Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0021330 | OGI:06066640 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:24968475-24970484 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagtatacatcaagtgaagatgatgagctggttgaaggttacatggatgttgaggatgatacaggcaccagcaatactgatcaaggaacaagtctgatgccttctgagatgcgtagcatccgtccccgtccgtcgtctgttggcaacggtcggctgatggctgctgatgggttgggcacaaacgatgacccatgcctaggcatggagtttgagtccgatggagctgcacgggcattctacaacgcgtacgcgctgcgccttgggttcggcattcgcgttgcccggtcgcgcagcgagcggaggaagggtgttgagctacttatcatgaagcgttttgtgtgcctgaaagagggacatcacaagaagaaggatgccgagcctagcgacaagaaaaagaggaagcggctctcgataagggatggctgcccagcgatgatggaagtggtgaggaggggtccggaaaaatgggtcatcacaaagttggtcctggagcatactcatgtgattcttagcccagacagggtgcgggaggtccagctccgtcgcctctctggaaagtgcgcagagcatgataatcaattgcaggagctgcgccggaatgtgtttggagatacagatgcgcaaggccttttcaactacttgaagagaatgcagtcggagaactctggttttttctactccatacaagttgacagtaagaactgtgttagcaatgcagtttgggctgatgctagagccagaatgtcatacacatactttggggatgctgtttattttgacactacttatagtaaaaatgagaatatgttaccctttgcagctttcacgggtgtgaatcaccatggtgatactgttccttttggttgtgcacttgttttggataggacagaatcttcatatacctggctatttgagacatggctgacagcagtgggtagacggttgccgttttcctttacaactgatgaaggcaaagcaattgcatcagcagttgcaaaagtatttcctcagtgtttccatcgtctttgtagatggcgaattttgtctagatgcaagaagaagttgtctgatgactacgtgagatttcccaatctccatgatgagctcagaagatgcatcaacgagtgttatactgaggttgcttttgatatgttctggggtactattcttgacaaatatggcctgagggagaacagttggttgcgatcaatatttgaagcaagacacagatgggttcctgcatacctgacaacaagctccttctttgcagaattgacattgacccagagaggagaaacaatcggtaggttttttaggaataacttcagcacaagagttcctctcgatgaatttaccactaaatttgaccaacacatagacaatttgtatgtacatgaaactcagaaagatcttggttcatctcatccggaacagatcctgaaaaccaatatagccttggaaaaacaagcaaggagcatctacaccaatgccgtgtttgaaatattccaaacggagttgtttgaagcattgcagcattatgctgttaaggttcatcaggatggaccttactccaagtactatgttgacagagatgatcctccaacaaggcacactgttttctacaatgttgccgagaagaaggcttggtgcgattgctgcaggtacgctttctcagcaatattgtgcaggcatgtgcttggagttttcatcttagctggaatcatggtgcttccggagacatgcatcgtgaagcgatggacaaagagggcaaagactgggccagaattaattgggcataatcttgagaatggaaattgctacatggattcttcaacttcaaggtataatgatctcattcatgatgctatcaaatgtgcagagaagggagctgtatcagcagataacttcagagttgcaaaggaaatactccgcaaagccttcatggaaatcaagtgtcttggagaaaaactgactgacgatgacctgcagcaggttgacagtagatag
More
|
||||||||||
| CDS seq | atggagtatacatcaagtgaagatgatgagctggttgaaggttacatggatgttgaggatgatacaggcaccagcaatactgatcaaggaacaagtctgatgccttctgagatgcgtagcatccgtccccgtccgtcgtctgttggcaacggtcggctgatggctgctgatgggttgggcacaaacgatgacccatgcctaggcatggagtttgagtccgatggagctgcacgggcattctacaacgcgtacgcgctgcgccttgggttcggcattcgcgttgcccggtcgcgcagcgagcggaggaagggtgttgagctacttatcatgaagcgttttgtgtgcctgaaagagggacatcacaagaagaaggatgccgagcctagcgacaagaaaaagaggaagcggctctcgataagggatggctgcccagcgatgatggaagtggtgaggaggggtccggaaaaatgggtcatcacaaagttggtcctggagcatactcatgtgattcttagcccagacagggtgcgggaggttgcttttgatatgttctggggtactattcttgacaaatatggcctgagggagaacagttggttgcgatcaatatttgaagcaagacacagatgggttcctgcatacctgacaacaagctccttctttgcagaattgacattgacccagagaggagaaacaatcggtaggttttttaggaataacttcagcacaagagttcctctcgatgaatttaccactaaatttgaccaacacatagacaatttgtatgtacatgaaactcagaaagatcttggttcatctcatccggaacagatcctgaaaaccaatatagccttggaaaaacaagcaaggagcatctacaccaatgccgtgtttgaaatattccaaacggagttgtttgaagcattgcagcattatgctgttaaggttcatcaggatggaccttactccaagtactatgttgacagagatgatcctccaacaaggcacactgttttctacaatgttgccgagaagaaggcttggtgcgattgctgcaggtacgctttctcagcaatattgtgcaggcatgtgcttggagttttcatcttagctggaatcatggtgcttccggagacatgcatcgtgaagcgatggacaaagagggcaaagactgggccagaattaattgggcataatcttgagaatggaaattgctacatggattcttcaacttcaaggtataatgatctcattcatgatgctatcaaatgtgcagagaagggagctgtatcagcagataacttcagagttgcaaaggaaatactccgcaaagccttcatggaaatcaagtgtcttggagaaaaactgactgacgatgacctgcagcaggttgacagtagatag
More
|
||||||||||
| Protein seq | MEYTSSEDDELVEGYMDVEDDTGTSNTDQGTSLMPSEMRSIRPRPSSVGNGRLMAADGLGTNDDPCLGMEFESDGAARAFYNAYALRLGFGIRVARSRSERRKGVELLIMKRFVCLKEGHHKKKDAEPSDKKKRKRLSIRDGCPAMMEVVRRGPEKWVITKLVLEHTHVILSPDRVREVAFDMFWGTILDKYGLRENSWLRSIFEARHRWVPAYLTTSSFFAELTLTQRGETIGRFFRNNFSTRVPLDEFTTKFDQHIDNLYVHETQKDLGSSHPEQILKTNIALEKQARSIYTNAVFEIFQTELFEALQHYAVKVHQDGPYSKYYVDRDDPPTRHTVFYNVAEKKAWCDCCRYAFSAILCRHVLGVFILAGIMVLPETCIVKRWTKRAKTGPELIGHNLENGNCYMDSSTSRYNDLIHDAIKCAEKGAVSADNFRVAKEILRKAFMEIKCLGEKLTDDDLQQVDSR |
