Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0017580 | OGI:06051660 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:20198775-20200792 | ||||||||
| Gene Symbol | SCP35, OsSCP35, - | ||||||||||
| DNA seq | atgggttctcatcatcgccccaccgcagggcaatgcagcctcgtgcagccaccgcgcctcatcacctgccttctcctactgcttcttcttctgcttctgtcgtcgccactgacgctcccgtgctcggcgtcgtcggcggtgatcactcacctcccgggcttccatggccgcctgccattctacctcgagactgggtaagcactactcaccgagagtcccattttcttctacatactactactatacgagcataaactcatcacatagaattgggtacatatgcacgtacatgtgtaatgtatacacaataggtacattggtgttgaggagaagactggcactgagctcttctactacttcgttgaatcagagagaaaccctgacacagaccctttggtactgtggctagtgggtgggccccgttgttcgggcttctgtggcgttgtctacgaagaaggttagcagtccattaatcaccccaaacttttttatttaagaaaataattattcacccaaactaaatccaatgttctagtccaaagggactgttgtggtgaatattaattattcatacatctttttgttacgcatataaatactaaatatccattggtgatgattttttacaggtcctttgaattttttattggaaacttacaatggtagttcgccaagattggtttataatcagtactcatggacacaggtgatatatatcctactccgaaaccctcatgaacttcctttcaaccttgtttttacttagtaatttgtgattcaaatttactgttatcagatggcaagcataattttcttggatagtcctgtcggttctggtttctcatatgcgcgtgatcccaacggttatgatgttggggatatatcatcttctttacaagtggttacatttatgaaggaggtaataaatttagaagcatattacataccctagtatagtaagaatggaaaaaactctatgcctttgtgttctagtttattacttaattatcatcttgtgcatactaatgtagtggctcaatgatcacccacgctattgctcacataatttctatgttgggggagcctcatatgctggaaaggtggttccagttatcacgcaatacatttcagaaggtaatcagtgatacacttcacatactctaaaatgaattagatgataaactaattggcagttataaccatatgttttagaacctctgtcgtgttctttcaaatatgtataaaattgttctttaaaagttcaaactaatctcagaagtcaaattatgccgcatgggagtgacaagactcaccatatttttaactgttcaacttgtttacatgccaatgaatgatcgtggtacatttttttagctagtttcttaccttgtcttattttcttcctactcaccagcaattgatgaacaaaggcaacgaccatggatcgaccttaaggcatgccattttatatctctcaaacagtttataaaaatttcgataatgtggcttcatgtctcttactatttcttgtgcctgaatacgaaatcagttacagggatatatagttggcaaccccattacaggttcaaaatttgataaaaatttccatgttccctattctcatggcgttggaatcatatctgatcaattgtacgaggtaacttcatatctaaacactcaatttcagtggggtaacactactgcataacatttcctatttctctttgaaggcagcggtaacacattgcaaaggagattttgtgaacccaacaaaccaattgtgtgctaatgtcttgtctactattcataaagtaaggttattgcactgtactaatttctatgtttactaatattcatctagtattatcttactgcacaaatcccatgtgtagctcatgtctgaagtttcggatggaaatatcttagaggataaatgtgttaaagctgcaccaaaacccacaatagatgtttcagcaagcagggcactgctggaagaatacaataaactccatcgttaa
More
|
||||||||||
| CDS seq | atgggttctcatcatcgccccaccgcagggcaatgcagcctcgtgcagccaccgcgcctcatcacctgccttctcctactgcttcttcttctgcttctgtcgtcgccactgacgctcccgtgctcggcgtcgtcggcggtgatcactcacctcccgggcttccatggccgcctgccattctacctcgagactggttcgccaagattggtttataatcagtactcatggacacagatggcaagcataattttcttggatagtcctgtcggttctggtttctcatatgcgcgtgatcccaacggttatgatgttggggatatatcatcttctttacaagtggttacatttatgaaggagtggctcaatgatcacccacgctattgctcacataatttctatgttgggggagcctcatatgctggaaaggtggttccagttatcacgcaatacatttcagaaggttcaaaatttgataaaaatttccatgttccctattctcatggcgttggaatcatatctgatcaattgtacgaggcagcggtaacacattgcaaaggagattttgtgaacccaacaaaccaattgtgtgctaatgtcttgtctactattcataaactcatgtctgaagtttcggatggaaatatcttagaggataaatgtgttaaagctgcaccaaaacccacaatagatgtttcagcaagcagggcactgctggaagaatacaataaactccatcgttaa
More
|
||||||||||
| Protein seq | MGSHHRPTAGQCSLVQPPRLITCLLLLLLLLLLSSPLTLPCSASSAVITHLPGFHGRLPFYLETGSPRLVYNQYSWTQMASIIFLDSPVGSGFSYARDPNGYDVGDISSSLQVVTFMKEWLNDHPRYCSHNFYVGGASYAGKVVPVITQYISEGSKFDKNFHVPYSHGVGIISDQLYEAAVTHCKGDFVNPTNQLCANVLSTIHKLMSEVSDGNILEDKCVKAAPKPTIDVSASRALLEEYNKLHR |
||||||||||
| Function | Serine carboxypeptidase-like 15 [UniProtKB/Swiss-Prot:Q9C7D2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0017580 | OsLima_06g0017580.01 | Chr06 | 20198775 | 20200792 | + | NAM | ||
| CDS seq | atgggttctcatcatcgccccaccgcagggcaatgcagcctcgtgcagccaccgcgcctcatcacctgccttctcctactgcttcttcttctgcttctgtcgtcgccactgacgctcccgtgctcggcgtcgtcggcggtgatcactcacctcccgggcttccatggccgcctgccattctacctcgagactggttcgccaagattggtttataatcagtactcatggacacagatggcaagcataattttcttggatagtcctgtcggttctggtttctcatatgcgcgtgatcccaacggttatgatgttggggatatatcatcttctttacaagtggttacatttatgaaggagtggctcaatgatcacccacgctattgctcacataatttctatgttgggggagcctcatatgctggaaaggtggttccagttatcacgcaatacatttcagaaggttcaaaatttgataaaaatttccatgttccctattctcatggcgttggaatcatatctgatcaattgtacgaggcagcggtaacacattgcaaaggagattttgtgaacccaacaaaccaattgtgtgctaatgtcttgtctactattcataaactcatgtctgaagtttcggatggaaatatcttagaggataaatgtgttaaagctgcaccaaaacccacaatagatgtttcagcaagcagggcactgctggaagaatacaataaactccatcgttaa
More
|
|||||||
| Protein seq | MGSHHRPTAGQCSLVQPPRLITCLLLLLLLLLLSSPLTLPCSASSAVITHLPGFHGRLPFYLETGSPRLVYNQYSWTQMASIIFLDSPVGSGFSYARDPNGYDVGDISSSLQVVTFMKEWLNDHPRYCSHNFYVGGASYAGKVVPVITQYISEGSKFDKNFHVPYSHGVGIISDQLYEAAVTHCKGDFVNPTNQLCANVLSTIHKLMSEVSDGNILEDKCVKAAPKPTIDVSASRALLEEYNKLHR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0519700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g32780 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0519700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0017710 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0017540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0017640 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0017550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0017700 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0295200 | RBH | 0.005514 | 0 | 0.17586 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0017230 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0269700 | RBH | 0 | 0 | 0.0531835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0033390 | RBH | 0.059732 | 0.035467 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0017520 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0017210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0017920 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0017350 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G017350 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0017540 | RBH | 0.0 | 0.0 | 0.0 |
