Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0018040 | OGI:06008910 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:20759342-20760383 | ||||||||
| Gene Symbol | OsFbox297, Os_F0442 | ||||||||||
| DNA seq | cgccaggacgggcctgagataagaaccatccggtttgtgccagcagctcctaatgggaccattgccgaggattggagaacctttcaatttactggaagatcagttcagcggttaaaggaagagattacaagccgtgctggggaggcaacccagtactgtgttcaagcaggccggtacggacgtctgatccctttgacacatgagcttcctcacaacactgagaccattgatatcatcattatgatgactggtactacaggcgaggagtttcccttttttattttcatgttctcctcgtatttttggtgaaagaggctcgcttgaatttgttgcactgagctaggtcaatagatattattgctgctcttactttttagttgtgcatgatgtcttaagtttgattctagtcagcaaagtgttataatcttctgcttgaacagatagtccttgtctggttagaaaaatatataaaaatctcattctatagattatatgctcaaggtagtttatacagtattgaattttgttgcgcacttgcgcacattgcactgagctaggcaagtagatacagttgctctaccatccatgcatatttgttcataatattattttagttaagtgtaatcatgtgcaaacgtatgcttataaatacaggcatttctatataccagataataacaatcagtattacattgcagatccccacatggataatagcccaagaacacaactttctgctcctgagtccttgggagaacatcgtgttgctgacattcagacatcatactcgcaccgtctgcatacaaacaatgtacttgagagtcagcaacggaaaacaggtataacacgagctgaacttgaattgaaaactaggaatatccactggggagatttgaatttggaggaaaagaagaggacaagaaaggagttgaaagcagaatacaatgaactcttagctgcagaaaattgcatcagtaaatcgcaggaagatgatgtaattacaaacgaaaattatgaaagagcgtcactccgggatccatga
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| CDS seq | atgatgactgatccccacatggataatagcccaagaacacaactttctgctcctgagtccttgggagaacatcgtgttgctgacattcagacatcatactcgcaccgtctgcatacaaacaatgtacttgagagtcagcaacggaaaacaggtataacacgagctgaacttgaattgaaaactaggaatatccactggggagatttgaatttggaggaaaagaagaggacaagaaaggagttgaaagcagaatacaatgaactcttagctgcagaaaattgcatcagtaaatcgcaggaagatgatgtaattacaaacgaaaattatgaaagagcgtcactccgggatccatga |
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| Protein seq | MMTDPHMDNSPRTQLSAPESLGEHRVADIQTSYSHRLHTNNVLESQQRKTGITRAELELKTRNIHWGDLNLEEKKRTRKELKAEYNELLAAENCISKSQEDDVITNENYERASLRDP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0018040 | OsLima_06g0018040.01 | Chr06 | 20759342 | 20760383 | + | NAM | ||
| CDS seq | atgatgactgatccccacatggataatagcccaagaacacaactttctgctcctgagtccttgggagaacatcgtgttgctgacattcagacatcatactcgcaccgtctgcatacaaacaatgtacttgagagtcagcaacggaaaacaggtataacacgagctgaacttgaattgaaaactaggaatatccactggggagatttgaatttggaggaaaagaagaggacaagaaaggagttgaaagcagaatacaatgaactcttagctgcagaaaattgcatcagtaaatcgcaggaagatgatgtaattacaaacgaaaattatgaaagagcgtcactccgggatccatga
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| Protein seq | MMTDPHMDNSPRTQLSAPESLGEHRVADIQTSYSHRLHTNNVLESQQRKTGITRAELELKTRNIHWGDLNLEEKKRTRKELKAEYNELLAAENCISKSQEDDVITNENYERASLRDP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0161100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06580 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0161100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004490 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004400 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004340 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004450 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0018050 | SBH | 2.863034 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0304500 | RBH | 0 | 1.7421605 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0017550 | RBH | 0.064675 | 0.000000 | 0.235323 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0279900 | RBH | 0.152919 | 0 | 0.5559825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0017950 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0017990 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0017670 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018270 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0017730 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G017770 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0017920 | RBH | 0.0 | 0.0 | 0.0 |
