Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0018560 | OGI:06055890 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:21373923-21375089 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaatcctatagcatgtaaagaattgaacaaaatctatgctaactcccctttatgattcggcatccagcttgaaacgtttcatcacatacaaatcctacatatccctgagtaaacatacataatacaactgtcacttactaattcgtgttcttgaattggtacaatagaccacacttaccgagttaaatgaattaaattttatcctctggttatgcaagacacgccagaaatctgaccgcttgtgtctgtgtaccaaaattcgttgatcaaatcacatcaccaaatttctttctttctttgccagcttctttgtgtgatatttccgactgaaattcccaatacatgatgcacgtcaacacacgaagttttcaatatcaaattagtttcattaaatgaaacattaaatatattttgataatatatttcttttgtattaaaatgctgctaaatttttctataaatttgataacttaaaaaaattttgctaagaaaaaattcaaaatgacttataatatgagatggaagtagttagtttcacatatacatcgatcatccctgatccctacttcagagttcagagttaacaagcttacttaaaccggcaactgatcagttggatcaacttgttgctgtgcaggcgccggcggtgctccggccgccagcttgcccgggtcaagctctcgccggcacagcgggcacgtccggtgagcggcgagccaccggtcgatgcagtcggcgtggtacacgtgctcgcacgccggcagccgccgcaccatctccccctcccgcaccgcgcccaggcacaccgcgcactcccgcccaacgccgctcgccgccgtcgcgccaccgtcgtcggagcttccaactacataagcgtaggccggggggagggcctccacagggaacggctcgccgccgccgctttcgccagcagcgacgacgacgaccgcgccctcgccgtcgacgtagccggagaccgcgtcgcgctccctccatctccggcagcagcagaaggcgagcgacatgagggtgaggaacgtggcgaggaagatggacaggaacacggccgacacaacgatcaacccgcgcggcggcgggccggacgccgacgccgccgccgcctgcccgccgccgccgcagcatgtctcgacgccggcgccggtcat
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| CDS seq | atgaccggcgccggcgtcgagacatgctgcggcggcggcgggcaggcggcggcggcgtcggcgtccggcccgccgccgcgcgggttgatcgttgtgtcggccgtgttcctgtccatcttcctcgccacgttcctcaccctcatgtcgctcgccttctgctgctgccggagatggagggagcgcgacgcggtctccggctacgtcgacggcgagggcgcggtcgtcgtcgtcgctgctggcgaaagcggcggcggcgagccgttccctgtggaggccctccccccggcctacgcttatgtagttggaagctccgacgacggtggcgcgacggcggcgagcggcgttgggcgggagtgcgcggtgtgcctgggcgcggtgcgggagggggagatggtgcggcggctgccggcgtgcgagcacgtgtaccacgccgactgcatcgaccggtggctcgccgctcaccggacgtgcccgctgtgccggcgagagcttgacccgggcaagctggcggccggagcaccgccggcgcctgcacagcaacaagattaa
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| Protein seq | MTGAGVETCCGGGGQAAAASASGPPPRGLIVVSAVFLSIFLATFLTLMSLAFCCCRRWRERDAVSGYVDGEGAVVVVAAGESGGGEPFPVEALPPAYAYVVGSSDDGGATAASGVGRECAVCLGAVREGEMVRRLPACEHVYHADCIDRWLAAHRTCPLCRRELDPGKLAAGAPPAPAQQQD |
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| Function | RING-H2 finger protein ATL28 [UniProtKB/Swiss-Prot:Q6NKR1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0018560 | OsLima_06g0018560.01 | Chr06 | 21373923 | 21375089 | - | NAM | ||
| CDS seq | atgaccggcgccggcgtcgagacatgctgcggcggcggcgggcaggcggcggcggcgtcggcgtccggcccgccgccgcgcgggttgatcgttgtgtcggccgtgttcctgtccatcttcctcgccacgttcctcaccctcatgtcgctcgccttctgctgctgccggagatggagggagcgcgacgcggtctccggctacgtcgacggcgagggcgcggtcgtcgtcgtcgctgctggcgaaagcggcggcggcgagccgttccctgtggaggccctccccccggcctacgcttatgtagttggaagctccgacgacggtggcgcgacggcggcgagcggcgttgggcgggagtgcgcggtgtgcctgggcgcggtgcgggagggggagatggtgcggcggctgccggcgtgcgagcacgtgtaccacgccgactgcatcgaccggtggctcgccgctcaccggacgtgcccgctgtgccggcgagagcttgacccgggcaagctggcggccggagcaccgccggcgcctgcacagcaacaagattaa
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| Protein seq | MTGAGVETCCGGGGQAAAASASGPPPRGLIVVSAVFLSIFLATFLTLMSLAFCCCRRWRERDAVSGYVDGEGAVVVVAAGESGGGEPFPVEALPPAYAYVVGSSDDGGATAASGVGRECAVCLGAVREGEMVRRLPACEHVYHADCIDRWLAAHRTCPLCRRELDPGKLAAGAPPAPAQQQD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0536100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g34530 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0536100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0018500 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0018330 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0018440 | RBH | 0.0 | 0.0 | 0.086752 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0018270 | RBH | 0.0 | 0.051324 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0018650 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0317100 | RBH | 0.0108975 | 0.663828 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0018130 | RBH | 0.0 | 0.435272 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0292400 | RBH | 0.013393 | 1.425348 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010860 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0018500 | RBH | 0.0 | 3.161607 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0018150 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018900 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0018360 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G018240 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0018380 | RBH | 0.0 | 0.000000 | 0.0 |
