Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0015120 | OGI:06040780 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:15276578-15280883 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatagaagaaccagcgctactctgtgaactgaatgcatatattgatcccaaaatcaaggtgcttctcaaatttacaaatccctctcaatttaattgctcccatatgcattcagcagctcaagctaagacctaacaaatagagtaatatcctagcattaatgcactaaccaatctctatcacaaagaagaacagaagaaagaaaacaaacaaacaaacgaacaaaaaaagaaaaacaagagtgaccggccatcaagcaacaagagatggagagagcgagatcctttcaagggcatttgacattcctgccggggccgccgtagtagaagtagctgccccagtaggagttggagcctccctggatgtcgtagcaggcagggtggtcggcgaggagcttgaggttggccgccgggatgaggctgttgtcccagtccaccacctgcaggttgcggaagtaggcggcgcggtcgaacccctcgccggggaagtgaccgctccccatctgcgtcgccgtgtgcgaccccgacggccgcgtgttcaccacctcgccgccaaactgcaccatgttgccgtggtgcgccaggtgggtgaacagatacgatggccaataccccaccaccatacccgggcccagctctaaccaccagtgcccatgcttggggtcctgaaaaaataatacttttttttttcaaatgtgattacattttcgacctcttcacgacaaactatataccccctccatcctataatataaagaattttaggtgaatatgacaaatcctaacacaaatatccatattcattgtactgggatgtgtcacatctatctaaaatcatttatattatgggacgaatggaacatatgtgccctagtgaaactgaaaaggattggtgcagaaatcatttttgttgaagttagctgcttcagtataccaaaattcttgcatatgctagtgcagttatcaagaaatggataaaagagttaccttccatagcatcagggtaatgtcaaactgccttccgttgtacaccgattctggcgtgatagccgcgccgatcgcgatcttgttggtcgtttggacaaatccacggcagttgtggttgtagcaaccggtctcttgatatgcgtcggtctgaaaattgtatgtacaaattacttcaaattctaccttgaaaaacacaaaattttttgtgacagtttgtagcagccacacttactgtccaatatgtgaagaaccttgggttactgtctccatacagctcggggctgacctgcagaaggagcaaaagaaaaataaattacaagtgctcgttcaaaatagtacatataattattcatcactttttgtttaagatggcagaatctaattcctccgttcatgtacctgccatccagcttcaatggtgttcagatcattgccgaaggagccagagataacccagatctgtgacaggctgaactcagatgggtcacctatccttggtgaccacacattaacactagctttggccccatagtaattatcattgttcacatatccaactgcatgctgtaattaaccagagcagaagcatgttaaaaagttgatttcaaccggtgttcagtttagatttgaccagattggcagctccaatctttgtcttagggagactacttagtaagttagtagggccattaaatgctgtccatataagacaaaacaagaaaaattttaatttgatggttgggtcaaacagtccatgcttcaagaggagttgatttgctcatctggattagcttaatgaagcttctgcacatgtacaaatattagtatttttctttctccgaaccacatgggttttcttgctatgttttctcttgagcatctcttccccagagattaattaagcttcttggtgaactcactcgacgtactacggactaattagttaaagcgagaatcttttccatccaacaaactctactgttgatcgaattttcttatgcaattcaacaaacgtcaagctcttgagttaaacacagatactcgcataatctataaacaaaatgaaatgagcatttcacttcaagtgtccacttaactatcttggccacaaaatcacacgacagattggttactgaaatgaaaacagagggagccttcttggtcctgacaatgagtcgaaatttttcaggaagtcatcgcaacacggatgctaattactgaattacataagacattgcttgagcactatttcctaagagcatcgtgtttagcaatttcactattgacaacaaaaatgtttgtttgattgtaataatagtaactagggaagtcaaatagctagccttgtaacaggccaattaaccgaaccttcagtagcttagctgcacagggaagtgattacttaatgttatgtaaacgcatggttctttggaattacttggcttctctgtttaaattataggcctctatatgaatttgctctagaaatgcgagaactttgtcattgacctagcagcaagcatcgatgcctgacatgtagagatcttacttaaaccaccgattatggaaactactctttattactcaaaacccaagatgagatgcacatgctgccacttaaacctgtagtgatagacacctaaacaggagtctaaccactgcactgacacgaatatttcattggtcaggttgtgcggtcaagcagagtagatctgtactgtagcatgccacttgggtctaagaaattttcggcctacagatatgaacaaaaccgagcattgatcctagtagcaaagtaaaattttctcatatggatttttcccaagtgaagcttctgcagattcatgcaggttgctatcttattccgactgcatgggcttctcttttgtatgttttcaagtttggcactttagttagtaattaatccctgcagggagtaacttctatgtgttccttgcattttttttacaagacaacttggaaagatttgggttcacaatgatattgatccctgcaggcttttttttttttttcatcctgggacgacttggtttatttgtcttcaggatttgcagtagtgtaaccatatcgatgtgcactttcttttcttttcttttttttttaaaaaataattttaggaattaaaactcgaagtcattagttagtgacttgtgaaaaaaaattagctgctttaaatgaagagcttttactttcacagtgttacactgttactcatcctgaaaattttcctttgtcaagaagcgaggagacagtaatgtgcaaggctaacctcatggccgttgctggtggaatcacggcgaatattccagcgtgccggcttcctgccgtacctccggagggagctggccctgagcaggtccttctccgtcgtccggcgtatcgccaccgtcccttccgggcactcctcgccggcggcatgccaggcctgcaccaccacctcacctactctactgctgctgctgctgctgacggcaatggtgaggttgtagttcttgggcctctccggtgggtcctgcgaaagaacacaagttacaaaattcatcatcacaatgttggttcaaaaagatagtagaagaaagaacgcgtgggtgtgttaattaccagaagcttttgtcccttgagctttggatggtcaaatgcaggttggagatgagagggaacacagtctatgagatcaccatctgggctctgcaaatctcagcagcaaacaagttagctagagatgtaaatgttcagtgtgaaaaaaaaagaagaagaaagataacaaacaagttagcaatgatgacctgaatggtcttgagagaaggcttgttgagtttcttgaggagagccctgatcctcttgtacttaagcagctccttccctggcctaagccttgcagcagcagtagcattactggcggtgtcttcactgctactgcgcatggagggcaatgcagcagtgctactggcagaggagatgagcaagagcaaggtgaggaggaggagcaagggaacaaagtggaagctacaagccatcctccttttgcttccacagcttgtctggatctagcaagcacgcacacgcgcacacacacacacagtcacaggagagagtggcaatagtatgtggttgtcttcttcctgtgcctcctcacctctcctacactgctgcaccctttgaagcaagtgatcactgaactttgcctcaccagcatctagctaggaggaggctgctgttgcttatgccactgctgctgctccactgctccactactattcagcaacttgcaagcaaggtttgtagttgtactagtactatc
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| CDS seq | atggcttgtagcttccactttgttcccttgctcctcctcctcaccttgctcttgctcatctcctctgccagtagcactgctgcattgccctccatgcgcagtagcagtgaagacaccgccagtaatgctactgctgctgcaaggcttaggccagggaaggagctgcttaagtacaagaggatcagggctctcctcaagaaactcaacaagccttctctcaagaccattcagagcccagatggtgatctcatagactgtgttccctctcatctccaacctgcatttgaccatccaaagctcaagggacaaaagcttctggacccaccggagaggcccaagaactacaacctcaccattgccgtcagcagcagcagcagcagtagagtaggtgaggtggtggtgcaggcctggcatgccgccggcgaggagtgcccggaagggacggtggcgatacgccggacgacggagaaggacctgctcagggccagctccctccggaggtacggcaggaagccggcacgctggaatattcgccgtgattccaccagcaacggccatgagcatgcagttggatatgtgaacaatgataattactatggggccaaagctagtgttaatgtgtggtcaccaaggataggtgacccatctgagttcagcctgtcacagatctgggttatctctggctccttcggcaatgatctgaacaccattgaagctggatggcaggtcagccccgagctgtatggagacagtaacccaaggttcttcacatattggacaaccgacgcatatcaagagaccggttgctacaaccacaactgccgtggatttgtccaaacgaccaacaagatcgcgatcggcgcggctatcacgccagaatcggtgtacaacggaaggcagtttgacattaccctgatgctatggaagtttggcggcgaggtggtgaacacgcggccgtcggggtcgcacacggcgacgcagatggggagcggtcacttccccggcgaggggttcgaccgcgccgcctacttccgcaacctgcaggtggtggactgggacaacagcctcatcccggcggccaacctcaagctcctcgccgaccaccctgcctgctacgacatccagggaggctccaactcctactggggcagctacttctactacggcggccccggcaggaatgtcaaatgcccttga
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| Protein seq | MACSFHFVPLLLLLTLLLLISSASSTAALPSMRSSSEDTASNATAAARLRPGKELLKYKRIRALLKKLNKPSLKTIQSPDGDLIDCVPSHLQPAFDHPKLKGQKLLDPPERPKNYNLTIAVSSSSSSRVGEVVVQAWHAAGEECPEGTVAIRRTTEKDLLRASSLRRYGRKPARWNIRRDSTSNGHEHAVGYVNNDNYYGAKASVNVWSPRIGDPSEFSLSQIWVISGSFGNDLNTIEAGWQVSPELYGDSNPRFFTYWTTDAYQETGCYNHNCRGFVQTTNKIAIGAAITPESVYNGRQFDITLMLWKFGGEVVNTRPSGSHTATQMGSGHFPGEGFDRAAYFRNLQVVDWDNSLIPAANLKLLADHPACYDIQGGSNSYWGSYFYYGGPGRNVKCP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0015120 | OsLima_06g0015120.01 | Chr06 | 15276862 | 15280883 | - | NAM | ||
