Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0026720 | OGI:06080370 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:30069383-30076587 | ||||||||
| Gene Symbol | Os_F0663 | ||||||||||
| DNA seq | agaacatatttcactgtaaactcatatgtatagctaaagttgctaaaatgccaaatacatcataaattgacagtgaaataccaagtcattcaatcaccttttttcaagtaaaacagaaggaaaaaagaaatcaaggtatgacgagactgtacttgtttctgcacatgttatcttgtcctgtatctcttttccaacctattaatgctccagatctgtagaaccataagcagctcgactattgactgaacactagttcgtcttcgaggtaaggagttctgaatgaaatgacttgactgtagaatcatcagcacaatcagttagctggacatttgcgggaacctggagtcggaaggggcgatctaccggtactggtatgggacgaactagtatcagcttctggaggagtttggccttcttgaacagaaactgcagcagccgaatctcattccagtcgtacttgaagttcgtcatctttaccacatcaagcttttcgaagccatcctgttgttccccctccacattctctgagctagtgttctccgtgtatgtgcaatctctttctgggagctgaaatcacaaagggataatttggaatcatcagaaagaagaaactatactaacattggctccactcgaacagacaaaatagtcaaacagtaacagatcgagacgcaatgcaagcaatggaatagcaggtggtgagtggtgacctgcacaaagagcttcgtcagctgagggtagtagccgcaggtgttcaggaatcgacgaacgtcactgaggttgatcggttccaatttgaacatgagcaactgaagctctcttaaactcctcaagtttgtctgaatggtattacccgccacagttacagcctgaaaatcagaagtagaaaacaaccttgtgaatcaagtggaaacaacacgattgagatgaaaatgaaatcggatgaaattaacatgatcgagagaaaaaaaaaagaacgaaCccggagagaagtgctgcacagggtgaggaaggtgaggttcgagagatctgggaggcgtttgaacgaattttcgggccccggggtggtagattggcttctcgggaagccgatgaagaggtcggcaagcgagtcgttgtccggaagggacagtgacgtcaggatgttaccgctgtagcgaaaggagcgcaggtgtttgccggcggtcagccgtcggacgcgttcgcagtccatgacggtgaggctcatcaggtgctctccagcggtgtcgacgtcgatttgggtgatggttttgcatccgcgcaggtcgaggacgcggaggatggggcacgcgccgactagattcttgaggtcgtccattttattgatagtggagttcttgatgtggatttcctcgagcgtggggaaggagacgccttcacaaaacttgccctggaaatgacccaacgcgacgccgattagcgagaggcgcacgagctgtttgctcgtcaggtgcatcttaaacttgcggcccgctcctcctcgatcactgatgtggatgacctcgggagagcacttgccggcgtattcgaggcaggaattgaagtattctctctgaacattttttctctcgacgacgaggaggaagaagtagcggaggcggcgtttcggctcctgctgccccgcgcgttcctctagcttgctcagcgcatcgccgtcggtggggagctcgacgtcgacggcgacatccctccagtagaggccgtacatctcccgccaccgtttgcagagcgaacccatgaggatcaccgacttgatcgggaggaagtcgaggatgcgcgcccgagccttctcctgcagcgccgtgatgcggtcgccgtccaccttcgccgcctccgcatccttctccggcagctgatccagcttgcggtcgacgttgttggtgctaaatatttcctaagcaggggatcagagaagaggagcagagaagcttgtgctagttttaactggtttctttacttgcttgcttgagggctgaacagtacacttgcttgtacgttgggcagcacaccatcatcagtctatacacatgcactggctttctatttataggcttgataaaccgacatgtaggaagcttcaggacctagctagagacttgtagtactactacattgtcaaacttcactggtactagtactactgtaaaatcacatcatgcatgtctacacactacactgttctagaaaatttacagagcaaggacttcaaccttgactttagtttcacgaatagtagagagggttagagagtaggctggtatgttctagaaataaattaactccaacaaactcccccttaatttatttcttgcaaactccgatgagctctctgtcgcggacaaatttttctttggataaagccttggtaaatatatctgccaactgctcatcagttcggcaaaattccaatttaacttcctggcgatcaactgcttcccggatataatgatacttgatagcaatatgtttcgtcctgtcatgactgactggattttcgctgatcgcaattgcagacttactgtcgcaataaattgtagtaggctgatattgcttctcgcccagatcttccataattctcctcaaccaaacaacttgtgaaacagcttttgatgctgctacatattctgcttcggctgaagataaagcgacaatattttgttttttttaagaccaggagcacatacctgaaccaagtgagaaagcgtagcctgatgtgctcttcatatcgtcaagacatccagcccagtcactatccgtgtagccaattaattttgattctttaactggcttataccatataccataatctgcggtccctttgatataccgcaaaactctctttgcagcggtaaaatttaattgacttgggctagacatatatcttgataataaacttgccgcaaacataatatccggtcgtgttgcggtcaaatataataaacttccaactaagcttccgtaaattgttggatctgccttatcagctccatctctagccttttgcttttcatttggcaacaagggggttgtaactgacttgcagttatccatcttaaatttcttcagaatattttcagcatatttcctttgtgatataaatattccttcatcactttgatgcacttccataccgagaaaatagtggagcaagcctagatcactcatttcatatgtatgcatcatatcttttttagagtcttgcatcatcttctcactattgccagtatatatcaaatcgtcaacatagagtgagacgattaggatatccgtacctgttttgttgacatatagagtaggctcacttatgctcttggcaaatcctttctgaataaagtacttgtcaatttgactataccacgctctaggcgcttgctttaatccatataaagccttcttgagtctgaataccttatttctcccccttggactgaaaacccttcaggttgttcaacatagatttcttcatcaagataaccatttaagaaagccgatttaacatcaagttgatatatcttccacctcttttgagctgctagagcaattatggtacgaattgtctctagcctggcaacaggagcatatgtctcataataatcaatcccaggctttttcttaaagccttttgccacaagtcttgccttgtatttctgaactgagccatctggatttaattttgtcttataaacccacttaactccaataacttctctgtccctaggacgatcaaccaactcccatgtattatttttctcaatcatatgaatctcatcttccatggcctttatccaattatcatgtttttctgcttcttggaaactttgtggctcaacaactgaataattgcaaaattcatgttgttctgaccctctttgttgagaagtagattctaataattcaaccatacttcttacccgtcttggagctgattccggtgtagaaatttgctcttcactgctcgggcttgaatctgaactagcacttgagcttgacattggacttgatggctgtggacttggagtatgatcttccacttcatgagtgccatgcatatgtggttggcctagtgtgatggtagtggttggcaataatggagtactagaggcttctggagacttccagttccatgtagcactctcatcaaaaatcacatctctgctaatgataattttctttttctccaaattataaagtctatagcctttgataccatcagcatagccaacaaatatgcaccgatcacttttattatcaaattttactctcttttgtgctggcacttgagcatagcaaatgcaaccaaatactctcatatgaccaatgacaggctttttaccataccaagcttcaaaaggtgtacggtttggtactgccttggtaggacttctatttaaaatataaactgcagtattaactgcttcagcccagaaagatttaggcatacctttgtcttggagcatagaattggccatatcattgatcgtccgatttttccgttctgcaactccattttgttgcgcactatagcctgtcgtcagctgtcttcggattccagcattttcacaatatttctcaaattcttttgagatatattctcctccttgatcactgcgcaatactttaatttttcgattactctgattttccaccatgaccttgaattttttgaatgtctccagggctgcagatttttcttttagaaaatatacccagatcattcttgtataatcatcaataaatgtgataaagtaccaatttcctccttctgacattgttggcactttaccaactatatcagtatgcactagttcgaatggtgcacttgctctccaagctccactgtgtgggaaagaagcccggatttgttttccaaatacacaaccttcacatgggtcagacttgagagtaataaatggaaggccttgaaccataccttttgtcctgagtagcttcaatgctctgtaattaagatgacccattcttttgtgccataaatcggaaatatcaacttcacttctgagagccatttgagttgtatgattcatccttaatagaaaatttctattcttctccatatttattttagcgaccagacgattatttttacggtccaatattttgcaagaaaatcttcaaaataaaccgcgtacccgtgttctagaagctgcccaatacttagcaaattttgctttaaatcgggtaccaacaaaacatcttttataaattttggaccgtctgctgtttgaacagcaaccgtacctttgccttcactttgggctatagagccatttcccatgtggatctttgcatgatacgatgaatccatttctcgaaataaatttggatcagcggccatatggtttgtacaaccactgtcaataacccaaacatcatctttttcttcttgagcagtatggcaagagaaaaccatttcttcagatttttccttttcttgtgaaaaattagcccgattaatttctcgagttctgcaatattttgcaatatggccctttcttttgcacttgttgcaggtcattttcttccagcacatatctgtagtatgactagatttttggcaaatgtcacaccacaaatttgaactggacgtacctttttctcttctctcttgaccatcttccttctgcctggaaaagccatttttctgaaaataaccacggtctcgcattggaaatccatttttttgaaaatttccgcgaaaccttgagttttgaggcctgaagctcaactttgactgaaatgcattttcaatagagctcccttcgcgctgaagctttctttcttcgtgagattccaacgagctcattagttgctgaattgtgagagtcgacaagtctttcgactcctcaatagcagtaacaatgtactcgtatttttcaggcagactgattaaaattttctccacaaccttctggtcgtttatatcttcaccatagaggcgcatctgattaacgatctcaataactcttgagaaatagtcttttaccttctctgactccttcattagcaaattctgaaattgtcttctcaaggtttgaagcttcaccgcaagtaccttctgagatccttgaaactcctccttcaacttgtcccatgcttccttggatttcttggcgccaataatacgcggaaatagactttctgcaactccttgttggatcaagaacaaggccttggcgtccgacatccgatcctctgccaaagactttttctgttccgccgtaagagtttctccagcggaatactcttgatagccattctcaacaatatcccacaatccttgagatagcagcagcgtccgcatcttgatgctccatatatcataattttctcctgcaaatacaggaaccatagactgcgccattgtggcgcccgaacttgaagccatacttgtagcttcaattgacaataccgatacgccgtgctactccgtcacgccctactcgaacctgggcgctctgataccagttgttggtgctaaatatttcctaagcaagggatcagagaagaggagcagagaagcttgtgctagttttaactggtttctttacttgcttgcttgagggctaaacagtacacttgcttgtacgttgggcagcacaccatcatcagtctatacacatgcactggctttctatttataggcttgataaaccgacatgtaggaagcttcaggacctagctagagacttgtagtactactacattgtcaaacttcactggtactagtactactgtaaaatcacatcatgcatgtctacacactacactgttctagaaaatttacagagcaaggacttcaaccttgactttagtttcacgagtagtagagagggttagagagtaggctggtatgttctagaaataaattaactccaacagacgtccaccttcgccgcctccgcatccttctccggcggctgatccaggttgcggtcgtcgtccacctccgccgcctcttcgccatcttctagatttagatagcccttccactggtcggtgttagaatcgtcgtcgctggattggctcgccttcgccgcctctgcatccttctccggcggcgccaggttgcagtcgtcgtccacttacgtcgcctcttcgccaccatctaggtttagaaagtccttccactcgtcggagttggaatcgtcgtcgccggattggctggc
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| CDS seq | atgggttcgctctgcaaacggtggcgggagatgtacggcctctactggagggatgtcgccgtcgacgtcgagctccccaccgacggcgatgcgctgagcaagctagaggaacgcgcggggcagcaggagccgaaacgccgcctccgctacttcttcctcctcgtcgtcgagagaaaaaatgttcagagagaatacttcaattcctgcctcgaatacgccggcaagtgctctcccgaggtcatccacatcagtgatcgaggaggagcgggccgcaagtttaagatgcacctgacgagcaaacagctcgtgcgcctctcgctaatcggcgtcgcgttgggtcatttccagggcaagttttgtgaaggcgtctccttccccacgctcgaggaaatccacatcaagaactccactatcaataaaatggacgacctcaagaatctagtcggcgcgtgccccatcctccgcgtcctcgacctgcgcggatgcaaaaccatcacccaaatcgacgtcgacaccgctggagagcacctgatgagcctcaccgtcatggactgcgaacgcgtccgacggctgaccgccggcaaacacctgcgctcctttcgctacagcggtaacatcctgacgtcactgtcccttccggacaacgactcgcttgccgacctcttcatcggcttcccgagaagccaatctaccaccccggggcccgaaaattcgttcaaacgcctcccagatctctcgaacctcaccttcctcaccctgtgcagcacttctctccgggctgtaactgtggcgggtaataccattcagacaaacttgaggagtttaagagagcttcagttgctcatgttcaaattggaaccgatcaacctcagtgacgttcgtcgattcctgaacacctgcggctactaccctcagctgacgaagctctttgtgcagctcccagaaagagattgcacatacacggagaacactagctcagagaatgtggagggggaacaacaggatggcttcgaaaagcttgatgtggtaaagatgacgaacttcaagtacgactggaatgagattcggctgctgcagtttctgttcaagaaggccaaactcctccagaagctgatactagttcgtcccataccagtaccggtagatcgccccttccgactccaggttcccgcaaatgtccagctaactgattgtgctgatgattctacagtcaagtcatttcattcagaactccttacctcgaagacgaactag
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| Protein seq | MGSLCKRWREMYGLYWRDVAVDVELPTDGDALSKLEERAGQQEPKRRLRYFFLLVVERKNVQREYFNSCLEYAGKCSPEVIHISDRGGAGRKFKMHLTSKQLVRLSLIGVALGHFQGKFCEGVSFPTLEEIHIKNSTINKMDDLKNLVGACPILRVLDLRGCKTITQIDVDTAGEHLMSLTVMDCERVRRLTAGKHLRSFRYSGNILTSLSLPDNDSLADLFIGFPRSQSTTPGPENSFKRLPDLSNLTFLTLCSTSLRAVTVAGNTIQTNLRSLRELQLLMFKLEPINLSDVRRFLNTCGYYPQLTKLFVQLPERDCTYTENTSSENVEGEQQDGFEKLDVVKMTNFKYDWNEIRLLQFLFKKAKLLQKLILVRPIPVPVDRPFRLQVPANVQLTDCADDSTVKSFHSELLTSKTN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0026720 | OsLima_06g0026720.01 | Chr06 | 30069383 | 30076587 | - | NAM | ||
| CDS seq | atgggttcgctctgcaaacggtggcgggagatgtacggcctctactggagggatgtcgccgtcgacgtcgagctccccaccgacggcgatgcgctgagcaagctagaggaacgcgcggggcagcaggagccgaaacgccgcctccgctacttcttcctcctcgtcgtcgagagaaaaaatgttcagagagaatacttcaattcctgcctcgaatacgccggcaagtgctctcccgaggtcatccacatcagtgatcgaggaggagcgggccgcaagtttaagatgcacctgacgagcaaacagctcgtgcgcctctcgctaatcggcgtcgcgttgggtcatttccagggcaagttttgtgaaggcgtctccttccccacgctcgaggaaatccacatcaagaactccactatcaataaaatggacgacctcaagaatctagtcggcgcgtgccccatcctccgcgtcctcgacctgcgcggatgcaaaaccatcacccaaatcgacgtcgacaccgctggagagcacctgatgagcctcaccgtcatggactgcgaacgcgtccgacggctgaccgccggcaaacacctgcgctcctttcgctacagcggtaacatcctgacgtcactgtcccttccggacaacgactcgcttgccgacctcttcatcggcttcccgagaagccaatctaccaccccggggcccgaaaattcgttcaaacgcctcccagatctctcgaacctcaccttcctcaccctgtgcagcacttctctccgggctgtaactgtggcgggtaataccattcagacaaacttgaggagtttaagagagcttcagttgctcatgttcaaattggaaccgatcaacctcagtgacgttcgtcgattcctgaacacctgcggctactaccctcagctgacgaagctctttgtgcagctcccagaaagagattgcacatacacggagaacactagctcagagaatgtggagggggaacaacaggatggcttcgaaaagcttgatgtggtaaagatgacgaacttcaagtacgactggaatgagattcggctgctgcagtttctgttcaagaaggccaaactcctccagaagctgatactagttcgtcccataccagtaccggtagatcgccccttccgactccaggttcccgcaaatgtccagctaactgattgtgctgatgattctacagtcaagtcatttcattcagaactccttacctcgaagacgaactag
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| Protein seq | MGSLCKRWREMYGLYWRDVAVDVELPTDGDALSKLEERAGQQEPKRRLRYFFLLVVERKNVQREYFNSCLEYAGKCSPEVIHISDRGGAGRKFKMHLTSKQLVRLSLIGVALGHFQGKFCEGVSFPTLEEIHIKNSTINKMDDLKNLVGACPILRVLDLRGCKTITQIDVDTAGEHLMSLTVMDCERVRRLTAGKHLRSFRYSGNILTSLSLPDNDSLADLFIGFPRSQSTTPGPENSFKRLPDLSNLTFLTLCSTSLRAVTVAGNTIQTNLRSLRELQLLMFKLEPINLSDVRRFLNTCGYYPQLTKLFVQLPERDCTYTENTSSENVEGEQQDGFEKLDVVKMTNFKYDWNEIRLLQFLFKKAKLLQKLILVRPIPVPVDRPFRLQVPANVQLTDCADDSTVKSFHSELLTSKTN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0685200 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g47120 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0685200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0026770 | RBH | 0.196337 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026610 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0026770 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026400 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0026870 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0449200 | RBH | 0.005508 | 0.0090015 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026270 | RBH | 0.0 | 0.0 | 0.068129 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0431000 | RBH | 0 | 0 | 0.025473 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004980 | RBH | 0.089707 | 0.229820 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0026810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027080 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0026690 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G026590 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0026680 | RBH | 0.0 | 0.0 | 0.0 |
