Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0021310 | OGI:06066610 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:24957529-24959689 | ||||||||
| Gene Symbol | SPED1, OsSPED1, sped1-D | ||||||||||
| DNA seq | actgtgacttgcagatgaaccttcttccataaataaatattgcattcacttcaaagtgatgttttatgtgttagtgagttttgagtggatatgctgaatacatcaacaagagcaaactgaaaatccaagtatagcatttttaacaagctgacaaatgacagaatcatgctgcgatgataatgttcgtccatccattgttaagaagttaaggttgcacattagatataatcatctgcactgataggcataggcaacaacagaaaaaaaaaatactactggcattggtgtctaaccttgttttttcatctgcagaaccgtgttccatttcctggcaagagtaaaaaaaatccagctctgctacaagcctgaaacaagctagctgaagttcagtagtcctcaaattaactaactgtacaagcctgatcactcgaatgtctgttcagacaaggttcttcaaaattgctaatgaaacggcttccagtgattgatcatgcttctgttggtccagtcaaactaatggatgcttcaacaattcctttgtccaagcattatatgcttcaacaactcctcagtaccccttcacctcaatcaagctacaccctgcagtcttcttgacagtagggtgtgccatcttgccccgtacccttatcacatcctcccatctacttgctgttgcatatacattagacatgagcaaattcacatcagtaatttgggaatcttgctcacagattcgtttggttaaccgttcactcatctcaacaTtcccatgagccttgcaagcagtgaggagtgcaccaaacagtggcatagcatccTttttaattggaacgtcaccgatcaacctctcagcttcatctagtagaccagcacgacctaggaggttcacaaggcagctatagtgttcaactcttggttctagctgataaacctccctcattgcatggaactgcttccggccttcatcaaccaagccaccatggcagcatgcacttagcaccccaataaacgtaacaccgtcgggcttaactttacttctctgcatatcttgaaacagttcaagagctctaccagcctgaccatttgtggccagcccacagatgatggcagtccaagctgtggcatctctgccttgcattcgccagaagacctctagagacttctcaatgtgcccacatttagaatacatgtcaatcaacgcggtgcctaggactgcatcgatcttcattttcctttgttcagcatactggtgaatccattcaccttgatcaagagcgccaagattggcacagcatgtcaggagagtgacaacagtgaacctgtctggctcaacccgttgcatctgcatatctcggaacaatgtcagcgcctcctcgaagcatccgtgttgcacacacgcattgatcattgcagtccacagaattagatccttctctttgcactggttgaagagcactctggccttgtccagctgcccagcaaggccatatcccgacacaagtatggtccaagaaattatgttcctcgcaggcatttgctcgaacaatttcaccgcctcttccaagcaatcattcttcgtgtacatgtccagcagagcatttgcaactggcagattgaaaccgaagacgttatccatgtacacatgaatcctccttcccaagctcaggtccctcgctctagagcacgctgtcaccgccgtcaccaatgtcaccctgtcaggtgtgacaccgcttctctccatctgttcagacaaagcaactgccgccgagtaccgcccgcacctgatgtagcacctgaccatcatgttccacagcaccagcgccctactcggcatttcgtcgaacaccttccgcgcgatgtccacgcgccccagcatcgtgtacatctccatcagcgagctcccggtgtaggcgtcccaccggaacccggtcttgatggcggccgcgtgcgccgtgcgcccctcgaccgacagcttgaggaccccgacggccctgagcacgaacgggtaggtgaagctgtccgccacgagtccccgcgcgcggaggtcgtagtacaccgccatgacgcgcgcgaagctcccccgcctcgccagcgtcctgatcagcacgttgcactcccagagcggcatcccgtggcccctcctcgccgccgccatcgccat
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| CDS seq | atggcgatggcggcggcgaggaggggccacgggatgccgctctgggagtgcaacgtgctgatcaggacgctggcgaggcgggggagcttcgcgcgcgtcatggcggtgtactacgacctccgcgcgcggggactcgtggcggacagcttcacctacccgttcgtgctcagggccgtcggggtcctcaagctgtcggtcgaggggcgcacggcgcacgcggccgccatcaagaccgggttccggtgggacgcctacaccgggagctcgctgatggagatgtacacgatgctggggcgcgtggacatcgcgcggaaggtgttcgacgaaatgccgagtagggcgctggtgctgtggaacatgatggtcaggtgctacatcaggtgcgggcggtactcggcggcagttgctttgtctgaacagatggagagaagcggtgtcacacctgacagggtgacattggtgacggcggtgacagcgtgctctagagcgagggacctgagcttgggaaggaggattcatgtgtacatggataacgtcttcggtttcaatctgccagttgcaaatgctctgctggacatgtacacgaagaatgattgcttggaagaggcggtgaaattgttcgagcaaatgcctgcgaggaacataatttcttggaccatacttgtgtcgggatatggccttgctgggcagctggacaaggccagagtgctcttcaaccagtgcaaagagaaggatctaattctgtggactgcaatgatcaatgcgtgtgtgcaacacggatgcttcgaggaggcgctgacattgttccgagatatgcagatgcaacgggttgagccagacaggttcactgttgtcactctcctgacatgctgtgccaatcttggcgctcttgatcaaggtgaatggattcaccagtatgctgaacaaaggaaaatgaagatcgatgcagtcctaggcaccgcgttgattgacatgtattctaaatgtgggcacattgagaagtctctagaggtcttctggcgaatgcaaggcagagatgccacagcttggactgccatcatctgtgggctggccacaaatggtcaggctggtagagctcttgaactgtttcaagatatgcagagaagtaaagttaagcccgacggtgttacgtttattggggtgctaagtgcatgctgccatggtggcttggttgatgaaggccggaagcagttccatgcaatgagggaggtttatcagctagaaccaagagttgaacactatagctgccttgtgaacctcctaggtcgtgctggtctactagatgaagctgagaggttgatcggtgacgttccaattaaaaAggatgctatgccactgtttggtgcactcctcactgcttgcaaggctcatgggaAtgttgagatgagtgaacggttaaccaaacgaatctgtgagcaagattcccaaattactgatgtgaatttgctcatgtctaatgtatatgcaacagcaagtagatgggaggatgtgataagggtacggggcaagatggcacaccctactgtcaagaagactgcagggtgtagcttgattgaggtgaaggggtactga
