Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0023650 | OGI:06073240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:27306473-27308449 | ||||||||
| Gene Symbol | MYB102, R2R3-MYB, OsMYB102 | ||||||||||
| DNA seq | tcagtgcatcctcccgacgcgctccgcggcggcgcgcatgacgccctccaccagctgcggcatgtggaggtcggcaccgccggcgtcgccgcacccggcgcggacgccgacgctcgccatgtacttgtgcacctcggcgcggatcatctcctgcatcgcggcggcgaactccgggtgaacgggtactgtgtcgtcgaggcggcggcggcggggggaggtggtggtggcggcgagggggaggacgggagttcttggaagtggctgtgggcgctgtcgtggttgaaccgctgatccgtcccagggagcgagagggagagcgaggtgaagggatcctcctcctgccgccggctgatggcgcagtcgacgggctcgaacgcgccggtcctcgccaccggccggaaaatctgcccgaacccgccgccgtggctgaggtcgctgcggtccgacccggaaccagaccccgacgggctgtccggcgtggggctgaaccgcttgcacggccgctcgacgagctcggcggcatcggcgaccactcccggcgcggcggcggcgcggtggtggtggtggtggtggtggtagcgacggcgagcttgcgcttgagggagcagttccagtggttcttcacggcgttgtcggtgcggccctggaggaggcgcgcgatggcggcccacctgttcccgagccgcgcgtgtgcgcggaggatggtggcgtcctcctcggcggtgaacggccgccgctccacctgcggcgagagctggttgcaccaccgcagccggcacgacttccccgacctcccggggatctcccgcccgatcgccgtccagttcctcgcgccgtgccgctccaccagccgccgcagcgcctcgtcctcctcggggctccacggccccctgatcctgtcgcaatccgcctcaactcctcctcctcctcccatggcgtcacgcgaagaagactactactaccacgacgagtcgacgacgacgacgacgacgagtagttgctactagtggaggagccaaaaggtgtttggtttcttgcggtttctgtctagttcgcgagtggtggtggtggtggtggcgatgggggttggagaaatagtgatgtggaggaggacggtatttatagcggcgcgtcgaccggtgactctgaccggcaatacagctggcacccgctgcacacgtcgcgtccccccggcaccgcctcctacccggggccgttgtcgttttcttcctcgtcattgacatgtgggccctgctacgaccgggacccacctgtcagcgatcgtgtagacccgagccccgtggttttaggtgggggcggtttctgcctcgctggattcgaaatttgaaccgtgacttctgttttcgtacgtgggaaagtgggaaacggcagttgccgttgagaaagatcagtgatgagaggggggcgccgaaacggccaacggatttatgagcacttgtcacccttttcccgcggaagtgaatcggtcccaattccggtaatttgggtaaacctaacggtgtcagttcaaaattcgaatcgaccatttttacgtgagtttagttttttttcagctgagagaaaaaaaaaagcccggacaggattgattcacacgtctatcaggttcgttgctaacttgtcgtcttgtacaaccgagcgacctcgataccacgacAaaaaaaaaaagaagagggagagagaggaagtggagtggactcgaaaccaccgtgaggaaagcaacggcagtggagtggagtagtactcgtactcgtgctcgtgcgtaacaaaccgacacgaggtgtgaggtggcgtgttgtgcggacgagtacgaccaccgatgcgctgtgcttatcccgtcccacgaacgaaccgatcagacgacgagaccggcacgatccactcccccatcgtcgtcgtcgtcgtggcggctcccgcgcgcgcggtgcactgaactgcacctcccctgcccatccccat
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| CDS seq | atggggatgggcaggggaggtgcagttcagtgcaccgcgcgcgcgggagccgccacgacgacgacgacgatgggggagtggatcgtgccggtctcgtcgtctgatcggatcagggggccgtggagccccgaggaggacgaggcgctgcggcggctggtggagcggcacggcgcgaggaactggacggcgatcgggcgggagatccccgggaggtcggggaagtcgtgccggctgcggtggtgcaaccagctctcgccgcaggtggagcggcggccgttcaccgccgaggaggacgccaccatcctccgcgcacacgcgcggctcgggaacaggtgggccgccatcgcgcgcctcctccagggccgcaccgacaacgccgtgaagaaccactggaactgctccctcaagcgcaagctcgccgtcgctaccaccaccaccaccaccaccaccgcgccgccgccgcgccgggagtggtcgccgatgccgccgagctcgtcgagcggccgtgcaagcggttcagccccacgccggacagcccgtcggggtctgccacttccaagaactcccgtcctccccctcgccgccaccaccacctccccccgccgccgccgcctcgacgacacagtacccgttcacccggagttcgccgccgcgatgcaggagatgatccgcgccgaggtgcacaagtacatggcgagcgtcggcgtccgcgccgggtgcggcgacgccggcggtgccgacctccacatgccgcagctggtggagggcgtcatgcgcgccgccgcggagcgcgtcgggaggatgcactga
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| Protein seq | MGMGRGGAVQCTARAGAATTTTTMGEWIVPVSSSDRIRGPWSPEEDEALRRLVERHGARNWTAIGREIPGRSGKSCRLRWCNQLSPQVERRPFTAEEDATILRAHARLGNRWAAIARLLQGRTDNAVKNHWNCSLKRKLAVATTTTTTTTAPPPRREWSPMPPSSSSGRASGSAPRRTARRGLPLPRTPVLPLAATTTSPRRRRLDDTVPVHPEFAAAMQEMIRAEVHKYMASVGVRAGCGDAGGADLHMPQLVEGVMRAAAERVGRMH |
