Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0020120 | OGI:06061370 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:23300429-23307824 | ||||||||
| Gene Symbol | KO1, OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7, D35, d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A, OsKOS3 | ||||||||||
| DNA seq | tcacacccttcctctgggcgtgaggtggacatgaagcgggtggagcttgtaggcggtgagctgcacggtgtccaccttctcctcgtcgccctccctcagcctccacctgaactcctgcacgaaacgcgcgacggcggcgcacgcgatgtgcattgcctgcaggctccccgcgcaggccctcctcccggcgccgaacgccatcgtcttgtacatgtccgccacctcgagcctcccgccggcgaacctctccggcacccactcctccggcgactcccactccttcctgttcatgttgcacccgtacaggttgatcaccatctgccacatgaccatcacttgttagattgtcaggggattttgatcactgatcggcgagttgaccagtgattgaaattttggactccccaggcaagcaattacatcccacccgaaaactctacgagaagtcaagaacgacaagtttgcgtgatatgataaaaaatactccgtccaaaaatataagaacatagcacatgatagaatatttcctagcactgtgtatcaggatagaggaaatgtcatatccggtcctaggcttctatattttaggacagagggagtattggatttcaacaggatgtgccaaggcaggtttgaaacaaggatatagaagaaaagtgtagcttaatcttgtgttatttttattcaaagcatacttgttttcttatggtccactgtggatatagaggtcagatttctatcaattatgttaaaaataacgcccaaaattttcagaattttccaaagttttgtgaatttggtcaaaattttatacaaattcggttcaaaactcaaatagtttcgtgcaaaacaagtagagaaaacaccaaagtttcggcccgagtggttgtgcttacctcggtgccggcggggacgtcgtagccggcgagcttggtgtcctcgtggacgaacctcgggggtatgagcgggacaggggagtggcggcgcagcgtctcgtggaagacggcgttgaggtacggcagccgtggaaggtgctcctcggtgaccgtctcgtcgccgcacacctcccggatctcttggtaaagccgttcctggcatgacaacaagaagaaggccaaaaataaaaagttttggttgataatgccaagaatggcaacaatgagctggaacagagtaacaaaatttcttgcctgtttgtcagggttcttggcaagctcatacatggcccattctgtggtgaccaaggtagtatctgcagcctctatgagtgcctcccacactagcatcgtcagttgctcatctgtcagtgtgttctctgccagcaagaagtccagatagcatgtctttgcctgcacatatatctcagtttcatggagttaaaagataatctctgcaagtaatttttttttttggcatagaagaaaagatgaaagatgtcatttgtcaaagtatgcctttgctcacctctccacgcacaatcctttccttctgctgcttgatcaaggcgcgcatcaccgcagttcgtctagtttctgtagtaaacactcttgtttcgaagctcttgtttggaacccagctgaggtaggggaagaaatctctccagtcgacctcaattgcgcacatcatcatgtcagtcacagtagcattgtagatttcttccttcgaaatgtccctcccaaattcatccacatagactgaactcacatcctctcctaagctctgaagtttgcgacattaattgttagtgtcggaaataacaaatcgaccatctgacagttcaagttcagagacaatccaaacctggatcatggacaaccggaatagctcatccttgaaaacatctctgaatatcagaggagcatgtgggtcatctttcaccagtttatggaaagtgcttaacatgttatggatcatcatatctcttgtgtcacgaaattgtttctgaaatttatggaagcatttgcgttgtcagaccacagataactgaaactctgaaagtgtaactggtagcagataataaaatctgaaaatgcacactggagttattgagaataatcagtactaaaaatgaaaaataaaattgttgagtagtatacctgtgcagaagtacccaacatgcttgacatgacataacgcttcaccattttgtggaaatcaccatagtcgctggtagcaaccatggatttatcacgagtaagcactgtcagtgctttggatagctttcgggtagatatggatgagaattttgcaaccatcgcctgcaaaagagagtacagtaaatccatggtttcttgagactatcagtcttgagctatgcaagtcaataaaaatgatagacaacttctaagttacctccttggctacttcagttgaattgagcacaactacggaagaagccccggttcttatagtgtagattggcccgtaaatttcagcccattttgcaaaggtctgatgaggcttcttttctttcagttgatgcagatttccgataatgggtaaaccaggaacagctgcatgacaatgaaatagaatcataggagacttagaacttgcacactagactaaaaacttgaaatgagttattctgataatttgtttgcatagatgataacaccatatattcatgcaagtaactagcctagtgatgaattagtgttgtccctttcttcggtgatgttgtcagattttgtcagatattgacaagatgatggtcgaatagaattaggtgactatagaccacagtaattaatactttgcactctcaactcacaagtgggtcaacaaaatatatatactccatccgtttcatattataaattataaattgttttgacttttttctttaaatcaaacttcttgaaagtttgatcaagtttataaaaaaaatatagcaatacttatagaactaaattagtttatctacattgaacatattttcatagtttctttatttcaatttgattaaacctaaagaagtttgacttataaaaaatcaaaatgaatagcgctgatctgaatattttcaaaattcccctgttcgtttctatgggtcatcaggtttttctttatttattatgccatttactctccTtttttttctgccttggactcttggtgttgtccatacacattctgccattcgcatagacatgccgattgggtttggttaattacatattgtcgatgttgttccacgaacacatgatgtaccatgtgtctccagtgaaactgggagtcttttgtctacttatactatatttactttttaaaaattttgatatatcaaaaggaagattgaaaaacaatcgacaaatttagggaatgtcatttcagttatgtttgcaaagtaataacgcgagttatgtgaatttattggctgttaatggaaaacagatgaatgtccttccatcatcatggggcaataagcgcaagctaacacagcacgaaatctttataaaacagaggaacaaatttggaagctttttatggattaatgaaagttttctaaagtttgttaaggttatgacatactatacaaaaggctagtctctatgtgatatcattaaattctttacttactcagaatgtttcactctatgatagtttcctaattttcaaatccacactacgttaatcagaagaactaatgtgctagagaaaaaaatcaagagaacaataattaccaaaacaactgctatccaagtggtccgatgaggatagctttgggaaaagctactgcaattgaagaatcaatttctaccgttgcaactgaaaaatcacgctcccagccaaaagtaaacggaaggctacagtaagtcactggtaagaaaggcgttccgctttatgcttcatacaaatttatatgtttaaataaaattattatctgcaaacaagcaagctaccgccaaacccctcggctcatcctctatctgtaatccagcaccggttaatttcaaggtaccagtaagcaggaaatgcctctggcataaaaatttcaaatttgtttgaatttaggggagggggatcaaattcatgaaaaaatattcgaaattccaaatataaaaaaaatcgtctgaaattttggtaatagagagagagaaaggactatctgtttggagagcaggccgtacagtaacatagtgaggtgtgcgattgttcagccccaaatattcttaattacatgaagtgctaagtatatactccttctgtcacatagaaaatcaacatagtaccggtgtgatacatcgtagtactacgaatatgatagatctatatccagatttatagtaatatgatgtgacacatctggtactacgttgattttttatggaacagagagagtacttaattagcagcataactaaattgctaagcccagatggtcagagaacctaagacccaaaactaaaagtcgaaggcacaacagggcttaatatctaaagctaaatcgattataactagatgtaattatatgttgaggtcccattatacctttcgcaccaggacctataattccttgctacagccctattggagggcatgaatgcatgccctctgaagagcaacttgcttttcggtaaatttcatccaaacaattcaaagtgtgatctagtgattctcgaaacaatttggcccatcttttatttatttctttatttagaattcaatcctgtcagtgcaatgcctatgcttgtttgagaaaatactaaacatcccatcattctgttcgcagataatggaaatgctttatattttcggtctctaccgtgatcaccacgaggtatatcgttctacttgaataaaaaaaaaagaataaggatccccctacaaatcgcgcgcccgatcgtgggtgggggaaaatcgggcgctgacgtcatgctgacgtcagcgccacgtatgtgtgcaaaaacactttaaactattttttctcttaaattatttatccaaatcatgatccgattgcactattaaatttgttacaattaaatcttcaaaataagaccacacatggatatattccgatgaaatttttttagcttattattgaattatttttaaacgttgcacgatgttccaccaaatatatcggaattgtttcactaagtagatcggaaatgtttcaatcgtttaaatcagacgttgtttcaccttatatgaaaacaatgtttcagcaaatagcgaaagaatgtttcagttcactgcaatatttgatccatacatagtgaaacattataagtacactcggtgaaatatttttggtggaacaaaaaatgaaacgaattcccttaatagatggtttccaaaatatgtgggtgatttattgcaaaagaatgtttcggtttactacaacattagatctatatatagtgaaacattgtgagtatattagttgaaacattttttgtggaacaaaaaatgaaacgaattcccttaatagagggtttccaaaatatgtgggtgatttgttgcaatagagtatgtgatggagacatatggcaggtggaaataaagatcgtggtgggacccaggatatacatgcgtgtgcgtgagaggcggaccgcggggggagcgcccgattttttgcccccctCccctccccccgtcggtggaccgacgaacagcattttcgaaagaataacatgaagaaaaggaaaaaaaaaaaggcaatgtaaagcaaaggagaggatagattcttctgatcgtctctgcctaaaggcaggacaaaagcttccgtttccaacaaagggagatcaaaaggaggggagaaaattcaagatgttccgacgcgagcagcggcatcaaccgctgtctccgtctccgtctccgagtgatatcaatggagagatcgagagagagaaagagtgagaagagacagtggcggagaacggacgaacagtgcgaaaattgtggcgaatgcaaacttgattggctctcaaatcttcaaagggaatcaagagatcagagtttttgatttcaagcagcaacacacatctccaattcctcataaactcaccggtgcgatgcgaatctcacctctctccaccaattcgccgatcgcgcgccactcaccgaggcggcattccatcaaacaatgacagcgggtgagtgagagagatgcagagatttggagggggggggggggggggggggtgacctgggggcgcgttggagcatttccttggcgcgatcacgctggccctctcggcgagcgcggccgcagcgacgaacccttcgaccgctgccaccgctgccgctgccccgaccccgccgggagtacaaactaaagatcctaactttagtcccggttagcgttacgaaccggaaatacaaagagtctctccacttgtgactcgtactggaacagcagccagagctacgtgctgaccaagggatggagccgattcgtgagggagaagggcctctgcgccgacgagctgctcttcatcgactgctagaagaacaacacggcggcggccaccggcgacgagaagccaattacaagcagcgaagcagcacgtgtcgtgaggctgttcggcgtggacatcgccggaagcgggagagggcggtggaaatggggcaagaggcgttcgtgccgcatgtgcgcgcgggctaagagctgcggcggcgcggcccaggtggtgcggaagcggaaggcccatgaaatcgggtgggcccattagcacagcgggccaacgcgggagcgaggtcgaccgtccgatctgttggacggccaggatctcccccgtgccggagaaatcgccggcggctgaggtaaaccctaatccccctttctattcttctcttctccccgatctctcccggcgagggagcgtgtgagtgggtgccggcgatggcggagacggcgaggtggagcacgcgtgcgacgacgagcgccgagcggctccatctgcgccggctgggggggtgtgcccgtgggcagcaccaagccgtggtccggcgagcgccgtgcggcccggacctcgtcggcggggcctggcgcgaccgcgatggatgagatggcggcgaggccacttcctgttgattcccggtgcgatgcgaatctcacccctctccaccgatggtaagtgccaatccccaccactcaccaaggcggcattccatcaaacagtgacagtgagtgagtgagagagagattgagagatggggggcgggggggggggggggggggcggctgacctgggggcgcgttggggcgtttccttggcgcgatcacgccggccctctcggctagcgcggccacggcgacgaaccctccgaccgccgccaccgccgccgccgccgcccccgcgccgcccggcacgaacgcctccatggatcacacgctgtgcgcgcgctcgccgccgtcgccctcgtccgcttcactcgatcgtgg
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| CDS seq | atggaggcgttcgtgccgggcggcgcgggggcggcggcggcggcggtggcggcggtcggagggttcgtcgccgtggccgcgctagccgagagggccggcgtgatcgcgccaaggaaacgccccaacgcgcccccagctgttcctggtttacccattatcggaaatctgcatcaactgaaagaaaagaagcctcatcagacctttgcaaaatgggctgaaatttacgggccaatctacactataagaaccggggcttcttccgtagttgtgctcaattcaactgaagtagccaaggaggcgatggttgcaaaattctcatccatatctacccgaaagctatccaaagcactgacagtgcttactcgtgataaatccatggttgctaccagcgactatggtgatttccacaaaatggtgaagcgttatgtcatgtcaagcatgttgggtacttctgcacagaaacaatttcgtgacacaagagatatgatgatccataacatgttaagcactttccataaactggtgaaagatgacccacatgctcctctgatattcagagatgttttcaaggatgagctattccggttgtccatgatccagagcttaggagaggatgtgagttcagtctatgtggatgaatttgggagggacatttcgaaggaagaaatctacaatgctactgtgactgacatgatgatgtgcgcaattgaggtcgactggagagatttcttcccctacctcagctgggttccaaacaagagcttcgaaacaagagtgtttactacagaaactagacgaactgcggtgatgcgcgccttgatcaagcagcagaaggaaaggattgtgcgtggagaggcaaagacatgctatctggacttcttgctggcagagaacacactgacagatgagcaactgacgatgctagtgtgggaggcactcatagaggctgcagatactaccttggtcaccacagaatgggccatgtatgagcttgccaagaaccctgacaaacaggcaagaaattttgttactctgttccagctcattgttgccattcttggcattatcaaccaaaactttttatttttggccttcttcttgttgtcatgccaggaacggctttaccaagagatccgggaggtgtgcggcgacgagacggtcaccgaggagcaccttccacggctgccgtacctcaacgccgtcttccacgagacgctgcgccgccactcccctatggtgatcaacctgtacgggtgcaacatgaacaggaaggagtgggagtcgccggaggagtgggtgccggagaggttcgccggcgggaggctcgaggtggcggacatgtacaagacgatggcgttcggcgccgggaggagggcctgcgcggggagcctgcaggcaatgcacatcgcgtgcgccgccgtcgcgcgtttcgtgcaggagttcaggtggaggctgagggagggcgacgaggagaaggtggacaccgtgcagctcaccgcctacaagctccacccgcttcatgtccacctcacgcccagaggaagggtgtga
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| Protein seq | MEAFVPGGAGAAAAAVAAVGGFVAVAALAERAGVIAPRKRPNAPPAVPGLPIIGNLHQLKEKKPHQTFAKWAEIYGPIYTIRTGASSVVVLNSTEVAKEAMVAKFSSISTRKLSKALTVLTRDKSMVATSDYGDFHKMVKRYVMSSMLGTSAQKQFRDTRDMMIHNMLSTFHKLVKDDPHAPLIFRDVFKDELFRLSMIQSLGEDVSSVYVDEFGRDISKEEIYNATVTDMMMCAIEVDWRDFFPYLSWVPNKSFETRVFTTETRRTAVMRALIKQQKERIVRGEAKTCYLDFLLAENTLTDEQLTMLVWEALIEAADTTLVTTEWAMYELAKNPDKQARNFVTLFQLIVAILGIINQNFLFLAFFLLSCQERLYQEIREVCGDETVTEEHLPRLPYLNAVFHETLRRHSPMVINLYGCNMNRKEWESPEEWVPERFAGGRLEVADMYKTMAFGAGRRACAGSLQAMHIACAAVARFVQEFRWRLREGDEEKVDTVQLTAYKLHPLHVHLTPRGRV |
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| Function | Ent-kaurene oxidase 2 [UniProtKB/Swiss-Prot:Q5Z5R4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0020120 | OsLima_06g0020120.01 | Chr06 | 23300429 | 23307824 | - | NAM | ||
| CDS seq | atggaggcgttcgtgccgggcggcgcgggggcggcggcggcggcggtggcggcggtcggagggttcgtcgccgtggccgcgctagccgagagggccggcgtgatcgcgccaaggaaacgccccaacgcgcccccagctgttcctggtttacccattatcggaaatctgcatcaactgaaagaaaagaagcctcatcagacctttgcaaaatgggctgaaatttacgggccaatctacactataagaaccggggcttcttccgtagttgtgctcaattcaactgaagtagccaaggaggcgatggttgcaaaattctcatccatatctacccgaaagctatccaaagcactgacagtgcttactcgtgataaatccatggttgctaccagcgactatggtgatttccacaaaatggtgaagcgttatgtcatgtcaagcatgttgggtacttctgcacagaaacaatttcgtgacacaagagatatgatgatccataacatgttaagcactttccataaactggtgaaagatgacccacatgctcctctgatattcagagatgttttcaaggatgagctattccggttgtccatgatccagagcttaggagaggatgtgagttcagtctatgtggatgaatttgggagggacatttcgaaggaagaaatctacaatgctactgtgactgacatgatgatgtgcgcaattgaggtcgactggagagatttcttcccctacctcagctgggttccaaacaagagcttcgaaacaagagtgtttactacagaaactagacgaactgcggtgatgcgcgccttgatcaagcagcagaaggaaaggattgtgcgtggagaggcaaagacatgctatctggacttcttgctggcagagaacacactgacagatgagcaactgacgatgctagtgtgggaggcactcatagaggctgcagatactaccttggtcaccacagaatgggccatgtatgagcttgccaagaaccctgacaaacaggcaagaaattttgttactctgttccagctcattgttgccattcttggcattatcaaccaaaactttttatttttggccttcttcttgttgtcatgccaggaacggctttaccaagagatccgggaggtgtgcggcgacgagacggtcaccgaggagcaccttccacggctgccgtacctcaacgccgtcttccacgagacgctgcgccgccactcccctatggtgatcaacctgtacgggtgcaacatgaacaggaaggagtgggagtcgccggaggagtgggtgccggagaggttcgccggcgggaggctcgaggtggcggacatgtacaagacgatggcgttcggcgccgggaggagggcctgcgcggggagcctgcaggcaatgcacatcgcgtgcgccgccgtcgcgcgtttcgtgcaggagttcaggtggaggctgagggagggcgacgaggagaaggtggacaccgtgcagctcaccgcctacaagctccacccgcttcatgtccacctcacgcccagaggaagggtgtga
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| Protein seq | MEAFVPGGAGAAAAAVAAVGGFVAVAALAERAGVIAPRKRPNAPPAVPGLPIIGNLHQLKEKKPHQTFAKWAEIYGPIYTIRTGASSVVVLNSTEVAKEAMVAKFSSISTRKLSKALTVLTRDKSMVATSDYGDFHKMVKRYVMSSMLGTSAQKQFRDTRDMMIHNMLSTFHKLVKDDPHAPLIFRDVFKDELFRLSMIQSLGEDVSSVYVDEFGRDISKEEIYNATVTDMMMCAIEVDWRDFFPYLSWVPNKSFETRVFTTETRRTAVMRALIKQQKERIVRGEAKTCYLDFLLAENTLTDEQLTMLVWEALIEAADTTLVTTEWAMYELAKNPDKQARNFVTLFQLIVAILGIINQNFLFLAFFLLSCQERLYQEIREVCGDETVTEEHLPRLPYLNAVFHETLRRHSPMVINLYGCNMNRKEWESPEEWVPERFAGGRLEVADMYKTMAFGAGRRACAGSLQAMHIACAAVARFVQEFRWRLREGDEEKVDTVQLTAYKLHPLHVHLTPRGRV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0570600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g37364 | RBH | 1.005090 | 1.207899 | 1.665302 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0570100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020090 | RBH | 1.112227 | 21.104042 | 8.408897 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019930 | RBH | 0.243407 | 7.011107 | 6.698956 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020030 | RBH | 1.260592 | 20.598536 | 15.683604 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019740 | RBH | 0.180146 | 0.656482 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020230 | RBH | 4.129486 | 29.858145 | 39.398830 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0347400 | RBH | 5.7947685 | 8.748556 | 4.7110725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019680 | RBH | 0.536105 | 1.355955 | 2.563977 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0321800 | RBH | 7.9898025 | 6.780112 | 6.625054 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0001670 | RBH | 0.256835 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020131 | RBH | 0.201552 | 13.715993 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019760 | RBH | 0.0 | 27.980122 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0020410 | RBH | 0.494076 | 0.579281 | 1.534145 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019900 | RBH | 0.113270 | 11.124604 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G019780 | RBH | 0.177860 | 4.460786 | 4.705906 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0019930 | SBH | 0.0 | 0.0 | 0.0 |
