Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0027070 | OGI:06081030 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:30288782-30291757 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcgccgcctcccgcccctggccccgttcgccacctcctccgccgccgccgctccatccacctccaccccggacgtcgtcgcggagctcggccgcatcctctccacccgtcgctggaacaagggccgcgcgtacaagcgcctcgccccctccgtcaccgccgcgcacgtcgccgacctcttccgcgcggagtccaccgcccccgagcccgccaccgccctcgccttcttcgagtggctcgcccgccgcgatgggttccgccacaccgccgactcccacgcggcgctcctccacctcctgtcgcgccgacgcgcccccgcgcagtacgagaggctcgtcgtgtccatgctcaattgctccgacaccgcggaggacatgcgcgtctcggccgacgccattcaggcaatccgtcgaacgggtagcgcgcgccttgcgctgtccccgaagtgctacaacttcgcccttcgatcgctggcgcggttcgacatgacggagtatatggggagggtgtactcgcagcttgttcaggatggtctgttgccggacacagtgacgtacaataccatgattaagtcatactgcaaggaaggtgatctcaccaccgcgcaccggtatttcaggctgttgctggagggtgggttggaaccagagacgttcacatgtaatgcattggtgttgggttactgccgaacgggtgaattgaggaaggcttgctggctattcctgatgatgccgctgatgggttgccagagaaatgagtactcctacaccattttaattcaggggctctgtgaggctaaatgtgtaagggaggcacttgtgctgttcttgatgatgaagagagatggctgctctccaaatgtgcgcgcttttacattcttgatcagcggactttgcaagtcaggtagggttggcgatgccaggttgttgtttgatgcaatgccccagaatggtgttgttccaagtgttatgacatacaatgcaatgattgttgggtactctaagttaggtaggatgaatgatgcattgaagattaaggagctgatggaaaaaaatggctgccacccagatgattggacatacaacactttgatttatggcctatgtgaccaaaagacagaagaagctgaagaattgctgaataatgctgttaaggaaggttttacacctacagttgttacattcactaacttgatcaatgggtattgcatggctgaaaaatttgatgatgcactcaggatgaagaataagatgatgtcaagcaagtgtaaacttgatttacaagtttttggaaagctgataaatagcctcattaagaaggataggctaaaagaggctaaagaactgttgaacgaaatttctgcaaatggtttagtcccaaatgtcatcacctacacatctataattgatgggtattgcaagagtgggaaggttgatattgcgctagaggtcttgaagatgatggaacgtgatggttgccagccaaatgcctggacctacaattctctgatgtatgggttagttaaggataagaaactacataaggcaatggctctattaactaagatgcaaaaagacgggataattcctaatgttatcacctacaccactttacttcaaggtcagtgcgatgaacatgatttcgataatgctttcaggttatttgaaatgatggagcagaatggtttgaagcctgatgagcatgcatatgctgtgttaactgatgcactgtgtaaagctggaagagctgaagaagcttattcatttattgttagaaaaggagtagctctaacaaaggtatactatactactttaattgatggtttcagtaaggcaggcaatactgactttgctgcgacccttatagagaggatgattgatgagggttgcacaccagattcatacacgtacagtgtactgctgcatgctttatgcaaacaaaaaaggctgaatgaagctctgccaatactggatcagatgtctctcaggggaataaagtgtaccatttttgcctacacaatactaattgatgaaatgctcagggaaggaaagcatgaccatgctaaaaggatgtacaatgaaatgacttcatcaggacataagcctagtgctaccacatatactgtattcattaactcatactgcaaggaaggtcgactggaggatgctgaggatttaatcttgaaaatggaaagagaaggtgttgcccctgatgtggtgacctacaacatactcattgatggctgtgggcatatggggtatatagatcgtgcattttctactctgaagcgcatggtgggtgcatcatgtgagccaaattactggacctattgtcttttgctcaagcatcttctaaagggcaatctggcttatgttcgttctgtagatacttctggcatgtggaacttgatagagttggatattacctggcaacttcttgaaaggatggtgaagcatggactaaatcccaccgtaacgacatacagttctctcattgcaggattctgcaaagctggacgtcttgaagaagcatgccttcttctagatcatatgtgcggaaaaggtctatctcccaatgaagacatatacacattgcttatcaagtgctgttgcgataccaagttctttgaaaaggctttgtcgtttgttagcatcatgtcagaatgtggctttcaacctcaactcgagtcctacaggcttcttgtggtaggcctttgtaatgaaggagactttgagaaggttaaatctctgttctgtgacttgcttgaactgggctataatcatgatgaggttgcatggaaaattctaaatgatggtttgctcaaagctggctatgttgatatatgtttccagatgctgtccattatggagaaaagatactgttgcattagttctcaaacatatgcattggtgacaaataaaatgcatgaagtatccagtagccttgttagtgaagtcagagaagaagctaggtga