| CDS seq | atggcttgtagcttccactttgttcccttgctcctcctcctcaccttgctcttgctcatctcctctgccagtagcactgctgcattgccctccatgcgcagtagcagtgaagacaccgccagtaatgctactgctgctgcaaggcttaggccagggaaggagctgcttaagtacaagaggatcagggctctcctcaagaaactcaacaagccttctctcaagaccattcagagcccagatggtgatctcatagactgtgttccctctcatctccaacctgcatttgaccatccaaagctcaagggacaaaagcttctggacccaccggagaggcccaagaactacaacctcaccattgccgtcagcagcagcagcagcagtagagtaggtgaggtggtggtgcaggcctggcatgccgccggcgaggagtgcccggaagggacggtggcgatacgccggacgacggagaaggacctgctcagggccagctccctccggaggtacggcaggaagccggcacgctggaatattcgccgtgattccaccagcaacggccatgagcatgcagttggatatgtgaacaatgataattactatggggccaaagctagtgttaatgtgtggtcaccaaggataggtgacccatctgagttcagcctgtcacagatctgggttatctctggctccttcggcaatgatctgaacaccattgaagctggatggcaggtcagccccgagctgtatggagacagtaacccaaggttcttcacatattggacaaccgacgcatatcaagagaccggttgctacaaccacaactgccgtggatttgtccaaacgaccaacaagatcgcgatcggcgcggctatcacgccagaatcggtgtacaacggaaggcagtttgacattaccctgatgctatggaagtttggcggcgaggtggtgaacacgcggccgtcggggtcgcacacggcgacgcagatggggagcggtcacttccccggcgaggggttcgaccgcgccgcctacttccgcaacctgcaggtggtggactgggacaacagcctcatcccggcggccaacctcaagctcctcgccgaccaccctgcctgctacgacatccagggaggctccaactcctactggggcagctacttctactacggcggccccggcaggaatgtcaaatgcccttga
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| Protein seq | MACSFHFVPLLLLLTLLLLISSASSTAALPSMRSSSEDTASNATAAARLRPGKELLKYKRIRALLKKLNKPSLKTIQSPDGDLIDCVPSHLQPAFDHPKLKGQKLLDPPERPKNYNLTIAVSSSSSSRVGEVVVQAWHAAGEECPEGTVAIRRTTEKDLLRASSLRRYGRKPARWNIRRDSTSNGHEHAVGYVNNDNYYGAKASVNVWSPRIGDPSEFSLSQIWVISGSFGNDLNTIEAGWQVSPELYGDSNPRFFTYWTTDAYQETGCYNHNCRGFVQTTNKIAIGAAITPESVYNGRQFDITLMLWKFGGEVVNTRPSGSHTATQMGSGHFPGEGFDRAAYFRNLQVVDWDNSLIPAANLKLLADHPACYDIQGGSNSYWGSYFYYGGPGRNVKCP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0015120 | OsLima_06g0015120.02 | Chr06 | 15276578 | 15280844 | - | IsoSeq | ||
| CDS seq | atggagacagtaacccaaggttcttcacatattggacaaccgacgcatatcaagagaccggttgctacaaccacaactgccgtggatttgtccaaacgaccaacaagatcgcgatcggcgcggctatcacgccagaatcggtgtacaacggaaggcagtttgacatta |
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| Protein seq | METVTQGSSHIGQPTHIKRPVATTTTAVDLSKRPTRSRSARLSRQNRCTTEGSLTL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 15277131 | 15277562 | - | OsLima_06g0015120.02 | OsLima_06g0015120.01,OsLima_06g0015120.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.153787 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0474500 | RBH | 0.000000 | 0.0 | 0.363529 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g28000 | RBH | 0.000000 | 0.0 | 0.090494 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0474500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0015240 | RBH | 0.0 | 0.0 | 4.380242 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0014940 | RBH | 0.000000 | 2.328311 | 0.169967 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0015220 | RBH | 0.0 | 3.405702 | 4.720345 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0015020 | RBH | 0.0 | 0.121351 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0015140 | RBH | 0.0 | 14.387131 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0237600 | RBH | 3.272348 | 3.486907 | 0.268282 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0014630 | RBH | 0.0 | 0.487507 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0224600 | RBH | 4.860633 | 0.2788645 | 6.6948605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0015080 | RBH | 0.0 | 10.192562 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0014780 | RBH | 0.0 | 13.661480 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0015400 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0014860 | RBH | 0.0 | 1.586578 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G014750 | RBH | 0.0 | 1.651229 | 3.375880 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0015080 | RBH | 0.0 | 2.179191 | 0.000000 |
