Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0015890 | OGI:06045280 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:17449771-17451988 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaacaattcgtacgtgcactccacaaagtgagccttccataaatccacccttaccatttaattaggcacatattcttccatcaatcaagatcgaattgatctgccatggcatcaaacaagcaaattgatctcgagtcccagaagccggcgacgtcatctccggcggccagcgtttcatcggcagcagctgccaccgcgctgccagcttctagctcggctgtacccgtttcagttggcataaccaaccgccacaacgtgcagccagagacggagcctctgctgctgctggcgggcggcgacggcgatggcggctctgacgacgagacaacgcggctggagcggaccatcacgcgggcgttccggagcacggcggagctcgccaagcacctgcccacgggcgcggtgctcgtcttcgaggtgctgtccccggtgttcaccaacggcggcaagtgccaggacgtcaaccgcgtcatgacggcgtggctggtggggctctgcgccgcggcgtgcttcttcctctgcttcacggacagcttccacgacgggaaagggacggtgcggtacgtggtggccacgcgcgccggcctgtgggtcatcgacggcaccgcgccgccgccgccggacgtggccgcgacctaccgcctcaggttcatcgacttcttccacgccgtgctgtccctgatcgtcttcctgtccgtcgccatgttcgatcacaacgtcggcgcctgcttctacccggtgatgtcctacgacacgaggcaggtgctcaccgacgtgccgctcgccggagggctcgtcggaaccatgctgttcgcgacgttcccgtcgacgcggcacgggatcggtttcccggcacacgtggcttaataagaccgactcacgtggatgttttcctttccagcagctgcctcctgtcttgtaaagttgtcttgtaaagttgtacaattgacgtataaactctgtcttatattcattaacattaatatgaatgtgaaaaatgctagaatgacttacattataaaacgaagggagtaatagatttaacgattcaaaattacgtgaaacttacatacaagttacactgtagttacatgcaagttacagtgtaattacactacaattgtactataattacatctgttaaatttttaggagaaaatttgtcaacaaatgtataggtggtcccatttattacatgtaattgattaatgaatgctagaacaggtctcctaggtgacccccactttcctagtgaagattcctaggtggcccccactttcctagtgaagatttgttaggaacccaattgaacggcctgtaggctgtcagctactctcaaagctaggcccaagcaagcaaagggagagcactattaagcagcaggagcagcaccagaaaagggatgtttgatcaattggcgtgctgaggctcacggaggcggtggcggcgacctaggtgaccggtagcaacccttgtcgatcttcttctctttctccttctcgtctaggggtggcttggctcatttgagctcgttgtgttaacgagccaactcggtttgttaaggcttggctcagttgagctagttgtgttaacgagtcgggctcgttaatgttagcgagctaaaaggctagctcgcctcggttcacgagctggctcgtaagctcgttaggcttgttaatgagctatatctcattaatatcatattaataatttcaaatttaacattttattatgtattaacgtaataataaacactaactaatataatactcactaaatatgaatagatttgatgtaactaaaagactaagcaccagtaaagaaacactaagttcattaagatatggtgatattttatactaacgagctaaacgagcagctcacgagctacctcgttaagctcacaagctaaaaggctagctcgactcgactcgttaagactacgatttcgaatggatccgagctgagcttgctacgagccgatccgagccacgagtttcgagcttttttgtccacccctattctcgttccacctatttgctagcgacttgtctcccctttttcctttttgtttcaccaaaatactggagtgttgaaacatatatggttgttgtttgaatcgaagcgaagggttgttaacaatatgatatccgacccacgtggatgttttcctttccagcagctgcctcctgtcttgcgtgctttgcatctcctag
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| CDS seq | atggcatcaaacaagcaaattgatctcgagtcccagaagccggcgacgtcatctccggcggccagcgtttcatcggcagcagctgccaccgcgctgccagcttctagctcggctgtacccgtttcagttggcataaccaaccgccacaacgtgcagccagagacggagcctctgctgctgctggcgggcggcgacggcgatggcggctctgacgacgagacaacgcggctggagcggaccatcacgcgggcgttccggagcacggcggagctcgccaagcacctgcccacgggcgcggtgctcgtcttcgaggtgctgtccccggtgttcaccaacggcggcaagtgccaggacgtcaaccgcgtcatgacggcgtggctggtggggctctgcgccgcggcgtgcttcttcctctgcttcacggacagcttccacgacgggaaagggacggtgcggtacgtggtggccacgcgcgccggcctgtgggtcatcgacggcaccgcgccgccgccgccggacgtggccgcgacctaccgcctcaggttcatcgacttcttccacgccgtgctgtccctgatcgtcttcctgtccgtcgccatgttcgatcacaacgtcggcgcctgcttctacccggtgatgtcctacgacacgaggcaggtgctcaccgacgtgccgctcgccggagggctcgtcggaaccatgctgttcgcgaccagctgcctcctgtcttgcgtgctttgcatctcctag