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| CDS seq | atgcgccgcctcccgcccctggccccgttcgccacctcctccgccgccgccgctccatccacctccaccccggacgtcgtcgcggagctcggccgcatcctctccacccgtcgctggaacaagggccgcgcgtacaagcgcctcgccccctccgtcaccgccgcgcacgtcgccgacctcttccgcgcggagtccaccgcccccgagcccgccaccgccctcgccttcttcgagtggctcgcccgccgcgatgggttccgccacaccgccgactcccacgcggcgctcctccacctcctgtcgcgccgacgcgcccccgcgcagtacgagaggctcgtcgtgtccatgctcaattgctccgacaccgcggaggacatgcgcgtctcggccgacgccattcaggcaatccgtcgaacgggtagcgcgcgccttgcgctgtccccgaagtgctacaacttcgcccttcgatcgctggcgcggttcgacatgacggagtatatggggagggtgtactcgcagcttgttcaggatggtctgttgccggacacagtgacgtacaataccatgattaagtcatactgcaaggaaggtgatctcaccaccgcgcaccggtatttcaggctgttgctggagggtgggttggaaccagagacgttcacatgtaatgcattggtgttgggttactgccgaacgggtgaattgaggaaggcttgctggctattcctgatgatgccgctgatgggttgccagagaaatgagtactcctacaccattttaattcaggggctctgtgaggctaaatgtgtaagggaggcacttgtgctgttcttgatgatgaagagagatggctgctctccaaatgtgcgcgcttttacattcttgatcagcggactttgcaagtcaggtagggttggcgatgccaggttgttgtttgatgcaatgccccagaatggtgttgttccaagtgttatgacatacaatgcaatgattgttgggtactctaagttaggtaggatgaatgatgcattgaagattaaggagctgatggaaaaaaatggctgccacccagatgattggacatacaacactttgatttatggcctatgtgaccaaaagacagaagaagctgaagaattgctgaataatgctgttaaggaaggttttacacctacagttgttacattcactaacttgatcaatgggtattgcatggctgaaaaatttgatgatgcactcaggatgaagaataagatgatgtcaagcaagtgtaaacttgatttacaagtttttggaaagctgataaatagcctcattaagaaggataggctaaaagaggctaaagaactgttgaacgaaatttctgcaaatggtttagtcccaaatgtcatcacctacacatctataattgatgggtattgcaagagtgggaaggttgatattgcgctagaggtcttgaagatgatggaacgtgatggttgccagccaaatgcctggacctacaattctctgatgtatgggttagttaaggataagaaactacataaggcaatggctctattaactaagatgcaaaaagacgggataattcctaatgttatcacctacaccactttacttcaaggtcagtgcgatgaacatgatttcgataatgctttcaggttatttgaaatgatggagcagaatggtttgaagcctgatgagcatgcatatgctgtgttaactgatgcactgtgtaaagctggaagagctgaagaagcttattcatttattgttagaaaaggagtagctctaacaaaggtatactatactactttaattgatggtttcagtaaggcaggcaatactgactttgctgcgacccttatagagaggatgattgatgagggttgcacaccagattcatacacgtacagtgtactgctgcatgctttatgcaaacaaaaaaggctgaatgaagctctgccaatactggatcagatgtctctcaggggaataaagtgtaccatttttgcctacacaatactaattgatgaaatgctcagggaaggaaagcatgaccatgctaaaaggatgtacaatgaaatgacttcatcaggacataagcctagtgctaccacatatactgtattcattaactcatactgcaaggaaggtcgactggaggatgctgaggatttaatcttgaaaatggaaagagaaggtgttgcccctgatgtggtgacctacaacatactcattgatggctgtgggcatatggggtatatagatcgtgcattttctactctgaagcgcatggtgggtgcatcatgtgagccaaattactggacctattgtcttttgctcaagcatcttctaaagggcaatctggcttatgttcgttctgtagatacttctggcatgtggaacttgatagagttggatattacctggcaacttcttgaaaggatggtgaagcatggactaaatcccaccgtaacgacatacagttctctcattgcaggattctgcaaagctggacgtcttgaagaagcatgccttcttctagatcatatgtgcggaaaaggtctatctcccaatgaagacatatacacattgcttatcaagtgctgttgcgataccaagttctttgaaaaggctttgtcgtttgttagcatcatgtcagaatgtggctttcaacctcaactcgagtcctacaggcttcttgtggtaggcctttgtaatgaaggagactttgagaaggttaaatctctgttctgtgacttgcttgaactgggctataatcatgatgaggttgcatggaaaattctaaatgatggtttgctcaaagctggctatgttgatatatgtttccagatgctgtccattatggagaaaagatactgttgcattagttctcaaacatatgcattggtgacaaataaaatgcatgaagtatccagtagccttgttagtgaagtcagagaagaagctaggtga
