Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0024070 | OGI:06074120 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:27700863-27702384 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagaacttagaattacagacaaaaaaggagttatcctcgttgagtttggagcggtcatatgcctatgctgattccagcgataaatacgcctcttctgagagagggatgcagaatagggctgtttttgaaaagctccagcctcatgatagccttgaaatactttgcataaagaactatgctggtgttgatttccctcgttggatgtctttactcccaaatcttgtgcaattgaagatagttggcatgcaatttgaatatctacaccttgatcagtttcagaacctcaaagagctgtttctctccagagtgcaatttgcgcatctccacctgaatggtctgcagaacctcatagaattgtctctctctggcctaaaatttggacatctccacatgatcagttacagaacctcagagagctgaaagtctccggtgtggaatttcaacatctccaccttgaacggttacagaacattacagagttgaaactctctgaagagcgatttgaacggctccatattgatcagttacagaacctcaaagagctgaaattctccagtgtggaatttggacatctccatcttgagcggttacagagcatcacaaagctggaactctgtaaaaacaatttgaacatctccaccttgttcagttagagaacctccgacagttgtatctcttcactgtgaaatttgagtgtgtcgttttgcatcagttacagaaccttgaggagctgcatctttcacagatagaaagccaaaagtctaacaaaccggtttgcattgagtgtagccaaccacttaggaagctccaaaagattgtcatgaccaaaataataaacaaagggttacaaatatccgtgcaaggaggagagggtgacaaaaatttattcccgggtcttcagcatttggaaatggaattatgtgagaatttaagattccaaccatccatcccgaggagcacccattacatcatatcaggggaaatatatttcgataaatttaattaccgtagaatattgggttcgttcctgttcccatcgttcaagcaagtcatggggacatcaatccctggatcaacatccaggatggaaatcaagaacaccagtggtctatcttccgaaagatggaagagcattccgcacctcgagcttctaaacatcacagaactaacaatagacaaatgtgttgatagttgtccagtgccaaagtgcatcctgggctggaagtccctccagaagcttgagatacggagatgcgaggatattgaattgcttccagaatggttgggagagatgtcctgtctcactgagctcatagtggagacctactggatggaagctttgcatccatgcatccggcggctcacaaatttgcagagcctgacacttataacatgcttgaataggtttaaagaaagatgcaagtcaggagatgactggatcaatatcaagcacattccgcatatacaaattacagatagaaatgggcgtacggagatcatttcaccaagttgtacctaa
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| CDS seq | atggagaacttagaattacagacaaaaaaggagttatcctcgttgagtttggagcggtcatatgcctatgctgattccagcgataaatacgcctcttctgagagagggatgcagaatagggctgtttttgaaaagctccagcctcatgatagccttgaaatactttgcataaagaactatgctggtgttgatttccctcgttggatgtctttactcccaaatcttgtgcaattgaagatagttggcatgcaatttgaatatctacaccttgatcagtttcagaacctcaaagagctgtttctctccagagtgcaatttgcgcatctccacctgaatgaacctcatagaattgtctctctctggcctaaaatttggacatctccacatgatcagttacagaacctcagagagctgaaagtctccggtgtggaatttcaacatctccaccttgaacggttacagaacattacagagttgaaactctctgaagagcgatttgaacggctccatattgatcagttacagaacctcaaagagctgaaattctccagtgtggaatttggacatctccatcttgagcggttacagagcatcacaaagctggaactctgtaaaaacaatttgaacatctccaccttgttcaagaacctccgacagttgtatctcttcactgtgaaatttgagtgtgtcgttttgcatcagttacagaaccttgaggagctgcatctttcacagatagaaagccaaaagtctaacaaaccggtttgcattgagtgtagccaaccacttaggaagctccaaaagattgtcatgaccaaaataataaacaaagggttacaaatatccgtgcaaggaggagagggtgacaaaaatttattcccgggtcttcagcatttggaaatggaattatgtgagaatttaagattccaaccatccatcccgaggagcacccattacatcatatcaggggaaatatatttcgataaatttaattaccgtagaatattgggttcgttcctgttcccatcgttcaagcaagtcatggggacatcaatccctggatcaacatccaggatggaaatcaagaacaccagtggtctatcttccgaaagatggaagagcattccgcacctcgagcttctaaacatcacagaactaacaatagacaaatgtgttgatagttgtccagtgccaaagtgcatcctgggctggaagtccctccagaagcttgagatacggagatgcgaggatattgaattgcttccagaatggttgggagagatgtcctgtctcactgagctcatagtggagacctactggatggaagctttgcatccatgcatccggcggctcacaaatttgcagagcctgacacttataacatgcttgaataggtttaaagaaagatgcaagtcaggagatgactggatcaatatcaagcacattccgcatatacaaattacagatagaaatgggcgtacggagatcatttcaccaagttgtacctaa
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| Protein seq | MENLELQTKKELSSLSLERSYAYADSSDKYASSERGMQNRAVFEKLQPHDSLEILCIKNYAGVDFPRWMSLLPNLVQLKIVGMQFEYLHLDQFQNLKELFLSRVQFAHLHLNEPHRIVSLWPKIWTSPHDQLQNLRELKVSGVEFQHLHLERLQNITELKLSEERFERLHIDQLQNLKELKFSSVEFGHLHLERLQSITKLELCKNNLNISTLFKNLRQLYLFTVKFECVVLHQLQNLEELHLSQIESQKSNKPVCIECSQPLRKLQKIVMTKIINKGLQISVQGGEGDKNLFPGLQHLEMELCENLRFQPSIPRSTHYIISGEIYFDKFNYRRILGSFLFPSFKQVMGTSIPGSTSRMEIKNTSGLSSERWKSIPHLELLNITELTIDKCVDSCPVPKCILGWKSLQKLEIRRCEDIELLPEWLGEMSCLTELIVETYWMEALHPCIRRLTNLQSLTLITCLNRFKERCKSGDDWINIKHIPHIQITDRNGRTEIISPSCT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0024070 | OsLima_06g0024070.01 | Chr06 | 27700863 | 27702384 | + | NAM | ||
