Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0022320 | OGI:06069500 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:25889042-25895339 | ||||||||
| Gene Symbol | OsbHLH095, bHLH095 | ||||||||||
| DNA seq | tcgtttaacttgttcaccaaataaatgctgctcatataaccttgacattaaaccatcgtagtcaggcatacaccaagaatacatcagcaagaaaagaacccacagtatctctcgctcatctctacaaaaaaagatagcagcagtaaaacctccatatccatcacctccagctccaagagtctccaacaacagcaacaacagtatctctctatatcttgcattccatatgtacatcgtctcagaatccggcctccaaaatcaatgaaagtcccatgcaccgcactgctgcactgcacaagacgttgccaaccatccacagcagcagcagcagccgtcagtccacagctcacgcctagctagctagctagctctcctgacatccagccgccattgtccacagctcacgtatgtttgtttggcttgctctgctgacctgcttgctatcactaccaccaccgttggtcacaggctcacagctccgtctttagcttgttgcctgtctgggccggcgctcctgcacaaacacatggggAaaaaaaaagtagaagaggtcaaagttagtggtagggttcctggggtacaatgatttcaagaggggaggacaatagtagctaggacagcatcaagtgaccagctggtaacaggtaaaaagggggttcagttcagatcagtcaaattccaagaatttgccaaaaccagtcttgcataagttaattgagtactcctatagtcctattcagtagtttcttgaaattatatacgaaagccaaaaaagaaaggtccaaaaatgcatgcataggataacattgtcagtagcaaggggaattcagcaagaccgtctattttcgaggaatgcaaagcgaatgagctgaaccacagagattagaacgacaccaagttgggtccatttcaatgtgaagccatgaggttgagatctgccctgctaagacagagctgcaaggggatgggccgcgtgataaagatgatggctggggaggactggacaaagcttgctgtataccactcagctttgagcgcagacaccggtacacgaagaagctgcaataatttctggcaaaaacagattctgccagccgtaatgcagtacagatatcatgtagtcagggcctcaggggagggccctaaaggtttaatgatccttgaacgctttgcatgattgggtctgtacctccaatagcatttgtccctccaagagctctgcttggatccagagctgcagatcagttaaccagatccaaacggcagatcacctctactacacaccttttcttccatcttactcattagcaaatgcaagagtataacttcatgatagtgctaaaacatgattcttagacaatggagctggctcatttggctctcacaatatctgtactagttatccaatccactctcttagccaagctatataatcgacctcttaaactgaaccatgtgctacggtgtattccttgataaatatataggatccactacaaacttcagtacccagctacccagtgataaaactacatctctagttacaaggacagtcaaatggcacgcaaaatgtatgtcatgcaatgcaaacgtaaatctagcccacatgaattgccataatcgaatgaaattatcgtcgttagatatgtcaaattaagatccaaacccttagattcgcttatgtatttgctattcaactagttgaatagaaaacaatactacagtacagcgtacaaatagtagcactgagattaaagttgttttagctagctccctccattgcaagaaaggggatccctagacaggcactggacaacttacagaaaaagtggacccttcacagttgtacaagtgatcagaagggccaaagggaccagatctgcatctacaggccttatgcagccaagcccaaacggaaagccgggagcgatatggtttctagacatgcatttattgattcgggcccagccacaccaaccagttgggtccgctggtgccagagagaacagatccaccagacgaacacatctatggccccttaccatccaaaatggtggcgatgatggcaataatgattgagtgaacaaacaaagggaagAagaacaaacaaagcattctctaatctttctagaaagttacaagttcctgcttccttaaaccccctagttgctaataaacattcactatcaaatagaagcgggcccaattaggatagtcatctccatcacatccaaatcagaaggtaaatattatttatttatgtagaatttataacaagtacttttattagcatgtgcatgagataaggtatgataatctttcctaaagatgtagtagtagttttccctggaagaaactggtttttcacatattttaccacaatttcccatttacctatgtacttctaaacactctggaacaacgaaagagacaaaagttgtggtccaatcaaggctgaaaaattttaaaagtaaatgacaaacaactaaattcaatgagatataggtttggttgcaagttttaccagagcttgctagatcatagccgaagagggaggaacttgaattgctaaagacagggggattggtatccgtccgcttttcccactgtgaaggcggctggagcgggtgtgctaaatcaccatgccagaactgctgttgtagttgcatgagattccttgctccatggacgcccatgtctggccaggtgacctgctccaaatccattccattcttgtagttcaagcctgttatccttccacactataaataccatagtaagcagagtatatgcccaatagcataatcaatgaacctaaaatgtgaatcatgatcaactttaattgaatttgttatttctgagagatttacagaattacacgacatgcataatagaaaatttacatggaatttcacaaatgcaaaattctgcagaaaacatgtgatccagctacaatggtctaatcatgcatatatctccaagagcaatattatcattatcaatgatgccttaattgtaaaagtaactagttctaggcattctaaggtaaccattgttcaagtgctagccatctagatactacttattgtactaatagtagtaggcattctttctctttaagaggtcaaaggcaaaatttatatggaataattgtagactgttggctgtcaaggcaaagtcaaaagcacgaacaataagtttcacagaaatgcacactctccttactagtacaaaatagtgcaaataaatgatgggaagagataaatttcagttttcagcagaggccaaactactcagttacaaaataatttaaaggagagttctgggccaaagaaatcagctatggtctatgaatcactgatacttccctaaactgccatctcagtatccaataggcaacggatacggatatatgcgtattggcgaagtatcaaagcattttccagtattaaaaaaaaaaggtcgatatgtgggcaagaagggagcaatacatatacacaggaaattgttgttgtaaatccacgcaagctaaacttgcagaaatcttcaagaaacagtatttgtcataatggtacctccgtagtcaagaagttgtctagcccaccaaagtcgaccctcggatttacagctgcgagcctcattgacaagtactgaaacaatcaaaattaccaaacaacaatgacatgagtgaacatcttaaggtaaatgggttatttgggacttaaggtatcataagcaaaaaaaaaaaaagaacagttacctcaacttgcctttgaagagattggacatgattgatgatctcatccagtaccagtgctgttcctgatacctgctacaaaaaacagatcaaacaactgttgtcgataaagtaattacttttcctgagttactacaataaaacaatgaatctcatgatggaaaaaaaaacaattcaaaactatgacaaaaccacataaagtttaacctcagttttggatataaagaatggagctaccactataaaacaagaacatgaaacaaaatagcagcagcagtttggttgcagaatccaagtgcagaagttggtgcatagtactactcttcatttttttcaaagtttgaaatgtgatcttaaaataggcctgtttacgactgttaagttaattagttagagaagctctaagcatatacaacaaaaccaccagcttatattggcagtaatgtactggtttgtttaagacaatggccctcataaatcccacagcggattgaccaatacaatcattcacagtgatggacacctccagcccaaaggctgctgtccttgcagtaaaaataatagtcaaactaccgcaccaatacaacaggctaatcacttccacatgaattcatagttaattaagaccaaccaatactccccaatggtaaactaccctcacagccttacttccacaatccaacacccagaaatgccaacccataagcacacattattgcgtgtgcaatagggatagcaacattccaaagtgagagagagagagAgatggagatatggagatggactcattgcagcattacagcgaccaaacatacaagcccccctccattaagctaccgtcctccggtgtcttttaaagtggctgccacattctgcccagacaacccaccaccaagggccaaaccccatcccctcaccctctcgagttaggtacaccggatcaaggtgtctcccttatcatccacaagggccaagggaaccaaaccaaatgtattatccaccacgcccacttctcctccgtcgtgcaatgcaactcgcccatatggacatgtcgccatgccttgccagagcgaaggataaactccgcaccaccacgtttaagatcgcattgtattggatcgagctgtgaatttgcaagaagtgagccaagcagactgaccatgctgctgctgctgcacaccaacgcttggcattactctttgttggactcctagtgtgcctttggaccgaacagaaacagctatgcgatgacaaatttcactaagccatcaaaagcagtaaaaagaccaccgaaagcaggaaaaaaaaggagtgtactttgcacaaaactccttggcaattgtatccttccaaaggcaaaagctggaagaagtttatctcttagaaaaactcagcaaaataaatttgtagaagaaattcgaagccaagaagatattgctgaccttactgcatccggggaccagctccttgagaagctccatcctcgcattgatcttctcgcgtctcgcctgtttatcacccaaaaaaaatgataataataatgtcataaaaaatccaagaggaaacgaataattaagtaattaacgaggaaagcaaCccctgaaaaggcactaaaacagcgacgtcgccacgtcctaattacccaatcattgcctaatccacagctcgttaaattaaattaaaccccacaaatctaatcccgcgaggagattggcttaaggtttagcgagtgattaattaagtgggtgattagcggcgagcctgccggcgacggcgaactcacgaactcacccgctcggcgaggctgtggctgtcggtggcttgccctcttctcgccctcacgtgcacgtacgccggcttctcgtcctcgccgccgtcgccaccgtcctcgccgctcgccgccgtcttccccttcttcgcagccgccttcccctgcagcggaatccaaaggagagacgaaatgagaaacgaagccgaggggaaagcagcggagtgcgcgcgcgcgcgcgacgcgacgagacgagataccttggaggcggggtcgggcttgcgcttggaggaggaggaagggggagggggaggaggaggcggcggggagggcggcgaaggggaggcgaacgcggagaaccgggctgcgcggtcgacgaggtgcgggtcggcggggaacgcgggCgggggcggcggcgcggaggcggcggcggtggggagaaggagctccatcgcctgggaggtcgggagccccagcagcgcggtgaaggagcccccgctgcctccaccgttggaggaagagcgcgcggcggaggcgagcggcgggtggatctcgcccacggcggaggagaggtccggcggcggCggcggggaatggtggtgcattggcgcggaggcgagagactgcggcggcgaagttggggacgaggaggaggccggaggcgaGgggggtggggggagaatagtggaggtatttatagaggtcggcgtcgcgatgtgctttgctttctctttgcctttcgcttcgctctcggcctctctcggcgcgagtca
More
|
||||||||||
| CDS seq | atgcaccaccattccccgccGccgccgccggacctctcctccgccgtgggcgagatccacccgccgctcgcctccgccgcgcgctcttcctccaacggtggaggcagcgggggctccttcaccgcgctgctggggctcccgacctcccaggcgatggagctccttctccccaccgccgccgcctccgcgccgccgcccccGcccgcgttccccgccgacccgcacctcgtcgaccgcgcagcccggttctccgcgttcgcctccccttcgccgccctccccgccgcctcctcctccccctcccccttcctcctcctccaagcgcaagcccgaccccgcctccaaggggaaggcggctgcgaagaaggggaagacggcggcgagcggcgaggacggtggcgacggcggcgaggacgagaagccggcgtacgtgcacgtgagggcgagaagagggcaagccaccgacagccacagcctcgccgagcgggcgagacgcgagaagatcaatgcgaggatggagcttctcaaggagctggtccccggatgcagtaaggtatcaggaacagcactggtactggatgagatcatcaatcatgtccaatctcttcaaaggcaagttgagtacttgtcaatgaggctcgcagctgtaaatccgagggtcgactttggtgggctagacaacttcttgactacggagtgtggaaggataacaggcttgaactacaagaatggaatggatttggagcaggtcacctggccagacatgggcgtccatggagcaaggaatctcatgcaactacaacagcagttctggcatggtgatttagcacacccgctccagccgccttcacagtgggaaaagcggacggataccaatccccctgtctttagcaattcaagttcctccctcttcggctatgatctagcaagctctgagatgagcgagagatactgtgggttcttttcttgctga
More
|
||||||||||
| Protein seq | MHHHSPPPPPDLSSAVGEIHPPLASAARSSSNGGGSGGSFTALLGLPTSQAMELLLPTAAASAPPPPPAFPADPHLVDRAARFSAFASPSPPSPPPPPPPPPSSSSKRKPDPASKGKAAAKKGKTAASGEDGGDGGEDEKPAYVHVRARRGQATDSHSLAERARREKINARMELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTTECGRITGLNYKNGMDLEQVTWPDMGVHGARNLMQLQQQFWHGDLAHPLQPPSQWEKRTDTNPPVFSNSSSSLFGYDLASSEMSERYCGFFSC |
||||||||||
| Function | Transcription factor bHLH48 [UniProtKB/Swiss-Prot:Q8VZ02] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0022320 | OsLima_06g0022320.02 | Chr06 | 25891955 | 25895171 | - | NAM | ||
| CDS seq | atgcaccaccattccccgccGccgccgccggacctctcctccgccgtgggcgagatccacccgccgctcgcctccgccgcgcgctcttcctccaacggtggaggcagcgggggctccttcaccgcgctgctggggctcccgacctcccaggcgatggagctccttctccccaccgccgccgcctccgcgccgccgcccccGcccgcgttccccgccgacccgcacctcgtcgaccgcgcagcccggttctccgcgttcgcctccccttcgccgccctccccgccgcctcctcctccccctcccccttcctcctcctccaagcgcaagcccgaccccgcctccaaggggaaggcggctgcgaagaaggggaagacggcggcgagcggcgaggacggtggcgacggcggcgaggacgagaagccggcgtacgtgcacgtgagggcgagaagagggcaagccaccgacagccacagcctcgccgagcgggcgagacgcgagaagatcaatgcgaggatggagcttctcaaggagctggtccccggatgcagtaaggtatcaggaacagcactggtactggatgagatcatcaatcatgtccaatctcttcaaaggcaagttgagtacttgtcaatgaggctcgcagctgtaaatccgagggtcgactttggtgggctagacaacttcttgactacggaggtaccattatga
More
|
|||||||