||||||||||
| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0021330 | OsLima_06g0021330.01 | Chr06 | 24968475 | 24970484 | + | NAM | ||
| CDS seq | atggagtatacatcaagtgaagatgatgagctggttgaaggttacatggatgttgaggatgatacaggcaccagcaatactgatcaaggaacaagtctgatgccttctgagatgcgtagcatccgtccccgtccgtcgtctgttggcaacggtcggctgatggctgctgatgggttgggcacaaacgatgacccatgcctaggcatggagtttgagtccgatggagctgcacgggcattctacaacgcgtacgcgctgcgccttgggttcggcattcgcgttgcccggtcgcgcagcgagcggaggaagggtgttgagctacttatcatgaagcgttttgtgtgcctgaaagagggacatcacaagaagaaggatgccgagcctagcgacaagaaaaagaggaagcggctctcgataagggatggctgcccagcgatgatggaagtggtgaggaggggtccggaaaaatgggtcatcacaaagttggtcctggagcatactcatgtgattcttagcccagacagggtgcgggaggttgcttttgatatgttctggggtactattcttgacaaatatggcctgagggagaacagttggttgcgatcaatatttgaagcaagacacagatgggttcctgcatacctgacaacaagctccttctttgcagaattgacattgacccagagaggagaaacaatcggtaggttttttaggaataacttcagcacaagagttcctctcgatgaatttaccactaaatttgaccaacacatagacaatttgtatgtacatgaaactcagaaagatcttggttcatctcatccggaacagatcctgaaaaccaatatagccttggaaaaacaagcaaggagcatctacaccaatgccgtgtttgaaatattccaaacggagttgtttgaagcattgcagcattatgctgttaaggttcatcaggatggaccttactccaagtactatgttgacagagatgatcctccaacaaggcacactgttttctacaatgttgccgagaagaaggcttggtgcgattgctgcaggtacgctttctcagcaatattgtgcaggcatgtgcttggagttttcatcttagctggaatcatggtgcttccggagacatgcatcgtgaagcgatggacaaagagggcaaagactgggccagaattaattgggcataatcttgagaatggaaattgctacatggattcttcaacttcaaggtataatgatctcattcatgatgctatcaaatgtgcagagaagggagctgtatcagcagataacttcagagttgcaaaggaaatactccgcaaagccttcatggaaatcaagtgtcttggagaaaaactgactgacgatgacctgcagcaggttgacagtagatag
More
|
|||||||
| Protein seq | MEYTSSEDDELVEGYMDVEDDTGTSNTDQGTSLMPSEMRSIRPRPSSVGNGRLMAADGLGTNDDPCLGMEFESDGAARAFYNAYALRLGFGIRVARSRSERRKGVELLIMKRFVCLKEGHHKKKDAEPSDKKKRKRLSIRDGCPAMMEVVRRGPEKWVITKLVLEHTHVILSPDRVREVAFDMFWGTILDKYGLRENSWLRSIFEARHRWVPAYLTTSSFFAELTLTQRGETIGRFFRNNFSTRVPLDEFTTKFDQHIDNLYVHETQKDLGSSHPEQILKTNIALEKQARSIYTNAVFEIFQTELFEALQHYAVKVHQDGPYSKYYVDRDDPPTRHTVFYNVAEKKAWCDCCRYAFSAILCRHVLGVFILAGIMVLPETCIVKRWTKRAKTGPELIGHNLENGNCYMDSSTSRYNDLIHDAIKCAEKGAVSADNFRVAKEILRKAFMEIKCLGEKLTDDDLQQVDSR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.108989 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0597800 | RBH | 0.999009 | 1.999418 | 1.365252 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g39680 | RBH | 0.673874 | 1.309794 | 0.342300 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0597800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0021400 | RBH | 0.601642 | 4.134593 | 2.969487 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0021230 | RBH | 0.289499 | 1.211726 | 1.376450 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0021340 | RBH | 0.782509 | 5.552519 | 3.073074 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0021080 | RBH | 0.149453 | 0.099696 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0021480 | RBH | 1.767347 | 1.699872 | 4.019685 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0373100 | RBH | 2.976455 | 3.2122665 | 5.296542 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020920 | RBH | 0.149018 | 0.117166 | 0.328650 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0352000 | RBH | 4.3751825 | 4.1850795 | 11.5239815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0003570 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0021340 | RBH | 0.178685 | 1.701995 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020970 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021650 | RBH | 0.207691 | 0.192236 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0021200 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G021050 | RBH | 0.000000 | 1.139463 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0021310 | RBH | 1.312797 | 6.408066 | 3.457710 |
