Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0027280 | OGI:06081390 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:30481213-30483633 | ||||||||
| Gene Symbol | RLCK216, OsRLCK216, OsRRK1, RRK1 | ||||||||||
| DNA seq | gtgcgtatccccgcgaaacgcctcgtcgcgttcatatttgctcacggctagcgcggcactcgcgagagcacctcggcgttagtacccatcaatgcctccctcctcctcctcctccgccaccaccaccagctcgccgtctcgtctccctcctccgcttcgcctcctctgatcacctcgctcgccggcgacgccgcgatcgccaccgcaccgcagggcattgtgtcgtcgaggggagagatgaggcctctgtacctgcgcagcagcggcagcttcaagaagctgctcctctccatcggccaccgcggcgccaagaacggcaatggcgacgccgccgccaaggagagatacacgcccgccgccgccgcggcggcgccggagtcgccgcggaagccggcgtggcggtgcttctcctacgaggagatccaccgcgccacgaacgcgttccacgagggcaacctggtggggaagggcgggtcgtcggaggtgtaccgcggcgagctccccgacgggcgggccgtggcggtgaagcggctgatgggcgcgtgggcgtgcgagcggcgggagcgcgacttcctggcggagctcggcacggtggggcacgcgcgccaccccaacgtgtgcgccctcctcggctgctgcgtcgaccgcgacctctacctcgtcttccacttctccggccgcggctccgtctccgccaacctccacggtaccagcgacacgaacgcgacacctaacagcaacagcacgaacgcgccgccattaatggcgttttgacgtttcttgatttgatttgattgctgcatcgcagacgagaagaaggcgccggcgatggggtgggcggtgcggtgcgccattgccgtcggcacggcgagggggctggagtacctgcacaaggggtgccagaggaggatcatccacagggacatcaaggcatccaacgtgcttctcaccgacgacttccagcctcaggtcagtctcttcggagacatccgataaaattggaacgatacaacaaagattagcatggccactacgcaaggatgacacgcacaaatggagaaatagtccaaatttttttaggagctgtatttttctcatgaataagcacaatcttgtgctggttccgttcaaaaaaaaaaaggcgcatctcatccaccacatttccattttttcctcacctcctctgtttcaattgacatgaactgatcgtattatcacagatttccgatttcgggctcgccaagtggctgccgtcggagtggacgcaccgggcgatcgccccgatcgaaggaacattcgggtaaagatttctgtgctcatggtcgagtcgaattcttgctgggtttgacggtgaattttggctgaaatgacatggtttcttccaggtgtttggcaccggagtactacacgcatggcatcgtcgacgagaagacggacgtgttcgcgttcggcgtcttcctcctggagatcatgaccgggagaaagccggtggatggcagccacaagagcttgctcagctgggtaattcagcattcgcgatcagtataactactgtttgatcactgaaaaatactgaaactgtcactgaattgtgaccctgcacttgcaggcgaggccgttcctgaacgaggggaggatcgagtcgctggtggatccgaggatcggcggcgactacgacggcgaggaggcgcggcggctggcgttcgtggcgtcgctgtgcatccgctcgtcggcgaagtggaggccatccatgaccgaggtaacaaacatgattggtcacactctgttccttgatcagaaggcaacgaacgcttgcccatttctcaagtaggattgctgcgatggaacactacattgctttacctacttgcaaatatttttttcatcagcatggttagcatttccatgtaaacagtcataatttagggcagagattcatgacagggtgcccccccaagcacatgtctccatgtagcagtaacccacaaactactcctttgatgatgttgcttggtttacgtgtaacaacacaagtaatttgcaacagcactactagtaatgtaggccataaattggttgtggtagcaggtgctggagctgctggaaggcgtcgagatccggcaagaacggtggacgatgcccgaggcagtggaggacgacgacgacgaggagctatggagattcgatgacctggatgacgaagatgacgaagatgaagaggagttcaacactgcatccccatcttcttgctcatcatctttgagcaattagtagttagtaatagtatctaagattgagtacgcttgtgatgttgttacaagatgaaatttttgatagttactctccactgggcccacttgtaaatagaaaggattttcatcttatcatcatccaacaggctatgaaaagcaagtagtacca
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| CDS seq | atgaggcctctgtacctgcgcagcagcggcagcttcaagaagctgctcctctccatcggccaccgcggcgccaagaacggcaatggcgacgccgccgccaaggagagatacacgcccgccgccgccgcggcggcgccggagtcgccgcggaagccggcgtggcggtgcttctcctacgaggagatccaccgcgccacgaacgcgttccacgagggcaacctggtggggaagggcgggtcgtcggaggtgtaccgcggcgagctccccgacgggcgggccgtggcggtgaagcggctgatgggcgcgtgggcgtgcgagcggcgggagcgcgacttcctggcggagctcggcacggtggggcacgcgcgccaccccaacgtgtgcgccctcctcggctgctgcgtcgaccgcgacctctacctcgtcttccacttctccggccgcggctccgtctccgccaacctccacgacgagaagaaggcgccggcgatggggtgggcggtgcggtgcgccattgccgtcggcacggcgagggggctggagtacctgcacaaggggtgccagaggaggatcatccacagggacatcaaggcatccaacgtgcttctcaccgacgacttccagcctcagatttccgatttcgggctcgccaagtggctgccgtcggagtggacgcaccgggcgatcgccccgatcgaaggaacattcgggtgtttggcaccggagtactacacgcatggcatcgtcgacgagaagacggacgtgttcgcgttcggcgtcttcctcctggagatcatgaccgggagaaagccggtggatggcagccacaagagcttgctcagctgggcgaggccgttcctgaacgaggggaggatcgagtcgctggtggatccgaggatcggcggcgactacgacggcgaggaggcgcggcggctggcgttcgtggcgtcgctgtgcatccgctcgtcggcgaagtggaggccatccatgaccgaggtgctggagctgctggaaggcgtcgagatccggcaagaacggtggacgatgcccgaggcagtggaggacgacgacgacgaggagctatggagattcgatgacctggatgacgaagatgacgaagatgaagaggagttcaacactgcatccccatcttcttgctcatcatctttgagcaattag
