Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0025910 | OGI:06078210 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:29321058-29324642 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accgctttaagagagtcgtgcaactttattgaggatgattattcaagaagtcgatacacacctataaaaatgcacttacattaaccatatatctagctcattatacctttttctactccaacatgaattactggatgtagatgaagatccctttttctacgaacgttcatcccgaattcctcttccatgtccaacccatctggtgtaacactaggaggaagatgccaatcaaaatggtataggagagcagtgagggccaactcgagtgtggcatgtgcaaatgttatgcctggacatattctccgtcctcccccaaatggtatgaattcatagtttgtgcctccaaaatcaactgtgatttcctcaaaacgctctggcaaaaatacttccgcatcatcccaatatctgtggtctctaccgatggcccatacattcaccaacatgattgacccttttggaatgttatatcctaatattttgcatgactcttgacactcttttggcataagtaggggtgctacaggatgcagtcttagtgtttccttgattatattctttgggtaacttaaatttatcaagtcatcttctgttattctagatcttccttgcaaagcaagtcgtatctgtgcttgcgccttctgcatcacttgaggattcttcacaagctctgacatggcccattcaagtattgttgatgttgtttcgcttccacctgcaaacatgtcctggccaatgcatgtcatgcgtatatgttagcacatgttgaaattaaggagggtacgttagcatattgcaaggttagatggattaatttcatccacttttgtgcattgaagacatgaaagcacgagacggccattcatgcacaaatatataattcttttggtattagaataagtttgacttttttaaTgatctttgaagtgcgattttgacaataattttgtattagaataagtttattaaaaaggatactatgCttatgagattaaaaaagcacttttcaagagtgatatacatatatactattttttatgttataaaactatgtacttttcaaagtataataatcaaagttttgactggttatatcagtccaagacattatttatcttatgaccaaagggagtaactatgacaactggcattagaggtccaagaattataaccaatcgtactaccatcagtcgtgctatgcatggctcgcctatcggccccttttaaataccacatgatatgtaaataagcaaagaatattattaccctcctactgattgtttagcatgttctgatttcaaaatatcaagatttatAgatttgtgtcaataattgaattacaaaaaTgctatttaacaggatcccatcccacttgcttatatatcAtctattcccTtcggcatctcgagcgctgcaagtgTggtcgcctccatcctcccatagtgcaacattgctgccgtaactcctccttcccctggctgtCggagccctttgatctctcatctttgtccaccatcgtaatcaaccttcttcccttgccctgactcccattgccctcatcccctccaccaatttactcctttccgcctacatccttttaaatccggtgtactcgacaataagacggtgggagcggaccagctgaatctaTtcgcgaaggggaacatttcgggttgtggtggcactggtggggaagcgcctaggaAccaccgggtgggctcagtggtggaccttgtggagattgggggagcaagcgccacacatgaggtttcatggcagtggaggagttcgtcgacagattggaggagctcatccaaggctattggttcggtggcaaaggtccttgtcagggttacggataaggcataccctctatcctacgacttatggaaaataccgataaggtataccttcacgtgtacggttggtttccgtatacgttgttaggaattcgcctcaaattacggaaaaatatctctacgagttaagaaattgccgaaatcctactcggttataagcgaggtggaggggatcgatggcaatggtgactgcaagcaatgtgaaggggctcgacgaaggtggcgacaaaaccagaggttcagatggtatctgagttataatatacttgttggtactaggcgaggcctatgtggtaccgtacttggcacttatggatattaggtgaCaccggttaggtaccaaatttgatacctatgagtatcaggtgataccaggaggtattaagatatgatatatacgtgagagtatactatttggataggattccgtgctatagcaaccccaattaaatgacaactgtgtttagagtataaaattgtactgatagattaatattgcaaatGgttttcacataatattttatatttgcttcatatatatgctctgtTcatctgaaaatataagagactttggatggatggatcactagggaatagctagtaagaatatatttttgtaaaaaatcccagtgaccctttaaaacaaaattatattaaagtcTtagataaaaaaaatccatgtgactctttaaaagaaaattaaattaaagtcttagataaaaaaaaagacacttacaagaataacggctttgactgttgacatggagagagtgccaccaccttccttctggattctcatgagagtattcagcaagcactcgttgtcgtcacgcgcgtcgtcgtcgccgccagccgcagtcgtcgccgccgcctcccggtgctgctcgatggcgcggtccaccagctcgaacagcttggcgttcaacgccctcacgtcgcgcaccgccgtgctcccgacggcgcggaggagcctcgacgacgggaacaggtcggcgacgccgaacctgctcgccttcctctgcgcctcgcccagcgtctccaggaactcctcccgccatcggaagccgcactcccccatgatggcgcgcagcgtcaggtcggtaagcgccccggcgatctgccagctcacgttcaccggcggcggctgatcgccgccgggagcggcggcggcggcggcgatggcgccaacgaggcgggcgacctgctcctcccggatggggcggaacgagcgcacccgcctcgcgttgaggagctcgaggctgcagatcccgcggaggcggcgccaccgctcgccgtacggcgagaagagtatccccaccgtgtcgccgatggagtccctcaccgtgacgctcatggcgcgggtggcgaacgcggcgtcgtgcgtcctcaggacctcccgggcggcgtcccgcgacgaggccaccacgacggggagctcgccgaggcggaggtacatgacgccgccgccgccgccgccgcaccgccgcgcgaggtcggccagcgcgcggtgcaccgccttcgggttcatggcgaggtggtgcaggctgccgatgacggggagccgccatggccccggcggcagcctcgtgccggcggcggcgttcttgcgacgacgacgtagcttcagctgtacgtggatcatcacggggacgatgagcagcagcagtagcggcgagtttaagctccatttccatgggcgatgaagcaatttacccatctccatatccat
More
|
||||||||||
| CDS seq | atggatatggagatgggtaaattgcttcatcgcccatggaaatggagcttaaactcgccgctactgctgctgctcatcgtccccgtgatgatccacgtacagctgaagctacgtcgtcgtcgcaagaacgccgccgccggcacgaggctgccgccggggccatggcggctccccgtcatcggcagcctgcaccacctcgccatgaacccgaaggcggtgcaccgcgcgctggccgacctcgcgcggcggtgcggcggcggcggcggcggcgtcatgtacctccgcctcggcgagctccccgtcgtggtggcctcgtcgcgggacgccgcccgggaggtcctgaggacgcacgacgccgcgttcgccacccgcgccatgagcgtcacggtgagggactccatcggcgacacggtggggatactcttctcgccgtacggcgagcggtggcgccgcctccgcgggatctgcagcctcgagctcctcaacgcgaggcgggtgcgctcgttccgccccatccgggaggagcaggtcgcccgcctcgttggcgccatcgccgccgccgccgccgctcccggcggcgatcagccgccgccggtgaacgtgagctggcagatcgccggggcgcttaccgacctgacgctgcgcgccatcatgggggagtgcggcttccgatggcgggaggagttcctggagacgctgggcgaggcgcagaggaaggcgagcaggttcggcgtcgccgacctgttcccgtcgtcgaggctcctccgcgccgtcgggagcacggcggtgcgcgacgtgagggcgttgaacgccaagctgttcgagctggtggaccgcgccatcgagcagcaccgggaggcggcggcgacgactgcggctggcggcgacgacgacgcgcgtgacgacaacgagtgcttgctgaatactctcatgagaatccagaaggaaggtggtggcactctctccatgtcaacagtcaaagccgttattcttgacatgtttgcaggtggaagcgaaacaacatcaacaatacttgaatgggccatgtcagagcttgtgaagaatcctcaagtgatgcagaaggcgcaagcacagatacgacttgctttgcaaggaagatctagaataacagaagatgacttgataaatttaagttacccaaagaatataatcaaggaaacactaagactgcatcctgtagcacccctacttatgccaaaagagtgtcaagagtcatgcaaaatattaggatataacattccaaaagggtcaatcatgttggtgaatgtatgggccatcggtagagaccacagatattgggatgatgcggaagtatttttgccagagcgttttgaggaaatcacagttgattttggaggcacaaactatgaattcataccatttgggggaggacggagaatatgtccaggcataacatttgcacatgccacactcgagttggccctcactgctctcctataccattttgattggcatcttcctcctagtgttacaccagatgggttggacatggaagaggaattcgggatgaacgttcgtagaaaaagggatcttcatctacatccagtaattcatgttggagtagaaaaaggtataatgagctag
More
|
||||||||||
| Protein seq | MDMEMGKLLHRPWKWSLNSPLLLLLIVPVMIHVQLKLRRRRKNAAAGTRLPPGPWRLPVIGSLHHLAMNPKAVHRALADLARRCGGGGGGVMYLRLGELPVVVASSRDAAREVLRTHDAAFATRAMSVTVRDSIGDTVGILFSPYGERWRRLRGICSLELLNARRVRSFRPIREEQVARLVGAIAAAAAAPGGDQPPPVNVSWQIAGALTDLTLRAIMGECGFRWREEFLETLGEAQRKASRFGVADLFPSSRLLRAVGSTAVRDVRALNAKLFELVDRAIEQHREAAATTAAGGDDDARDDNECLLNTLMRIQKEGGGTLSMSTVKAVILDMFAGGSETTSTILEWAMSELVKNPQVMQKAQAQIRLALQGRSRITEDDLINLSYPKNIIKETLRLHPVAPLLMPKECQESCKILGYNIPKGSIMLVNVWAIGRDHRYWDDAEVFLPERFEEITVDFGGTNYEFIPFGGGRRICPGITFAHATLELALTALLYHFDWHLPPSVTPDGLDMEEEFGMNVRRKRDLHLHPVIHVGVEKGIMS |
||||||||||
| Function | Ent-isokaurene C2/C3-hydroxylase [UniProtKB/Swiss-Prot:A3A871] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0025910 | OsLima_06g0025910.01 | Chr06 | 29321058 | 29324642 | - | NAM | ||