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| Protein seq | MASNKQIDLESQKPATSSPAASVSSAAAATALPASSSAVPVSVGITNRHNVQPETEPLLLLAGGDGDGGSDDETTRLERTITRAFRSTAELAKHLPTGAVLVFEVLSPVFTNGGKCQDVNRVMTAWLVGLCAAACFFLCFTDSFHDGKGTVRYVVATRAGLWVIDGTAPPPPDVAATYRLRFIDFFHAVLSLIVFLSVAMFDHNVGACFYPVMSYDTRQVLTDVPLAGGLVGTMLFATSCLLSCVLCIS |
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| Function | Protein DMP4 [UniProtKB/Swiss-Prot:Q8L928] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0015890 | OsLima_06g0015890.01 | Chr06 | 17449771 | 17451988 | + | NAM | ||
| CDS seq | atggcatcaaacaagcaaattgatctcgagtcccagaagccggcgacgtcatctccggcggccagcgtttcatcggcagcagctgccaccgcgctgccagcttctagctcggctgtacccgtttcagttggcataaccaaccgccacaacgtgcagccagagacggagcctctgctgctgctggcgggcggcgacggcgatggcggctctgacgacgagacaacgcggctggagcggaccatcacgcgggcgttccggagcacggcggagctcgccaagcacctgcccacgggcgcggtgctcgtcttcgaggtgctgtccccggtgttcaccaacggcggcaagtgccaggacgtcaaccgcgtcatgacggcgtggctggtggggctctgcgccgcggcgtgcttcttcctctgcttcacggacagcttccacgacgggaaagggacggtgcggtacgtggtggccacgcgcgccggcctgtgggtcatcgacggcaccgcgccgccgccgccggacgtggccgcgacctaccgcctcaggttcatcgacttcttccacgccgtgctgtccctgatcgtcttcctgtccgtcgccatgttcgatcacaacgtcggcgcctgcttctacccggtgatgtcctacgacacgaggcaggtgctcaccgacgtgccgctcgccggagggctcgtcggaaccatgctgttcgcgaccagctgcctcctgtcttgcgtgctttgcatctcctag
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| Protein seq | MASNKQIDLESQKPATSSPAASVSSAAAATALPASSSAVPVSVGITNRHNVQPETEPLLLLAGGDGDGGSDDETTRLERTITRAFRSTAELAKHLPTGAVLVFEVLSPVFTNGGKCQDVNRVMTAWLVGLCAAACFFLCFTDSFHDGKGTVRYVVATRAGLWVIDGTAPPPPDVAATYRLRFIDFFHAVLSLIVFLSVAMFDHNVGACFYPVMSYDTRQVLTDVPLAGGLVGTMLFATSCLLSCVLCIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0352200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g24490 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0352200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0015970 | RBH | 0.0 | 5.019525 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0015900 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0015910 | RBH | 0.0 | 0.875005 | 0.817410 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0015930 | RBH | 0.0 | 0.196360 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0016060 | RBH | 1.018322 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0015560 | RBH | 0.0 | 0.439586 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0015860 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0015560 | RBH | 0.0 | 7.343448 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0016240 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0015680 | RBH | 0.0 | 2.934130 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G015680 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0015890 | RBH | 0.0 | 8.492057 | 0.0 |
