Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0017980 | OGI:06008910 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:20706220-20709867 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cgccgcgaatcgctcctcctcctcctctccggctctctctctctttcctccatccgaaacctccaaaggcaggcgagggcgagggcgagggcgagggctatcaatggagtcgcgaggcgagggcgatggcgaaggagcctcaatccggcgagggcgagggcgagtaatggggtcggagggcgagggcgagggcgaaggcgaaggcgaggaggtgaagtgggcgatgctcttcaccctcccgatcccggtcaccgacgaggagcttcctccgaccagagacctggccatgagcaagcagccgccgccgctcatctcctttctctgccttccgcagcggagcctcggcgaggccgcccactgcttcgttgagatagtctgcgcggattctgctggtcggcttctcttgagcgccaagccgcggccagcaccggccgcaaccacctctgctgctctgcctcctcgtcaaggcgtcatcatcatctgcgacgccacaaacctcaaggtcatgcgcctcccgctgccagtcggcgcgacttgtgatgacaacgagcgcgggttcccatgcctggcggtactcagcgatccgcgcgacgaggaggatggcgatgcctacatcgttgttctactccatgcggacgcgagcggagccttccaggaggttctctgctatgaatccaagaccggaggagtactcgacacacagacccatgaccaggactggagcgacacggagacccacgaccaagactggagtgagaagttgctgtcctgcaattcgcagcagccaccgaggggttggcacagacacagccacagccaccgtgcgatacctctcgatggcgaggtctgttggattgatgctgcttatggtttggtgctatgtgaagttctgttggaggatcccaggcttcggtacgtccagctcccagaaggctgcacgatggatgaagacgatgacatggggtcgcctgctgttgtagagaagcttaggagacgttgtattggtgttagtgatggcaaacttagataccttcagatagacagttcaggacagtcgattgccgtgtggaccttgatgactcttaaggatgtcacattttgggagcatacattctcagtcgatttagtatctcttcgtgctgataagagtttccaggaagcaggactgaacccacacatattcccctcagtggcaggcattcatcctatcgacactagtaccattttcttagtgcagaactcaatcatattttctgtcagctcagatacaacaacttcttctatcaaagttggtgatcaccacaagttcctgctcaacgagaatgagatcactccgagtctgtttctccttccgtggctggttcatgacccagcagacctgcttccccaagagacaccaccgagatcaagtaagcacttctagtttcccttgtgattactacagtgtcatttgataccccatcatatattgttagtttgctctctatattctgaaatgccaaattgtttttgctcctgccagcatgtttttatcttgtctgaaatgttagaatggctaatgtgggttaagtcatgttgcttgctgtttaggttattcaaagaagtgcctccccgaatatacactgtgaattgataccatgatactatattgttagtttgttctctatattctgaaatgccaaattatccctgccaacatgcttttgtcttctctcaaatgttagaattgttaatgggggttaagccatgttgcttgttgtttaggttatttaaagaagtggctcctcggatataaactgtgatttgataccatgagccatggtatattgttggtttgttctctatattctgaaatgctaaattgttcttgtacctgccatcatgcttttgtcttctctgaactgttacaattgttaatggggattaagccatgtttcttgctgtttagattgttcaaagagatggcttcgtgcccttaaactaaagcaagcactcaagagggggatcgtgtggctgagtgataaccatgaagttgtaactcacgttggagatgtaatagattttcttaccattcctgctggcggttcctttagatctgcagctatttgtgtcaagaaggttggttcctattgttcgaaaacagggaagatattgaaatttcacaattcgaggttacatgcaaatgatccggtcaaggcattgccaatggaagatttccaaatcatcaatgacgtggatgaagatgtcgagtcattgtcaatggaaggtatccacatcgtcaaaaacgtcaatgaagctagaaggtttatcaatcagtggattagccgccagcaaccacatagttgtataatggatgtggctaagtctgtgggtgtggaagagtgcattaatatcttgacgtaccttgggggtgaaaatgccacgttcatgctgatgaattccccgacattccttgagaaaaccggcaacaacttacgcaagtcttctgatttgaaggagtgggtctacctaaaagagtagcagccatttactggagacttatctgactgtataagaggaagacagatacaggagcagaacctctcatggtaaggtttccattttaccccatgtatggctggtcatctttttttttccctgacacagtttctatgcattaatagtcattcacttgtgataatcctttagtcttcagtttgtattttgtcctgcatcttttgtgacaaacttctgcatcgatttctttctaacagagcttggtactgttcttaataaagttatatccatttgtcctctaggaaactgtatagcatgtctggtttggagagacttacctgaaaactgttggaaataatggtttgttggttgccatacatactcatgccccgtccttgtggattttcaatctgtgtacatgtgctaaaatatggcctgaaggtagtttagtaattgggaataatggtttgccctggtatcgaaaatactgggtttatatcccaatccttggttgagaatgtttatgtcctggtagtagtgttgaaggatttaagcccaggtaatctcagtaatatcttttcagtctaagaaacaggttatttgttttaagataatcttgcatgctggttttcatctacaaatgtataatacacaacgctgctgacgttaaatcaagacccagcttatgatgtttttatatgagttatccattttatatttctatatatttattttcttctataacaagatgttttgttagatgatttctgatattgaacggcttacaggttgcgatatatgtacctaacttccttattgttttgtttggtcctctgcaaattcagctgcaatgtagatgcggtctagaggaagacagaactacaggagcctccacttgttcattcgtctcttcagaaatttttgttgcttctgatcgaatgacgcagaattggttgccttctttttgtaaagatagtagataggcacatgctcagaagccaaaaagaaagccgtcaacttttttgttttcctgttactatgtgttggccattatgccgtgaagtttacaaactgctgaaatttccaactaggtagaatgtgcgcctgaacaattttgtgttctgaaattaatttgctgtagtttccacggtt
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| CDS seq | atggagtcgcgaggcgagggcgatggcgaaggagcctcaatccggcgagggcgagggcgagtaatggggtcggagggcgagggcgagggcgaaggcgaaggcgaggaggtgaagtgggcgatgctcttcaccctcccgatcccggtcaccgacgaggagcttcctccgaccagagacctggccatgagcaagcagccgccgccgctcatctcctttctctgccttccgcagcggagcctcggcgaggccgcccactgcttcgttgagatagtctgcgcggattctgctggtcggcttctcttgagcgccaagccgcggccagcaccggccgcaaccacctctgctgctctgcctcctcgtcaaggcgtcatcatcatctgcgacgccacaaacctcaaggtcatgcgcctcccgctgccagtcggcgcgacttgtgatgacaacgagcgcgggttcccatgcctggcggtactcagcgatccgcgcgacgaggaggatggcgatgcctacatcgttgttctactccatgcggacgcgagcggagccttccaggaggttctctgctatgaatccaagaccggaggagtactcgacacacagacccatgaccaggactggagcgacacggagacccacgaccaagactggagtgagaagttgctgtcctgcaattcgcagcagccaccgaggggttggcacagacacagccacagccaccgtgcgatacctctcgatggcgaggtctgttggattgatgctgcttatggtttggtgctatgtgaagttctgttggaggatcccaggcttcggtacgtccagctcccagaaggctgcacgatggatgaagacgatgacatggggtcgcctgctgttgtagagaagcttaggagacgttgtattggtgttagtgatggcaaacttagataccttcagatagacagttcaggacagtcgattgccgtgtggaccttgatgactcttaaggatgtcacattttgggagcatacattctcagtcgatttagtatctcttcgtgctgataagagtttccaggaagcaggactgaacccacacatattcccctcagtggcaggcattcatcctatcgacactagtaccattttcttagtgcagaactcaatcatattttctgtcagctcagatacaacaacttcttctatcaaagttggtgatcaccacaagttcctgctcaacgagaatgagatcactccgagtctgtttctccttccgtggctggttcatgacccagcagacctgcttccccaagagacaccaccgagatcaaattgttcaaagagatggcttcgtgcccttaaactaaagcaagcactcaagagggggatcgtgtggctgagtgataaccatgaagttgtaactcacgttggagatgtaatagattttcttaccattcctgctggcggttcctttagatctgcagctatttgtgtcaagaaggttggttcctattgttcgaaaacagggaagatattgaaatttcacaattcgaggttacatgcaaatgatccggtcaaggcattgccaatggaagatttccaaatcatcaatgacgtggatgaagatgtcgagtcattgtcaatggaaggtatccacatcgtcaaaaacgtcaatgaagctagaaggtttatcaatcagtggattagccgccagcaaccacatagttgtataatggatgtggctaagtctgtgggtgtggaagagtgcattaatatcttgacgtaccttgggggtgaaaatgccacgttcatgctgatgaattccccgacattccttgagaaaaccggcaacaacttacgcaagtcttctgatttgaaggagtgggtctacctaaaagagtag
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| Protein seq | MESRGEGDGEGASIRRGRGRVMGSEGEGEGEGEGEEVKWAMLFTLPIPVTDEELPPTRDLAMSKQPPPLISFLCLPQRSLGEAAHCFVEIVCADSAGRLLLSAKPRPAPAATTSAALPPRQGVIIICDATNLKVMRLPLPVGATCDDNERGFPCLAVLSDPRDEEDGDAYIVVLLHADASGAFQEVLCYESKTGGVLDTQTHDQDWSDTETHDQDWSEKLLSCNSQQPPRGWHRHSHSHRAIPLDGEVCWIDAAYGLVLCEVLLEDPRLRYVQLPEGCTMDEDDDMGSPAVVEKLRRRCIGVSDGKLRYLQIDSSGQSIAVWTLMTLKDVTFWEHTFSVDLVSLRADKSFQEAGLNPHIFPSVAGIHPIDTSTIFLVQNSIIFSVSSDTTTSSIKVGDHHKFLLNENEITPSLFLLPWLVHDPADLLPQETPPRSNCSKRWLRALKLKQALKRGIVWLSDNHEVVTHVGDVIDFLTIPAGGSFRSAAICVKKVGSYCSKTGKILKFHNSRLHANDPVKALPMEDFQIINDVDEDVESLSMEGIHIVKNVNEARRFINQWISRQQPHSCIMDVAKSVGVEECINILTYLGGENATFMLMNSPTFLEKTGNNLRKSSDLKEWVYLKE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0017980 | OsLima_06g0017980.01 | Chr06 | 20706220 | 20709867 | + | NAM | ||
| CDS seq | atggagtcgcgaggcgagggcgatggcgaaggagcctcaatccggcgagggcgagggcgagtaatggggtcggagggcgagggcgagggcgaaggcgaaggcgaggaggtgaagtgggcgatgctcttcaccctcccgatcccggtcaccgacgaggagcttcctccgaccagagacctggccatgagcaagcagccgccgccgctcatctcctttctctgccttccgcagcggagcctcggcgaggccgcccactgcttcgttgagatagtctgcgcggattctgctggtcggcttctcttgagcgccaagccgcggccagcaccggccgcaaccacctctgctgctctgcctcctcgtcaaggcgtcatcatcatctgcgacgccacaaacctcaaggtcatgcgcctcccgctgccagtcggcgcgacttgtgatgacaacgagcgcgggttcccatgcctggcggtactcagcgatccgcgcgacgaggaggatggcgatgcctacatcgttgttctactccatgcggacgcgagcggagccttccaggaggttctctgctatgaatccaagaccggaggagtactcgacacacagacccatgaccaggactggagcgacacggagacccacgaccaagactggagtgagaagttgctgtcctgcaattcgcagcagccaccgaggggttggcacagacacagccacagccaccgtgcgatacctctcgatggcgaggtctgttggattgatgctgcttatggtttggtgctatgtgaagttctgttggaggatcccaggcttcggtacgtccagctcccagaaggctgcacgatggatgaagacgatgacatggggtcgcctgctgttgtagagaagcttaggagacgttgtattggtgttagtgatggcaaacttagataccttcagatagacagttcaggacagtcgattgccgtgtggaccttgatgactcttaaggatgtcacattttgggagcatacattctcagtcgatttagtatctcttcgtgctgataagagtttccaggaagcaggactgaacccacacatattcccctcagtggcaggcattcatcctatcgacactagtaccattttcttagtgcagaactcaatcatattttctgtcagctcagatacaacaacttcttctatcaaagttggtgatcaccacaagttcctgctcaacgagaatgagatcactccgagtctgtttctccttccgtggctggttcatgacccagcagacctgcttccccaagagacaccaccgagatcaaattgttcaaagagatggcttcgtgcccttaaactaaagcaagcactcaagagggggatcgtgtggctgagtgataaccatgaagttgtaactcacgttggagatgtaatagattttcttaccattcctgctggcggttcctttagatctgcagctatttgtgtcaagaaggttggttcctattgttcgaaaacagggaagatattgaaatttcacaattcgaggttacatgcaaatgatccggtcaaggcattgccaatggaagatttccaaatcatcaatgacgtggatgaagatgtcgagtcattgtcaatggaaggtatccacatcgtcaaaaacgtcaatgaagctagaaggtttatcaatcagtggattagccgccagcaaccacatagttgtataatggatgtggctaagtctgtgggtgtggaagagtgcattaatatcttgacgtaccttgggggtgaaaatgccacgttcatgctgatgaattccccgacattccttgagaaaaccggcaacaacttacgcaagtcttctgatttgaaggagtgggtctacctaaaagagtag
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| Protein seq | MESRGEGDGEGASIRRGRGRVMGSEGEGEGEGEGEEVKWAMLFTLPIPVTDEELPPTRDLAMSKQPPPLISFLCLPQRSLGEAAHCFVEIVCADSAGRLLLSAKPRPAPAATTSAALPPRQGVIIICDATNLKVMRLPLPVGATCDDNERGFPCLAVLSDPRDEEDGDAYIVVLLHADASGAFQEVLCYESKTGGVLDTQTHDQDWSDTETHDQDWSEKLLSCNSQQPPRGWHRHSHSHRAIPLDGEVCWIDAAYGLVLCEVLLEDPRLRYVQLPEGCTMDEDDDMGSPAVVEKLRRRCIGVSDGKLRYLQIDSSGQSIAVWTLMTLKDVTFWEHTFSVDLVSLRADKSFQEAGLNPHIFPSVAGIHPIDTSTIFLVQNSIIFSVSSDTTTSSIKVGDHHKFLLNENEITPSLFLLPWLVHDPADLLPQETPPRSNCSKRWLRALKLKQALKRGIVWLSDNHEVVTHVGDVIDFLTIPAGGSFRSAAICVKKVGSYCSKTGKILKFHNSRLHANDPVKALPMEDFQIINDVDEDVESLSMEGIHIVKNVNEARRFINQWISRQQPHSCIMDVAKSVGVEECINILTYLGGENATFMLMNSPTFLEKTGNNLRKSSDLKEWVYLKE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.035163 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0161400 | SBH | 0.105280 | 0.0 | 0.771096 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06610 | SBH | 0.069752 | 0.0 | 0.194470 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0161400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004520 | SBH | 0.0 | 1.440797 | 0.807565 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0012620 | SBH | 0.0 | 0.0 | 0.312114 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004370 | SBH | 0.0 | 0.0 | 1.965323 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012740 | SBH | 0.033528 | 0.043947 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0018080 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0304700 | RBH | 0.4113065 | 0.5745055 | 1.8386085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0017570 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0279200 | RBH | 0.0157845 | 0.0132725 | 0.577894 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004510 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0017940 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0017620 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018300 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0017760 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G017720 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0017890 | RBH | 0.0 | 0.000000 | 1.537076 |