| CDS seq | atggatatggagatgggtaaattgcttcatcgcccatggaaatggagcttaaactcgccgctactgctgctgctcatcgtccccgtgatgatccacgtacagctgaagctacgtcgtcgtcgcaagaacgccgccgccggcacgaggctgccgccggggccatggcggctccccgtcatcggcagcctgcaccacctcgccatgaacccgaaggcggtgcaccgcgcgctggccgacctcgcgcggcggtgcggcggcggcggcggcggcgtcatgtacctccgcctcggcgagctccccgtcgtggtggcctcgtcgcgggacgccgcccgggaggtcctgaggacgcacgacgccgcgttcgccacccgcgccatgagcgtcacggtgagggactccatcggcgacacggtggggatactcttctcgccgtacggcgagcggtggcgccgcctccgcgggatctgcagcctcgagctcctcaacgcgaggcgggtgcgctcgttccgccccatccgggaggagcaggtcgcccgcctcgttggcgccatcgccgccgccgccgccgctcccggcggcgatcagccgccgccggtgaacgtgagctggcagatcgccggggcgcttaccgacctgacgctgcgcgccatcatgggggagtgcggcttccgatggcgggaggagttcctggagacgctgggcgaggcgcagaggaaggcgagcaggttcggcgtcgccgacctgttcccgtcgtcgaggctcctccgcgccgtcgggagcacggcggtgcgcgacgtgagggcgttgaacgccaagctgttcgagctggtggaccgcgccatcgagcagcaccgggaggcggcggcgacgactgcggctggcggcgacgacgacgcgcgtgacgacaacgagtgcttgctgaatactctcatgagaatccagaaggaaggtggtggcactctctccatgtcaacagtcaaagccgttattcttgacatgtttgcaggtggaagcgaaacaacatcaacaatacttgaatgggccatgtcagagcttgtgaagaatcctcaagtgatgcagaaggcgcaagcacagatacgacttgctttgcaaggaagatctagaataacagaagatgacttgataaatttaagttacccaaagaatataatcaaggaaacactaagactgcatcctgtagcacccctacttatgccaaaagagtgtcaagagtcatgcaaaatattaggatataacattccaaaagggtcaatcatgttggtgaatgtatgggccatcggtagagaccacagatattgggatgatgcggaagtatttttgccagagcgttttgaggaaatcacagttgattttggaggcacaaactatgaattcataccatttgggggaggacggagaatatgtccaggcataacatttgcacatgccacactcgagttggccctcactgctctcctataccattttgattggcatcttcctcctagtgttacaccagatgggttggacatggaagaggaattcgggatgaacgttcgtagaaaaagggatcttcatctacatccagtaattcatgttggagtagaaaaaggtataatgagctag
More
|
|||||||
| Protein seq | MDMEMGKLLHRPWKWSLNSPLLLLLIVPVMIHVQLKLRRRRKNAAAGTRLPPGPWRLPVIGSLHHLAMNPKAVHRALADLARRCGGGGGGVMYLRLGELPVVVASSRDAAREVLRTHDAAFATRAMSVTVRDSIGDTVGILFSPYGERWRRLRGICSLELLNARRVRSFRPIREEQVARLVGAIAAAAAAPGGDQPPPVNVSWQIAGALTDLTLRAIMGECGFRWREEFLETLGEAQRKASRFGVADLFPSSRLLRAVGSTAVRDVRALNAKLFELVDRAIEQHREAAATTAAGGDDDARDDNECLLNTLMRIQKEGGGTLSMSTVKAVILDMFAGGSETTSTILEWAMSELVKNPQVMQKAQAQIRLALQGRSRITEDDLINLSYPKNIIKETLRLHPVAPLLMPKECQESCKILGYNIPKGSIMLVNVWAIGRDHRYWDDAEVFLPERFEEITVDFGGTNYEFIPFGGGRRICPGITFAHATLELALTALLYHFDWHLPPSVTPDGLDMEEEFGMNVRRKRDLHLHPVIHVGVEKGIMS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0671300 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g45960 | RBH | 0.0 | 0.0 | 0.085416 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0671300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0025960 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0025770 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0025940 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0025550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0026030 | RBH | 0.0 | 3.980517 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0436600 | RBH | 0.0073375 | 0.0298495 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025500 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0419400 | RBH | 0.1224175 | 0.04184 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005890 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0025910 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0025580 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026180 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0025820 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G025660 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0025760 | RBH | 0.0 | 0.0 | 0.0 |