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| Protein seq | MRPLYLRSSGSFKKLLLSIGHRGAKNGNGDAAAKERYTPAAAAAAPESPRKPAWRCFSYEEIHRATNAFHEGNLVGKGGSSEVYRGELPDGRAVAVKRLMGAWACERRERDFLAELGTVGHARHPNVCALLGCCVDRDLYLVFHFSGRGSVSANLHDEKKAPAMGWAVRCAIAVGTARGLEYLHKGCQRRIIHRDIKASNVLLTDDFQPQISDFGLAKWLPSEWTHRAIAPIEGTFGCLAPEYYTHGIVDEKTDVFAFGVFLLEIMTGRKPVDGSHKSLLSWARPFLNEGRIESLVDPRIGGDYDGEEARRLAFVASLCIRSSAKWRPSMTEVLELLEGVEIRQERWTMPEAVEDDDDEELWRFDDLDDEDDEDEEEFNTASPSSCSSSLSN |
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| Function | Probable receptor-like serine/threonine-protein kinase At5g57670 [UniProtKB/Swiss-Prot:Q5XF57] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0027280 | OsLima_06g0027280.01 | Chr06 | 30481213 | 30483633 | + | NAM | ||
| CDS seq | atgaggcctctgtacctgcgcagcagcggcagcttcaagaagctgctcctctccatcggccaccgcggcgccaagaacggcaatggcgacgccgccgccaaggagagatacacgcccgccgccgccgcggcggcgccggagtcgccgcggaagccggcgtggcggtgcttctcctacgaggagatccaccgcgccacgaacgcgttccacgagggcaacctggtggggaagggcgggtcgtcggaggtgtaccgcggcgagctccccgacgggcgggccgtggcggtgaagcggctgatgggcgcgtgggcgtgcgagcggcgggagcgcgacttcctggcggagctcggcacggtggggcacgcgcgccaccccaacgtgtgcgccctcctcggctgctgcgtcgaccgcgacctctacctcgtcttccacttctccggccgcggctccgtctccgccaacctccacgacgagaagaaggcgccggcgatggggtgggcggtgcggtgcgccattgccgtcggcacggcgagggggctggagtacctgcacaaggggtgccagaggaggatcatccacagggacatcaaggcatccaacgtgcttctcaccgacgacttccagcctcagatttccgatttcgggctcgccaagtggctgccgtcggagtggacgcaccgggcgatcgccccgatcgaaggaacattcgggtgtttggcaccggagtactacacgcatggcatcgtcgacgagaagacggacgtgttcgcgttcggcgtcttcctcctggagatcatgaccgggagaaagccggtggatggcagccacaagagcttgctcagctgggcgaggccgttcctgaacgaggggaggatcgagtcgctggtggatccgaggatcggcggcgactacgacggcgaggaggcgcggcggctggcgttcgtggcgtcgctgtgcatccgctcgtcggcgaagtggaggccatccatgaccgaggtgctggagctgctggaaggcgtcgagatccggcaagaacggtggacgatgcccgaggcagtggaggacgacgacgacgaggagctatggagattcgatgacctggatgacgaagatgacgaagatgaagaggagttcaacactgcatccccatcttcttgctcatcatctttgagcaattag
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| Protein seq | MRPLYLRSSGSFKKLLLSIGHRGAKNGNGDAAAKERYTPAAAAAAPESPRKPAWRCFSYEEIHRATNAFHEGNLVGKGGSSEVYRGELPDGRAVAVKRLMGAWACERRERDFLAELGTVGHARHPNVCALLGCCVDRDLYLVFHFSGRGSVSANLHDEKKAPAMGWAVRCAIAVGTARGLEYLHKGCQRRIIHRDIKASNVLLTDDFQPQISDFGLAKWLPSEWTHRAIAPIEGTFGCLAPEYYTHGIVDEKTDVFAFGVFLLEIMTGRKPVDGSHKSLLSWARPFLNEGRIESLVDPRIGGDYDGEEARRLAFVASLCIRSSAKWRPSMTEVLELLEGVEIRQERWTMPEAVEDDDDEELWRFDDLDDEDDEDEEEFNTASPSSCSSSLSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0693200 | RBH | 0.0 | 0.159780 | 0.560825 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g47820 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0693200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027380 | RBH | 0.0 | 0.0 | 0.385336 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027170 | RBH | 0.0 | 0.675352 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027320 | RBH | 0.0 | 0.0 | 1.438747 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026890 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027390 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0455800 | RBH | 1.5655445 | 0.6687085 | 1.807426 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026790 | RBH | 0.0 | 0.0 | 0.078700 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0438100 | RBH | 1.909289 | 0.7721585 | 3.7508825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004030 | RBH | 0.066965 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026950 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027580 | RBH | 0.0 | 0.100477 | 0.586297 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027190 | RBH | 0.0 | 0.884355 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027120 | RBH | 0.0 | 0.0 | 0.793072 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027200 | RBH | 0.0 | 0.0 | 0.0 |
