Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0016520 | OGI:06047280 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:18572841-18574601 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggacttggctataatgaggagcagtactcaataagtatacaagctgatcggtttgattttggagctcatggaccacattatttccagctaattccaatttatgaagaaagaggatggcatatgatatttgaaaagacaaggacacgtataagttggcagaccgtggagctatatgtgaactgcacaccgacccaagtaggattgagccaagttaacagcacattccatgttagagaatcaagcaggctactgaatgattttggtgtttgtttggagcaaagtgcaatacatacatcagctcatgttgcccctcatgttattttctttttgaacgactcgcacgagacggtgcgaagttctattgatagagcatgaaaaaattacaagattacaaccctagagggtcgtaaccaagaaaaaagaaaaaatataccaccaatcacacaccgacagcgccaacacataagcccgggagaaggctagcaccggaccgatcgcctctaagcgtgactgaccgccgctagaacaacaatccaccaccactcaacctctgccgccatgtgggatcactgcaccggcgcccccccgccggtcagccttcgtgcgccaaagaccgcccacgtccaccgccaaaggtcgcctcctccaccgccggccgcgtctctcgcgccaagcgggcctcctccaccggacgcgcctctcgtgccaatccgacctccctccatcggctgcgcctctcgcgccaagctggcctccatctccgccgctcgcgccgagccggcctccgttgccatcggctgcgcttctctgcgctaagccggcctccgacccctcctccaaacactgccgtgccggccggatgcggccgtctgccacgcccccggctagccgtccgagattgccatgcctccccataccgtggtgacggtcgccaccagcacagccactgctgcccttccatccccgccgccatctcaccatcctctcgacctttctcgccgtcgtcgagctccgatggcacacggcgcagaccgcccaccgtggtagcccgtgccgccatcgccgcgacaaccagactccttcggcgttgcttccgccaccggcgcggccaggttcgcctcaccgacgccatcccctcgccacctccgtcgccaccatagcagccgctgctgcccttccatccccgccgccatctcgtcatcctcccacaccttgtcgccgtcgtcgagctccgacgacacacggcgcaggcggaccgccgtggtagcctgcatcgccgtcgctgtgaactcgtcgccaccactgtcgcgaccgccagacctccgggcgctggatccgccgccggcgcggccaggttcacctcaccgacgccatcccctcgccgccctcgccatccccgccaccagacgccgccgtcggccgccgtcccgccagatccaggcgcggatctggcggtttcctctgccgccgccaacgcttcgacgccgctgccaccaccaccaaacaccgtcgccgcaccgctcagccccgccgccggctgctccaccgccagatccggccggcggcatggatctggccagttccgccgcccccgagcaggtccccctcccatgcccgagcgcgaggatgaagccccgccgccgccgtccttgtggccgggcagcggcgaggccaaggaggagggaaggggagacgagcgccggtgaggtcgtcgcctcccggtcgcccgtggtggagggacacgagaggaaacgtttttaa
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| CDS seq | atgatatttgaaaagacaaggacacgtataagttggcagaccgtggagctatatgtgaactgcacaccgacccaagtaggattgagccaagttaacagcacattccatcccgtgccgccatcgccgcgacaaccagactccttcggcgttgcttccgccaccggcgcggccaggttcgcctcaccgacgccatcccctcgccacctccgtcgccaccatagcagccgctgctgcccttccatccccgccgccatctcgtcatcctcccacaccttgtcgccgtcgtcgagctccgacgacacacggcgcaggcggaccgccgtggtagcctgcatcgccgtcgctgtgaactcgtcgccaccactgtcgcgaccgccagacctccgggcgctggatccgccgccggcgcggccaggttcacctcaccgacgccatcccctcgccgccctcgccatccccgccaccagacgccgccgtcggccgccgtcccgccagatccaggcgcggatctggcggtttcctctgccgccgccaacgcttcgacgccgctgccaccaccaccaaacaccgtcgccgcaccgctcagccccgccgccggctgctccaccgccagatccggccggcggcatggatctggccagttccgccgcccccgagcaggtccccctcccatgcccgagcgcgaggatgaagccccgccgccgccgtccttgtggccgggcagcggcgaggccaaggaggagggaaggggagacgagcgccggtgaggtcgtcgcctcccggtcgcccgtggtggagggacacgagaggaaacgtttttaa
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| Protein seq | MIFEKTRTRISWQTVELYVNCTPTQVGLSQVNSTFHPVPPSPRQPDSFGVASATGAARFASPTPSPRHLRRHHSSRCCPSIPAAISSSSHTLSPSSSSDDTRRRRTAVVACIAVAVNSSPPLSRPPDLRALDPPPARPGSPHRRHPLAALAIPATRRRRRPPSRQIQARIWRFPLPPPTLRRRCHHHQTPSPHRSAPPPAAPPPDPAGGMDLASSAAPEQVPLPCPSARMKPRRRRPCGRAAARPRRREGETSAGEVVASRSPVVEGHERKRF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0016520 | OsLima_06g0016520.01 | Chr06 | 18572841 | 18574601 | + | NAM | ||
| CDS seq | atgatatttgaaaagacaaggacacgtataagttggcagaccgtggagctatatgtgaactgcacaccgacccaagtaggattgagccaagttaacagcacattccatcccgtgccgccatcgccgcgacaaccagactccttcggcgttgcttccgccaccggcgcggccaggttcgcctcaccgacgccatcccctcgccacctccgtcgccaccatagcagccgctgctgcccttccatccccgccgccatctcgtcatcctcccacaccttgtcgccgtcgtcgagctccgacgacacacggcgcaggcggaccgccgtggtagcctgcatcgccgtcgctgtgaactcgtcgccaccactgtcgcgaccgccagacctccgggcgctggatccgccgccggcgcggccaggttcacctcaccgacgccatcccctcgccgccctcgccatccccgccaccagacgccgccgtcggccgccgtcccgccagatccaggcgcggatctggcggtttcctctgccgccgccaacgcttcgacgccgctgccaccaccaccaaacaccgtcgccgcaccgctcagccccgccgccggctgctccaccgccagatccggccggcggcatggatctggccagttccgccgcccccgagcaggtccccctcccatgcccgagcgcgaggatgaagccccgccgccgccgtccttgtggccgggcagcggcgaggccaaggaggagggaaggggagacgagcgccggtgaggtcgtcgcctcccggtcgcccgtggtggagggacacgagaggaaacgtttttaa
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| Protein seq | MIFEKTRTRISWQTVELYVNCTPTQVGLSQVNSTFHPVPPSPRQPDSFGVASATGAARFASPTPSPRHLRRHHSSRCCPSIPAAISSSSHTLSPSSSSDDTRRRRTAVVACIAVAVNSSPPLSRPPDLRALDPPPARPGSPHRRHPLAALAIPATRRRRRPPSRQIQARIWRFPLPPPTLRRRCHHHQTPSPHRSAPPPAAPPPDPAGGMDLASSAAPEQVPLPCPSARMKPRRRRPCGRAAARPRRREGETSAGEVVASRSPVVEGHERKRF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0016120 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0016400 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0016060 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0016540 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0016680 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0268900 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0016150 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0246300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0016500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0016860 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0016310 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G016310 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0016510 | RBH | 0.0 | 0.0 | 0.0 |