| Protein seq | MHHHSPPPPPDLSSAVGEIHPPLASAARSSSNGGGSGGSFTALLGLPTSQAMELLLPTAAASAPPPPPAFPADPHLVDRAARFSAFASPSPPSPPPPPPPPPSSSSKRKPDPASKGKAAAKKGKTAASGEDGGDGGEDEKPAYVHVRARRGQATDSHSLAERARREKINARMELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTTEVPL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0022320 | OsLima_06g0022320.01 | Chr06 | 25889042 | 25895339 | - | NAM | ||
| CDS seq | atgcaccaccattccccgccGccgccgccggacctctcctccgccgtgggcgagatccacccgccgctcgcctccgccgcgcgctcttcctccaacggtggaggcagcgggggctccttcaccgcgctgctggggctcccgacctcccaggcgatggagctccttctccccaccgccgccgcctccgcgccgccgcccccGcccgcgttccccgccgacccgcacctcgtcgaccgcgcagcccggttctccgcgttcgcctccccttcgccgccctccccgccgcctcctcctccccctcccccttcctcctcctccaagcgcaagcccgaccccgcctccaaggggaaggcggctgcgaagaaggggaagacggcggcgagcggcgaggacggtggcgacggcggcgaggacgagaagccggcgtacgtgcacgtgagggcgagaagagggcaagccaccgacagccacagcctcgccgagcgggcgagacgcgagaagatcaatgcgaggatggagcttctcaaggagctggtccccggatgcagtaaggtatcaggaacagcactggtactggatgagatcatcaatcatgtccaatctcttcaaaggcaagttgagtacttgtcaatgaggctcgcagctgtaaatccgagggtcgactttggtgggctagacaacttcttgactacggagtgtggaaggataacaggcttgaactacaagaatggaatggatttggagcaggtcacctggccagacatgggcgtccatggagcaaggaatctcatgcaactacaacagcagttctggcatggtgatttagcacacccgctccagccgccttcacagtgggaaaagcggacggataccaatccccctgtctttagcaattcaagttcctccctcttcggctatgatctagcaagctctgagatgagcgagagatactgtgggttcttttcttgctga
More
|
|||||||
| Protein seq | MHHHSPPPPPDLSSAVGEIHPPLASAARSSSNGGGSGGSFTALLGLPTSQAMELLLPTAAASAPPPPPAFPADPHLVDRAARFSAFASPSPPSPPPPPPPPPSSSSKRKPDPASKGKAAAKKGKTAASGEDGGDGGEDEKPAYVHVRARRGQATDSHSLAERARREKINARMELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTTECGRITGLNYKNGMDLEQVTWPDMGVHGARNLMQLQQQFWHGDLAHPLQPPSQWEKRTDTNPPVFSNSSSSLFGYDLASSEMSERYCGFFSC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g41060 | RBH | 0.378483 | 0.111109 | 0.726770 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0613500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0022330 | RBH | 0.000000 | 0.0 | 3.872675 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0022180 | RBH | 0.048822 | 0.0 | 1.707334 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0022280 | RBH | 0.761722 | 0.462436 | 10.033272 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0022000 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0022410 | RBH | 0.635214 | 0.000000 | 7.173393 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0386000 | RBH | 3.8945385 | 0.5876255 | 7.9329035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0021860 | RBH | 0.000000 | 0.215442 | 1.577294 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0366000 | RBH | 3.990711 | 0.453617 | 15.746557 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0022240 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0021930 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0022600 | RBH | 0.110869 | 0.146559 | 1.187026 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0022190 | RBH | 0.000000 | 0.841423 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G021960 | RBH | 0.0 | 0.0 | 8.362581 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0022160 | RBH | 0.740088 | 0.000000 | 3.751222 |
