Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0023080 | OGI:06071840 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:26733545-26736004 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgattattgttctagtgtatgttgatgggagaatacaatatggagctaagggtgcagaatataatattcctccaaaaataacttttccggcagtggaggctacaacctttgaggaagtcAaaaaagaaatttttcaggcccttggatacactgaggatcattgtgcaatgaatatccaagctcggtttgatatcagaaatcctggaccacaatattttcaattgattcctatttatgaagacaggggatggaggatgatatttgagaagacatgtgggcaagttgttgagctttatgttgaatgcgcctatacggaagcaagattaagtcgattaagtcaggttaatagtacaaccttggttgcatcaactaggcattcaaaaatggatggctcaggtgtttctttggagccaggtacagttcattcacaagcaaaggttgtacccactttagcagatggtctgcattcaacaacagtttagttgtcttcacctatcaaccaggataatgtggtttccgaaacacaaccaactatagatgatgataatactgcagaagacacatatgttggtgaggatagatttggactggacgatgacaaggagcaggattgtgatggtgcccttgataatagttcagatgatgagcccccagaaccacgagttgttcattctgtcaatgcatttccttttatgcgtgcatatggataaaatcctataaaagcatttagtgatatatctgtgttgagggagacaacagcagacgagagtttctttggacgtaagaatcaattttctaacccactagcagaaggaaagtcttttgattcaaaagagcacctacaaattgctataggtgagtttcatatatgtaaaaattcagaaatcaagtacagcacaagtagtcagtctaaacttgtagctgaatgcacggataatagctgcatgtggaggctctatgcaaCTcccacaaagataggttcaggttggatgataaggaaatgtccctatgctcacacctgtcgagcaccagctgatagatttgatcatgctcagttatcatcttctatgattgctaatgtgatacgtgatgcattaagggatgatctggaattgagtataaaaaatgtgaggtcactagtccaacagagatatagaaatgtgaagccatcttatagtaaattatggcgaggcagagagaaggcaatagcacaactttttggtagttgggaaggttcatatggcctcctcatccctttcttacaggctataaaagctaaaaacccaagtacaaagtatgtccttttgtcaaagccaacgacttaggaaggacggcgagcatttaaaagtgttgcttgggcatttggaccttgtatcaatgcaattccctacctacggccagttataagtgttgatgcatgctttttgtcagggaggtacaagggtagattgttgattgcttgtggatatgatgctaacaatcaattactacctcttgcatttgctattgtggagaaggaagatagtgcaaactgggggtggtttatgagatggctacgaagtgaggtaataggctatggaaagtttatgtgtgttatatctgatcgacataaagccataaaatggttgtttaagcagccccacattggatggaatgagagcgccggtgaatgtgtgcactgcctttgctcacagcatgtagctgagaatctatagaaattttgttgcaatgaaatagtgctcaagacatttaagtggacagtgaagaaaaagaaacctagaaaatttgatgaaggaatgtcatcaattgcaaatatttgtcctgaggcaataacatatattaaaaaggttggaaagtacttgcaggaagataaagatgagcaagaaaagcccgagaaggtatttcaatgcaaggatggaggatatcgttggggaatcatgacaagcaatggatctgagtcattgaacaatgtgtttaagttttctcggaggttaccggtggcagccattgtggaggaaacattttcaaagtgcttagaatggtttgttgagagaaggagaaatgctgttaatttacttaacaatggcaagcaatggtctcaaagggttgataagctattagtgaagcaaggaaataaggctggacatataaatgtaatctcgtatggagatgaagttggaatatatgagataaaggtcgacaatgagttagtcccaatgcaacaaggaaaccatgaggtttacacacggagggacttcaagtataaggtagttttgcagcccaacaacacaccatcttgtgactatcaaaagccaaatttgacaggtgttccatgtgctcatgtcttggcagtttgcaaacatagaaatcttaatgaaaatcagttgatcaatccattctactcttctcaagcacttgctagtacctgggctggacaatttcttccttatggaaattaa
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| CDS seq | atgattattgttctagtgtatgttgatgggagaatacaatatggagctaagggtgcagaatataatattcctccaaaaataacttttccggcagtggaggctacaacctttgaggaagtcAaaaaagaaatttttcaggcccttggatacactgaggatcattgtgcaatgaatatccaagctcggtttgatatcagaaatcctggaccacaatattttcaattgattcctatttatgaagacaggggatggaggatgatatttgagaagacatgtgggcaagttgttgagctttatgttgaatgcgcctatacggaagcaagattaagtcgattaagtcaggttaatagtacaaccttggttgcatcaactaggcattcaaaaatggatggctcaggtgtttctttggagccagaaatcaagtacagcacaagtagtcagtctaaacttgtagctgaatgcacggataatagctgcatgtggaggctctatgcaaCTcccacaaagataggttcaggttggatgataaggaaatgtccctatgctcacacctgtcgagcaccagctgatagatttgatcatgctcagttatcatcttctatgattgctaatgtgatacgtgatgcattaagggatgatctggaattgagtataaaaaatgtgaggtcactagtccaacagagatatagaaatgtgaagccatcttatagtaaattatggcgaggcagagagaaggcaatagcacaactttttggtagttgggaaggttcatatggcctcctcatccctttcttacaggctataaaagctaaaaacccaatgctcaagacatttaagtggacagtgaagaaaaagaaacctagaaaatttgatgaaggaatgtcatcaattgcaaatatttgtcctgaggcaataacatatattaaaaaggctggacatataaatgtaatctcgtatggagatgaagttggaatatatgagataaaggtcgacaatgagttagtcccaatgcaacaaggaaaccatgaggtttacacacggagggacttcaagtataaggtagttttgcagcccaacaacacaccatcttgtgactatcaaaagccaaatttgacaggtgttccatgtgctcatgtcttggcagtttgcaaacatagaaatcttaatgaaaatcagttgatcaatccattctactcttctcaagcacttgctagtacctgggctggacaatttcttccttatggaaattaa
