaaatctagttgttctggtgctcaccggagcatatgatggggaacggttaaattttcatgcaaagtggttccctaagctcaacttattgcaattggctgacatggaacatctcaaccggattgagattgaggatggatcaatgatgtgcctacgtgagttagatcttgttggtttaaggaatctaaatgaagtaccgaaaggcataaggtacattaggacactccatgagatgattataacagatatgccaaaggagttcatagtgaagatccaaggaagcgacaggtacattgttcagcatgtaccaaacatccatatttttgaatcctctgattttcaagcagtcaacaacttcattcgtctgccacaccttacgaagaggtatggcagtggtgtaactaaacatgttggatga
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| Protein seq | MADTLFLVLRKVAFSLGEGALVKLGTEVVEAASVLTYFEHSMKQIESEFTIMRAFISQVRDVAHDVEDIVDEYAYLAAQAIDTGTFFKRKFQQTKNVAAWQNISRQISQVETRIQRLSAMRNRYGISIDEKSSSNMSQYPRQLSVSDSAYLTDDTEIVGNASVTRRLTQWVLEERQDRSVMSTFGMGGVGKTTIASSIFKNQQFMMAFACNAWITLSQSYEIEDLLRQISKQLMDQQVYLASNVEAMNRIKLIEELQIYLKRRKYLIVLDDVWDKDVWLFLNYAFVRNNLGGRVLITTRKKDVAFLADHNCVVELEALPHTEAWHLFCKKAFRRLEDKMCPENLRPWAEKIVTKCQGLPLAIVAIGSLLSYREFEEQEWKLFYNQLGWQLANNPELNWIANILNLSLNDLPSYLRSCFLYCSLFPEDCRIKRKMLVELWIAEGLVEERGDGTTMEEVARCYLTELTQRSLLAVIERNACGRARTFRMHDLVREMASIIAKKERLAFSYDNVGITQVAHEYRRLWIQKDAQSLRYLGGSKLRSFVLLDIGEPSSWIYDALSRFRLLRVLCLRFANIEQVPGVVTELYNLHYLDLSHTKVKHIPASFKNLINLQFLDIRSSYVEELPLEITLLTNLRHLYAYVIHDLQERSLDCISATKIPGNICHLKNLQALQTVSANKDLVSQLGNLTRMRSLCVMKALSNLKVFWLAGKLEGGVLPPMFAKLEKITELKLDWSGLKKDHIESFSYMLNLVVLVLTGAYDGERLNFHAKWFPKLNLLQLADMEHLNRIEIEDGSMMCLRELDLVGLRNLNEVPKGIRYIRTLHEMIITDMPKEFIVKIQGSDRYIVQHVPNIHIFESSDFQAVNNFIRLPHLTKRYGSGVTKHVG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.062009 | 0.128190 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0698812 | RBH | 0.275869 | 0.423428 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g48520 | RBH | 0.336091 | 0.251305 | 0.137455 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0698812 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027860 | RBH | 0.024029 | 5.198305 | 1.539515 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027680 | RBH | 0.216735 | 0.000000 | 0.445432 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027810 | RBH | 0.743252 | 1.676393 | 0.571482 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027400 | RBH | 0.099196 | 0.064882 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027880 | RBH | 1.461549 | 3.603832 | 3.222508 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0461500 | SBH | 3.5206125 | 7.8294665 | 11.103255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027270 | RBH | 0.099973 | 0.167955 | 0.144220 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0445100 | SBH | 4.3876695 | 21.6064635 | 7.5086175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0003970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027850 | RBH | 0.000000 | 5.381330 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027440 | RBH | 3.761915 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028080 | RBH | 0.359988 | 0.627167 | 0.420685 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027720 | RBH | 0.060873 | 2.480332 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027610 | RBH | 0.175200 | 1.375149 | 0.570309 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027690 | RBH | 0.901061 | 11.720338 | 1.061309 |