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| Protein seq | MAMAAARRGHGMPLWECNVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRTAHAAAIKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQLEPRVEHYSCLVNLLGRAGLLDEAERLIGDVPIKKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVYATASRWEDVIRVRGKMAHPTVKKTAGCSLIEVKGY |
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| Function | Pentatricopeptide repeat-containing protein At1g31430 [UniProtKB/Swiss-Prot:Q9C866] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0021310 | OsLima_06g0021310.01 | Chr06 | 24957529 | 24959689 | - | NAM | ||
| CDS seq | atggcgatggcggcggcgaggaggggccacgggatgccgctctgggagtgcaacgtgctgatcaggacgctggcgaggcgggggagcttcgcgcgcgtcatggcggtgtactacgacctccgcgcgcggggactcgtggcggacagcttcacctacccgttcgtgctcagggccgtcggggtcctcaagctgtcggtcgaggggcgcacggcgcacgcggccgccatcaagaccgggttccggtgggacgcctacaccgggagctcgctgatggagatgtacacgatgctggggcgcgtggacatcgcgcggaaggtgttcgacgaaatgccgagtagggcgctggtgctgtggaacatgatggtcaggtgctacatcaggtgcgggcggtactcggcggcagttgctttgtctgaacagatggagagaagcggtgtcacacctgacagggtgacattggtgacggcggtgacagcgtgctctagagcgagggacctgagcttgggaaggaggattcatgtgtacatggataacgtcttcggtttcaatctgccagttgcaaatgctctgctggacatgtacacgaagaatgattgcttggaagaggcggtgaaattgttcgagcaaatgcctgcgaggaacataatttcttggaccatacttgtgtcgggatatggccttgctgggcagctggacaaggccagagtgctcttcaaccagtgcaaagagaaggatctaattctgtggactgcaatgatcaatgcgtgtgtgcaacacggatgcttcgaggaggcgctgacattgttccgagatatgcagatgcaacgggttgagccagacaggttcactgttgtcactctcctgacatgctgtgccaatcttggcgctcttgatcaaggtgaatggattcaccagtatgctgaacaaaggaaaatgaagatcgatgcagtcctaggcaccgcgttgattgacatgtattctaaatgtgggcacattgagaagtctctagaggtcttctggcgaatgcaaggcagagatgccacagcttggactgccatcatctgtgggctggccacaaatggtcaggctggtagagctcttgaactgtttcaagatatgcagagaagtaaagttaagcccgacggtgttacgtttattggggtgctaagtgcatgctgccatggtggcttggttgatgaaggccggaagcagttccatgcaatgagggaggtttatcagctagaaccaagagttgaacactatagctgccttgtgaacctcctaggtcgtgctggtctactagatgaagctgagaggttgatcggtgacgttccaattaaaaAggatgctatgccactgtttggtgcactcctcactgcttgcaaggctcatgggaAtgttgagatgagtgaacggttaaccaaacgaatctgtgagcaagattcccaaattactgatgtgaatttgctcatgtctaatgtatatgcaacagcaagtagatgggaggatgtgataagggtacggggcaagatggcacaccctactgtcaagaagactgcagggtgtagcttgattgaggtgaaggggtactga
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| Protein seq | MAMAAARRGHGMPLWECNVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRTAHAAAIKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQLEPRVEHYSCLVNLLGRAGLLDEAERLIGDVPIKKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVYATASRWEDVIRVRGKMAHPTVKKTAGCSLIEVKGY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0597500 | RBH | 0.664091 | 0.767196 | 0.767465 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g39650 | RBH | 0.228803 | 0.311591 | 0.106436 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0597500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0021380 | RBH | 0.0 | 0.0 | 0.917524 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0021210 | RBH | 0.029724 | 0.238936 | 0.442907 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0021320 | RBH | 0.176816 | 0.0 | 0.455519 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0021060 | RBH | 0.0 | 0.027296 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0021460 | RBH | 2.423231 | 1.598658 | 1.046999 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0372900 | RBH | 0.8571775 | 1.2074115 | 0.854386 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020900 | RBH | 0.0 | 0.074258 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0351800 | RBH | 0.8696285 | 1.0444705 | 3.179997 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0003550 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0021320 | RBH | 0.084445 | 1.398631 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020950 | RBH | 0.776432 | 5.846533 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021630 | RBH | 0.254030 | 0.0 | 0.053289 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0021180 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G021030 | RBH | 0.0 | 0.333744 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0021290 | RBH | 0.219920 | 1.829268 | 1.088453 |