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| Protein seq | MRRLPPLAPFATSSAAAAPSTSTPDVVAELGRILSTRRWNKGRAYKRLAPSVTAAHVADLFRAESTAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLVVSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYALVTNKMHEVSSSLVSEVREEAR |
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| Function | Pentatricopeptide repeat-containing protein At5g65560 [UniProtKB/Swiss-Prot:Q9LSL9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0027070 | OsLima_06g0027070.01 | Chr06 | 30288782 | 30291757 | + | NAM | ||
| CDS seq | atgcgccgcctcccgcccctggccccgttcgccacctcctccgccgccgccgctccatccacctccaccccggacgtcgtcgcggagctcggccgcatcctctccacccgtcgctggaacaagggccgcgcgtacaagcgcctcgccccctccgtcaccgccgcgcacgtcgccgacctcttccgcgcggagtccaccgcccccgagcccgccaccgccctcgccttcttcgagtggctcgcccgccgcgatgggttccgccacaccgccgactcccacgcggcgctcctccacctcctgtcgcgccgacgcgcccccgcgcagtacgagaggctcgtcgtgtccatgctcaattgctccgacaccgcggaggacatgcgcgtctcggccgacgccattcaggcaatccgtcgaacgggtagcgcgcgccttgcgctgtccccgaagtgctacaacttcgcccttcgatcgctggcgcggttcgacatgacggagtatatggggagggtgtactcgcagcttgttcaggatggtctgttgccggacacagtgacgtacaataccatgattaagtcatactgcaaggaaggtgatctcaccaccgcgcaccggtatttcaggctgttgctggagggtgggttggaaccagagacgttcacatgtaatgcattggtgttgggttactgccgaacgggtgaattgaggaaggcttgctggctattcctgatgatgccgctgatgggttgccagagaaatgagtactcctacaccattttaattcaggggctctgtgaggctaaatgtgtaagggaggcacttgtgctgttcttgatgatgaagagagatggctgctctccaaatgtgcgcgcttttacattcttgatcagcggactttgcaagtcaggtagggttggcgatgccaggttgttgtttgatgcaatgccccagaatggtgttgttccaagtgttatgacatacaatgcaatgattgttgggtactctaagttaggtaggatgaatgatgcattgaagattaaggagctgatggaaaaaaatggctgccacccagatgattggacatacaacactttgatttatggcctatgtgaccaaaagacagaagaagctgaagaattgctgaataatgctgttaaggaaggttttacacctacagttgttacattcactaacttgatcaatgggtattgcatggctgaaaaatttgatgatgcactcaggatgaagaataagatgatgtcaagcaagtgtaaacttgatttacaagtttttggaaagctgataaatagcctcattaagaaggataggctaaaagaggctaaagaactgttgaacgaaatttctgcaaatggtttagtcccaaatgtcatcacctacacatctataattgatgggtattgcaagagtgggaaggttgatattgcgctagaggtcttgaagatgatggaacgtgatggttgccagccaaatgcctggacctacaattctctgatgtatgggttagttaaggataagaaactacataaggcaatggctctattaactaagatgcaaaaagacgggataattcctaatgttatcacctacaccactttacttcaaggtcagtgcgatgaacatgatttcgataatgctttcaggttatttgaaatgatggagcagaatggtttgaagcctgatgagcatgcatatgctgtgttaactgatgcactgtgtaaagctggaagagctgaagaagcttattcatttattgttagaaaaggagtagctctaacaaaggtatactatactactttaattgatggtttcagtaaggcaggcaatactgactttgctgcgacccttatagagaggatgattgatgagggttgcacaccagattcatacacgtacagtgtactgctgcatgctttatgcaaacaaaaaaggctgaatgaagctctgccaatactggatcagatgtctctcaggggaataaagtgtaccatttttgcctacacaatactaattgatgaaatgctcagggaaggaaagcatgaccatgctaaaaggatgtacaatgaaatgacttcatcaggacataagcctagtgctaccacatatactgtattcattaactcatactgcaaggaaggtcgactggaggatgctgaggatttaatcttgaaaatggaaagagaaggtgttgcccctgatgtggtgacctacaacatactcattgatggctgtgggcatatggggtatatagatcgtgcattttctactctgaagcgcatggtgggtgcatcatgtgagccaaattactggacctattgtcttttgctcaagcatcttctaaagggcaatctggcttatgttcgttctgtagatacttctggcatgtggaacttgatagagttggatattacctggcaacttcttgaaaggatggtgaagcatggactaaatcccaccgtaacgacatacagttctctcattgcaggattctgcaaagctggacgtcttgaagaagcatgccttcttctagatcatatgtgcggaaaaggtctatctcccaatgaagacatatacacattgcttatcaagtgctgttgcgataccaagttctttgaaaaggctttgtcgtttgttagcatcatgtcagaatgtggctttcaacctcaactcgagtcctacaggcttcttgtggtaggcctttgtaatgaaggagactttgagaaggttaaatctctgttctgtgacttgcttgaactgggctataatcatgatgaggttgcatggaaaattctaaatgatggtttgctcaaagctggctatgttgatatatgtttccagatgctgtccattatggagaaaagatactgttgcattagttctcaaacatatgcattggtgacaaataaaatgcatgaagtatccagtagccttgttagtgaagtcagagaagaagctaggtga
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| Protein seq | MRRLPPLAPFATSSAAAAPSTSTPDVVAELGRILSTRRWNKGRAYKRLAPSVTAAHVADLFRAESTAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLVVSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYALVTNKMHEVSSSLVSEVREEAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.111350 | 0.040829 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0690900 | RBH | 0.655214 | 0.461888 | 0.200509 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g47570 | RBH | 0.443090 | 0.310658 | 0.051615 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0690900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027150 | RBH | 0.105266 | 0.0 | 0.674606 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026960 | RBH | 0.138506 | 0.0 | 0.534248 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027140 | RBH | 0.547781 | 2.247438 | 3.460213 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026700 | RBH | 0.095455 | 0.061431 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027190 | RBH | 1.404708 | 2.320629 | 3.973211 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0453100 | RBH | 1.4718875 | 3.372398 | 1.232461 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026590 | RBH | 0.102488 | 0.0 | 0.227771 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0435200 | RBH | 1.2483225 | 2.9924675 | 5.799078 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005660 | RBH | 1.369220 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027150 | RBH | 0.210382 | 2.315285 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026750 | RBH | 3.218209 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027400 | RBH | 0.185607 | 0.159107 | 0.309421 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027010 | RBH | 0.0 | 0.692756 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G026910 | RBH | 0.339298 | 0.915404 | 0.486811 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0026990 | RBH | 0.750348 | 0.0 | 1.185120 |