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| Function | Transcription factor MYB44 [UniProtKB/Swiss-Prot:Q9FDW1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0023650 | OsLima_06g0023650.01 | Chr06 | 27306473 | 27308449 | - | NAM | ||
| CDS seq | atggggatgggcaggggaggtgcagttcagtgcaccgcgcgcgcgggagccgccacgacgacgacgacgatgggggagtggatcgtgccggtctcgtcgtctgatcggatcagggggccgtggagccccgaggaggacgaggcgctgcggcggctggtggagcggcacggcgcgaggaactggacggcgatcgggcgggagatccccgggaggtcggggaagtcgtgccggctgcggtggtgcaaccagctctcgccgcaggtggagcggcggccgttcaccgccgaggaggacgccaccatcctccgcgcacacgcgcggctcgggaacaggtgggccgccatcgcgcgcctcctccagggccgcaccgacaacgccgtgaagaaccactggaactgctccctcaagcgcaagctcgccgtcgctaccaccaccaccaccaccaccaccgcgccgccgccgcgccgggagtggtcgccgatgccgccgagctcgtcgagcggccgtgcaagcggttcagccccacgccggacagcccgtcggggtctgccacttccaagaactcccgtcctccccctcgccgccaccaccacctccccccgccgccgccgcctcgacgacacagtacccgttcacccggagttcgccgccgcgatgcaggagatgatccgcgccgaggtgcacaagtacatggcgagcgtcggcgtccgcgccgggtgcggcgacgccggcggtgccgacctccacatgccgcagctggtggagggcgtcatgcgcgccgccgcggagcgcgtcgggaggatgcactga
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| Protein seq | MGMGRGGAVQCTARAGAATTTTTMGEWIVPVSSSDRIRGPWSPEEDEALRRLVERHGARNWTAIGREIPGRSGKSCRLRWCNQLSPQVERRPFTAEEDATILRAHARLGNRWAAIARLLQGRTDNAVKNHWNCSLKRKLAVATTTTTTTTAPPPRREWSPMPPSSSSGRASGSAPRRTARRGLPLPRTPVLPLAATTTSPRRRRLDDTVPVHPEFAAAMQEMIRAEVHKYMASVGVRAGCGDAGGADLHMPQLVEGVMRAAAERVGRMH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0637500 | RBH | 1.048941 | 0.183023 | 6.818819 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g43090 | RBH | 0.705224 | 0.122383 | 1.745092 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0637500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0023730 | RBH | 0.138567 | 3.244976 | 6.843844 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0023540 | RBH | 0.378117 | 6.390679 | 0.597147 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0023660 | RBH | 0.0 | 7.122053 | 3.595403 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0023270 | RBH | 0.051902 | 0.522274 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0023720 | RBH | 0.729561 | 27.461365 | 1.232076 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0406500 | RBH | 12.435925 | 222.325241 | 149.8298035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0023200 | RBH | 0.070237 | 1.710563 | 1.376766 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0387900 | RBH | 25.9569265 | 154.1974185 | 12.887942 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0004990 | RBH | 0.048054 | 0.280290 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0023580 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0023270 | RBH | 0.0 | 41.242676 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0023930 | SBH | 1.027329 | 2.732879 | 0.864150 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023530 | RBH | 0.0 | 15.410751 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G023320 | SBH | 0.175269 | 9.301058 | 2.759188 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023530 | RBH | 0.602080 | 25.474049 | 6.725624 |