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| Protein seq | MIIVLVYVDGRIQYGAKGAEYNIPPKITFPAVEATTFEEVKKEIFQALGYTEDHCAMNIQARFDIRNPGPQYFQLIPIYEDRGWRMIFEKTCGQVVELYVECAYTEARLSRLSQVNSTTLVASTRHSKMDGSGVSLEPEIKYSTSSQSKLVAECTDNSCMWRLYATPTKIGSGWMIRKCPYAHTCRAPADRFDHAQLSSSMIANVIRDALRDDLELSIKNVRSLVQQRYRNVKPSYSKLWRGREKAIAQLFGSWEGSYGLLIPFLQAIKAKNPMLKTFKWTVKKKKPRKFDEGMSSIANICPEAITYIKKAGHINVISYGDEVGIYEIKVDNELVPMQQGNHEVYTRRDFKYKVVLQPNNTPSCDYQKPNLTGVPCAHVLAVCKHRNLNENQLINPFYSSQALASTWAGQFLPYGN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0023080 | OsLima_06g0023080.01 | Chr06 | 26733545 | 26736004 | + | NAM | ||
| CDS seq | atgattattgttctagtgtatgttgatgggagaatacaatatggagctaagggtgcagaatataatattcctccaaaaataacttttccggcagtggaggctacaacctttgaggaagtcAaaaaagaaatttttcaggcccttggatacactgaggatcattgtgcaatgaatatccaagctcggtttgatatcagaaatcctggaccacaatattttcaattgattcctatttatgaagacaggggatggaggatgatatttgagaagacatgtgggcaagttgttgagctttatgttgaatgcgcctatacggaagcaagattaagtcgattaagtcaggttaatagtacaaccttggttgcatcaactaggcattcaaaaatggatggctcaggtgtttctttggagccagaaatcaagtacagcacaagtagtcagtctaaacttgtagctgaatgcacggataatagctgcatgtggaggctctatgcaaCTcccacaaagataggttcaggttggatgataaggaaatgtccctatgctcacacctgtcgagcaccagctgatagatttgatcatgctcagttatcatcttctatgattgctaatgtgatacgtgatgcattaagggatgatctggaattgagtataaaaaatgtgaggtcactagtccaacagagatatagaaatgtgaagccatcttatagtaaattatggcgaggcagagagaaggcaatagcacaactttttggtagttgggaaggttcatatggcctcctcatccctttcttacaggctataaaagctaaaaacccaatgctcaagacatttaagtggacagtgaagaaaaagaaacctagaaaatttgatgaaggaatgtcatcaattgcaaatatttgtcctgaggcaataacatatattaaaaaggctggacatataaatgtaatctcgtatggagatgaagttggaatatatgagataaaggtcgacaatgagttagtcccaatgcaacaaggaaaccatgaggtttacacacggagggacttcaagtataaggtagttttgcagcccaacaacacaccatcttgtgactatcaaaagccaaatttgacaggtgttccatgtgctcatgtcttggcagtttgcaaacatagaaatcttaatgaaaatcagttgatcaatccattctactcttctcaagcacttgctagtacctgggctggacaatttcttccttatggaaattaa
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| Protein seq | MIIVLVYVDGRIQYGAKGAEYNIPPKITFPAVEATTFEEVKKEIFQALGYTEDHCAMNIQARFDIRNPGPQYFQLIPIYEDRGWRMIFEKTCGQVVELYVECAYTEARLSRLSQVNSTTLVASTRHSKMDGSGVSLEPEIKYSTSSQSKLVAECTDNSCMWRLYATPTKIGSGWMIRKCPYAHTCRAPADRFDHAQLSSSMIANVIRDALRDDLELSIKNVRSLVQQRYRNVKPSYSKLWRGREKAIAQLFGSWEGSYGLLIPFLQAIKAKNPMLKTFKWTVKKKKPRKFDEGMSSIANICPEAITYIKKAGHINVISYGDEVGIYEIKVDNELVPMQQGNHEVYTRRDFKYKVVLQPNNTPSCDYQKPNLTGVPCAHVLAVCKHRNLNENQLINPFYSSQALASTWAGQFLPYGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0632700 | RBH | 1.832181 | 2.083357 | 2.992766 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g42230 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0632700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0023130 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0022950 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0023050 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0022720 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0023140 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0399000 | RBH | 0 | 0 | 0.0085215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0022610 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0378900 | RBH | 0 | 0 | 0.0057695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0023020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0022650 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0023410 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0022960 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G022680 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0022940 | RBH | 0.0 | 0.0 | 0.0 |