| CDS seq | atggagaacttagaattacagacaaaaaaggagttatcctcgttgagtttggagcggtcatatgcctatgctgattccagcgataaatacgcctcttctgagagagggatgcagaatagggctgtttttgaaaagctccagcctcatgatagccttgaaatactttgcataaagaactatgctggtgttgatttccctcgttggatgtctttactcccaaatcttgtgcaattgaagatagttggcatgcaatttgaatatctacaccttgatcagtttcagaacctcaaagagctgtttctctccagagtgcaatttgcgcatctccacctgaatgaacctcatagaattgtctctctctggcctaaaatttggacatctccacatgatcagttacagaacctcagagagctgaaagtctccggtgtggaatttcaacatctccaccttgaacggttacagaacattacagagttgaaactctctgaagagcgatttgaacggctccatattgatcagttacagaacctcaaagagctgaaattctccagtgtggaatttggacatctccatcttgagcggttacagagcatcacaaagctggaactctgtaaaaacaatttgaacatctccaccttgttcaagaacctccgacagttgtatctcttcactgtgaaatttgagtgtgtcgttttgcatcagttacagaaccttgaggagctgcatctttcacagatagaaagccaaaagtctaacaaaccggtttgcattgagtgtagccaaccacttaggaagctccaaaagattgtcatgaccaaaataataaacaaagggttacaaatatccgtgcaaggaggagagggtgacaaaaatttattcccgggtcttcagcatttggaaatggaattatgtgagaatttaagattccaaccatccatcccgaggagcacccattacatcatatcaggggaaatatatttcgataaatttaattaccgtagaatattgggttcgttcctgttcccatcgttcaagcaagtcatggggacatcaatccctggatcaacatccaggatggaaatcaagaacaccagtggtctatcttccgaaagatggaagagcattccgcacctcgagcttctaaacatcacagaactaacaatagacaaatgtgttgatagttgtccagtgccaaagtgcatcctgggctggaagtccctccagaagcttgagatacggagatgcgaggatattgaattgcttccagaatggttgggagagatgtcctgtctcactgagctcatagtggagacctactggatggaagctttgcatccatgcatccggcggctcacaaatttgcagagcctgacacttataacatgcttgaataggtttaaagaaagatgcaagtcaggagatgactggatcaatatcaagcacattccgcatatacaaattacagatagaaatgggcgtacggagatcatttcaccaagttgtacctaa
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| Protein seq | MENLELQTKKELSSLSLERSYAYADSSDKYASSERGMQNRAVFEKLQPHDSLEILCIKNYAGVDFPRWMSLLPNLVQLKIVGMQFEYLHLDQFQNLKELFLSRVQFAHLHLNEPHRIVSLWPKIWTSPHDQLQNLRELKVSGVEFQHLHLERLQNITELKLSEERFERLHIDQLQNLKELKFSSVEFGHLHLERLQSITKLELCKNNLNISTLFKNLRQLYLFTVKFECVVLHQLQNLEELHLSQIESQKSNKPVCIECSQPLRKLQKIVMTKIINKGLQISVQGGEGDKNLFPGLQHLEMELCENLRFQPSIPRSTHYIISGEIYFDKFNYRRILGSFLFPSFKQVMGTSIPGSTSRMEIKNTSGLSSERWKSIPHLELLNITELTIDKCVDSCPVPKCILGWKSLQKLEIRRCEDIELLPEWLGEMSCLTELIVETYWMEALHPCIRRLTNLQSLTLITCLNRFKERCKSGDDWINIKHIPHIQITDRNGRTEIISPSCT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0644466 | RBH | 1.736013 | 1.839876 | 1.795068 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g43670 | RBH | 1.377627 | 1.335676 | 0.578545 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0644466 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0024100 | RBH | 0.777509 | 12.257148 | 4.209569 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0023900 | RBH | 0.455854 | 2.781730 | 1.417658 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0024090 | RBH | 1.143587 | 6.509969 | 4.625244 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0023650 | RBH | 0.206995 | 0.216971 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0024120 | RBH | 2.360933 | 19.236889 | 7.500743 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0023620 | RBH | 0.154638 | 0.314698 | 0.040435 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0393200 | SBH | 2.1603695 | 7.7610315 | 2.453125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0002790 | RBH | 0.000000 | 0.149656 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0024000 | RBH | 0.683424 | 6.883076 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0023670 | RBH | 5.038736 | 11.857508 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0024300 | RBH | 0.839325 | 1.590742 | 0.809333 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023910 | RBH | 0.319085 | 7.463801 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G023730 | RBH | 0.400173 | 1.473902 | 1.634831 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023920 | RBH | 1.397646 | 16.609947 | 4.249691 |
