Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0022920 | OGI:06071210 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:26579340-26581343 | ||||||||
| Gene Symbol | OsLysM-RLK5, OsLYK2 | ||||||||||
| DNA seq | atgtcgatgctgccgcgcttcctcctcctcgtcgtgctgctcgcggtgccgatgacggcggcgcagcagcagtacgaggccaacgcgcagggcgactgctacaccgacaacggcagctccgtcctcggctacacctgcggcaccgccgcctccccgccgccgccgccatgcacggcctacctcaccttccgctccgccccaccgagctacgcctccccgatcaccgtctcctacctcctcaacgccagcgtccccgccgtcgccgccgccaactccgtcccggtctcgcctccggtcgcccgcgacggcctcctcctcgtccccgtcccctgcgcctgcaccgccgccgggtactaccagcacgacgccggctacgtcatccagttcgacgacgagacctacttcgtcatggcgaacgacacgtaccaggggctcacgacgtgccaggcgctcatggcgcagaacccggcgcacgacagcctcgacctctacccgggaatcagactcaccgtgccgctgcgctgcgcgtgcccgtcgccggcgcaggccgccgccggcgtgaggtacctagtgacgtacctcctcggctgggacgacgactcgtccaccgtcgccgaccgcttcggcgccgactaccaggccgttctcttcgccaacaacctcaccgacgactccacggtgtatcccttcaccacgatgcttgtcccgctcaagcatcggcccaagcccgacgtgacggtcttgccggagccggggcctccttctccggctccggctccggcagtgtcagctccgccgccgccggcggtgccttccagcgaatcgggcagtgggaggtggaagaaatcctttcgcggtaggtgtatcggcattggagttggtgttgggttcgccgttcttgcgtctggtgctctgcttgctctgttcttgctacggcgtcggtggcggtggcgtggcaacggcgagcttcacgatgtgccgttggctccggataaggagggagcgaaggcgacgccgccgccgtggatgctgccgacgacggtggcggacgtcgacgtgcgcgatgccgtgggatcgatggccgtgtacgagtacggcgagctggagcgggcgacggccgggttcgcggaggagcggcgcatcggggactcgtcggtctaccgcgcggtgatcaacggcgacgtcgcggcggcggtgaagcgcgtcgccggcgacgtgggcgccgaggtgagcgtcctgggacgcgtcagccactcgtgcctcgtccgcctgttcggcctctgcgtgcaccgcggcgacacgtacctggtgttcgagctcgccgagaacggcgcgctcagcgactggatccgcggcgacaacggcggccgcgccctctcgtggaggcagcggatgcaggcggcgctcgacgtggccgacgggctcaactacctccacaactacaccaggccgccctacgtgcacaagaacctcaagagcagcaacgtcctcctcgacgccgacttccgcgccaaggtctccaacttcggcctggcgcgcaccgtcgccggcgccggcgggcagatgacgtcgcgcgtcgtgggtacgcaggggtacatggcgccggagtacctggagcacgggctgatcgggcctcacctcgacgtgttcgccttcggtgtcgtcctgctcgagctcctgtccgggaaggaggcagcgcctgcgcgagacggcggcgagggtggcgatggcgaagcattggcgttgctgctgtgggaggaagcggaggggcagctggtggtcgacggcgacgatgacgacgcgcggggcaaggtggcggcgttcatggactcccggttgcgtggcgactacccgtcggaggtggctctcgcgatggctgcgctggcgctgcggtgcgtcgcgcgggagccccgcgcgcggccgtcgatggtggaggtgttcctctcgctctcggcgttgcacggcacaacgttggattgggccccccatgcaaccctgagttga
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| CDS seq | atgtcgatgctgccgcgcttcctcctcctcgtcgtgctgctcgcggtgccgatgacggcggcgcagcagcagtacgaggccaacgcgcagggcgactgctacaccgacaacggcagctccgtcctcggctacacctgcggcaccgccgcctccccgccgccgccgccatgcacggcctacctcaccttccgctccgccccaccgagctacgcctccccgatcaccgtctcctacctcctcaacgccagcgtccccgccgtcgccgccgccaactccgtcccggtctcgcctccggtcgcccgcgacggcctcctcctcgtccccgtcccctgcgcctgcaccgccgccgggtactaccagcacgacgccggctacgtcatccagttcgacgacgagacctacttcgtcatggcgaacgacacgtaccaggggctcacgacgtgccaggcgctcatggcgcagaacccggcgcacgacagcctcgacctctacccgggaatcagactcaccgtgccgctgcgctgcgcgtgcccgtcgccggcgcaggccgccgccggcgtgaggtacctagtgacgtacctcctcggctgggacgacgactcgtccaccgtcgccgaccgcttcggcgccgactaccaggccgttctcttcgccaacaacctcaccgacgactccacggtgtatcccttcaccacgatgcttgtcccgctcaagcatcggcccaagcccgacgtgacggtcttgccggagccggggcctccttctccggctccggctccggcagtgtcagctccgccgccgccggcggtgccttccagcgaatcgggcagtgggaggtggaagaaatcctttcgcggtaggtgtatcggcattggagttggtgttgggttcgccgttcttgcgtctggtgctctgcttgctctgttcttgctacggcgtcggtggcggtggcgtggcaacggcgagcttcacgatgtgccgttggctccggataaggagggagcgaaggcgacgccgccgccgtggatgctgccgacgacggtggcggacgtcgacgtgcgcgatgccgtgggatcgatggccgtgtacgagtacggcgagctggagcgggcgacggccgggttcgcggaggagcggcgcatcggggactcgtcggtctaccgcgcggtgatcaacggcgacgtcgcggcggcggtgaagcgcgtcgccggcgacgtgggcgccgaggtgagcgtcctgggacgcgtcagccactcgtgcctcgtccgcctgttcggcctctgcgtgcaccgcggcgacacgtacctggtgttcgagctcgccgagaacggcgcgctcagcgactggatccgcggcgacaacggcggccgcgccctctcgtggaggcagcggatgcaggcggcgctcgacgtggccgacgggctcaactacctccacaactacaccaggccgccctacgtgcacaagaacctcaagagcagcaacgtcctcctcgacgccgacttccgcgccaaggtctccaacttcggcctggcgcgcaccgtcgccggcgccggcgggcagatgacgtcgcgcgtcgtgggtacgcaggggtacatggcgccggagtacctggagcacgggctgatcgggcctcacctcgacgtgttcgccttcggtgtcgtcctgctcgagctcctgtccgggaaggaggcagcgcctgcgcgagacggcggcgagggtggcgatggcgaagcattggcgttgctgctgtgggaggaagcggaggggcagctggtggtcgacggcgacgatgacgacgcgcggggcaaggtggcggcgttcatggactcccggttgcgtggcgactacccgtcggaggtggctctcgcgatggctgcgctggcgctgcggtgcgtcgcgcgggagccccgcgcgcggccgtcgatggtggaggtgttcctctcgctctcggcgttgcacggcacaacgttggattgggccccccatgcaaccctgagttga
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| Protein seq | MSMLPRFLLLVVLLAVPMTAAQQQYEANAQGDCYTDNGSSVLGYTCGTAASPPPPPCTAYLTFRSAPPSYASPITVSYLLNASVPAVAAANSVPVSPPVARDGLLLVPVPCACTAAGYYQHDAGYVIQFDDETYFVMANDTYQGLTTCQALMAQNPAHDSLDLYPGIRLTVPLRCACPSPAQAAAGVRYLVTYLLGWDDDSSTVADRFGADYQAVLFANNLTDDSTVYPFTTMLVPLKHRPKPDVTVLPEPGPPSPAPAPAVSAPPPPAVPSSESGSGRWKKSFRGRCIGIGVGVGFAVLASGALLALFLLRRRWRWRGNGELHDVPLAPDKEGAKATPPPWMLPTTVADVDVRDAVGSMAVYEYGELERATAGFAEERRIGDSSVYRAVINGDVAAAVKRVAGDVGAEVSVLGRVSHSCLVRLFGLCVHRGDTYLVFELAENGALSDWIRGDNGGRALSWRQRMQAALDVADGLNYLHNYTRPPYVHKNLKSSNVLLDADFRAKVSNFGLARTVAGAGGQMTSRVVGTQGYMAPEYLEHGLIGPHLDVFAFGVVLLELLSGKEAAPARDGGEGGDGEALALLLWEEAEGQLVVDGDDDDARGKVAAFMDSRLRGDYPSEVALAMAALALRCVAREPRARPSMVEVFLSLSALHGTTLDWAPHATLS |
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| Function | Protein LYK5 [UniProtKB/Swiss-Prot:O22808] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0022920 | OsLima_06g0022920.01 | Chr06 | 26579340 | 26581343 | + | NAM | ||
| CDS seq | atgtcgatgctgccgcgcttcctcctcctcgtcgtgctgctcgcggtgccgatgacggcggcgcagcagcagtacgaggccaacgcgcagggcgactgctacaccgacaacggcagctccgtcctcggctacacctgcggcaccgccgcctccccgccgccgccgccatgcacggcctacctcaccttccgctccgccccaccgagctacgcctccccgatcaccgtctcctacctcctcaacgccagcgtccccgccgtcgccgccgccaactccgtcccggtctcgcctccggtcgcccgcgacggcctcctcctcgtccccgtcccctgcgcctgcaccgccgccgggtactaccagcacgacgccggctacgtcatccagttcgacgacgagacctacttcgtcatggcgaacgacacgtaccaggggctcacgacgtgccaggcgctcatggcgcagaacccggcgcacgacagcctcgacctctacccgggaatcagactcaccgtgccgctgcgctgcgcgtgcccgtcgccggcgcaggccgccgccggcgtgaggtacctagtgacgtacctcctcggctgggacgacgactcgtccaccgtcgccgaccgcttcggcgccgactaccaggccgttctcttcgccaacaacctcaccgacgactccacggtgtatcccttcaccacgatgcttgtcccgctcaagcatcggcccaagcccgacgtgacggtcttgccggagccggggcctccttctccggctccggctccggcagtgtcagctccgccgccgccggcggtgccttccagcgaatcgggcagtgggaggtggaagaaatcctttcgcggtaggtgtatcggcattggagttggtgttgggttcgccgttcttgcgtctggtgctctgcttgctctgttcttgctacggcgtcggtggcggtggcgtggcaacggcgagcttcacgatgtgccgttggctccggataaggagggagcgaaggcgacgccgccgccgtggatgctgccgacgacggtggcggacgtcgacgtgcgcgatgccgtgggatcgatggccgtgtacgagtacggcgagctggagcgggcgacggccgggttcgcggaggagcggcgcatcggggactcgtcggtctaccgcgcggtgatcaacggcgacgtcgcggcggcggtgaagcgcgtcgccggcgacgtgggcgccgaggtgagcgtcctgggacgcgtcagccactcgtgcctcgtccgcctgttcggcctctgcgtgcaccgcggcgacacgtacctggtgttcgagctcgccgagaacggcgcgctcagcgactggatccgcggcgacaacggcggccgcgccctctcgtggaggcagcggatgcaggcggcgctcgacgtggccgacgggctcaactacctccacaactacaccaggccgccctacgtgcacaagaacctcaagagcagcaacgtcctcctcgacgccgacttccgcgccaaggtctccaacttcggcctggcgcgcaccgtcgccggcgccggcgggcagatgacgtcgcgcgtcgtgggtacgcaggggtacatggcgccggagtacctggagcacgggctgatcgggcctcacctcgacgtgttcgccttcggtgtcgtcctgctcgagctcctgtccgggaaggaggcagcgcctgcgcgagacggcggcgagggtggcgatggcgaagcattggcgttgctgctgtgggaggaagcggaggggcagctggtggtcgacggcgacgatgacgacgcgcggggcaaggtggcggcgttcatggactcccggttgcgtggcgactacccgtcggaggtggctctcgcgatggctgcgctggcgctgcggtgcgtcgcgcgggagccccgcgcgcggccgtcgatggtggaggtgttcctctcgctctcggcgttgcacggcacaacgttggattgggccccccatgcaaccctgagttga
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| Protein seq | MSMLPRFLLLVVLLAVPMTAAQQQYEANAQGDCYTDNGSSVLGYTCGTAASPPPPPCTAYLTFRSAPPSYASPITVSYLLNASVPAVAAANSVPVSPPVARDGLLLVPVPCACTAAGYYQHDAGYVIQFDDETYFVMANDTYQGLTTCQALMAQNPAHDSLDLYPGIRLTVPLRCACPSPAQAAAGVRYLVTYLLGWDDDSSTVADRFGADYQAVLFANNLTDDSTVYPFTTMLVPLKHRPKPDVTVLPEPGPPSPAPAPAVSAPPPPAVPSSESGSGRWKKSFRGRCIGIGVGVGFAVLASGALLALFLLRRRWRWRGNGELHDVPLAPDKEGAKATPPPWMLPTTVADVDVRDAVGSMAVYEYGELERATAGFAEERRIGDSSVYRAVINGDVAAAVKRVAGDVGAEVSVLGRVSHSCLVRLFGLCVHRGDTYLVFELAENGALSDWIRGDNGGRALSWRQRMQAALDVADGLNYLHNYTRPPYVHKNLKSSNVLLDADFRAKVSNFGLARTVAGAGGQMTSRVVGTQGYMAPEYLEHGLIGPHLDVFAFGVVLLELLSGKEAAPARDGGEGGDGEALALLLWEEAEGQLVVDGDDDDARGKVAAFMDSRLRGDYPSEVALAMAALALRCVAREPRARPSMVEVFLSLSALHGTTLDWAPHATLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0625200 | SBH | 0.0 | 0.0 | 0.307744 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g41980 | RBH | 0.100937 | 0.075684 | 0.076650 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0625200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0022960 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0022790 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0022890 | RBH | 0.000000 | 0.000000 | 0.330389 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0022550 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0022990 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0396000 | RBH | 0.347932 | 1.5274735 | 0.1983225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0022440 | RBH | 0.030375 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0375900 | RBH | 0.387588 | 1.1113965 | 0.149721 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0007320 | RBH | 0.034765 | 0.049133 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0022830 | RBH | 0.091019 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0022480 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0023220 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0022810 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G022510 | RBH | 0.000000 | 0.443827 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0022770 | RBH | 0.230868 | 0.0 | 0.0 |
