Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0014950 | OGI:06040000 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:14795643-14805189 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggatagatatttgatagattagacatgcagagaagacggacaattaacgtacatcggccatcagctggccagcgtatctccagccggcagccagcgatcgacaagcctcgtgggtgggtcacaatactacaaacacacgtagacatggagacacgagagcagtacaacgaaagacgcaaacaacagtattccccatggggaggttgatgatgtctcggaccccttctccttattacttctgaattcgccttctagcaagctggagaagaaggctcatcataatcatcgtcgtcgtcatccgtcatcggagtaataaagattttgtagcagctaggacagcagcaggatcgtcgtctccatcacgatcacaaccatgttatgtatataatctagtgtatgtagggtacttgttggatgctggaaattgaagttggtggagctagctggagcttgaggctagccctaggtgagcaccaaccatcactggggcttgaggtaccttaggaagagaataaacaaatcattaatccatggttcacattaatgaaggaaggtatgtgtgtgtatataaatgagattattagagtgcaggagcagcaaggatatgcaggtagacagaatgaatgagcccatggtgacatcaatttcctcaagaagatgaaaagaaggatctagggacaagggaataaatgtttggttattttaaaagaaaaactaagattggtgtttgtctctatgcgagagaacgattctcaactgttttgatgcactttatgcccgtcgaaaggactgcaagctttaagggactggggtggggtcatgttgcacataatgctctacatgcaaatcatcagcaaagcacgctctggctgctaactatcaacatgcaaaaaagggaagcctttttcttcctttgtattttatatcagcatccctacttcacctgccatgcaatttcagtaaacactttgctaatcaagggcatgcttaacaatcttttggatgaaggcacaacaaagctcctaatgcggtaagctataatagttaattatctgacgggtgctatctctccaccatcttgagaataccaactcataagctaaaagaatataatcttgttgagggcagctgggttcatctccaaagctacttaaaattaagttaaacaaagccctctttttgataaagtttgccaaagctggtgggaaataactatcatagatgaaacctcattgaacaaaaacaagttatttcaggaataggtgaatcaggatgatattctgcatgtctgaagttattctttgacatgcactaccttcacaacttctgtaacctcaaaactaggtatttttgtatgttactgttagaaatcatatcaatgctaaatacgtataagctgtgttctgatagactgatgctatccaagctctcgaaatgcaaatagttcaaactacattggccaatattgctcaaatatgtcatacctagaaatattctctatgtttcagatgaggagctcaggttttctcagggacctactcaacacaataattaggacaaaaacaaaacaagactgtactgaaaaccaaatgagttttcacttgcaaagggaaatcaatactttggatatcgtaattgctagctagcatgtaagaccatttattatgtgattctaaccaattcattctgagtgaaatagaccaatagagatctattctgcgaacaactaaacagacagaccatgttatacagcgtgattaagatataacaaggaacatcatagaacatgatctcatgcacaagataagttttgaactaatttattttgggaagattaggcagtggttacgatcatatacgataacataatttaagtgagaacatgcatcttcttacttcaatttgcttatgccaagcaaagcatttttctatgcacagaaaggcaaataatgaattattgaatgaaccaaaaacgaataaagttataagttagttgaatcacaaaccccaggtttctaagatagtcggactagtagagaaaagagaacaaaattgcatcactagtttaatatcttccttgaaaatacaattttgtcgagaaaaacaggagggctcaatttcagacgatggtaggaaactatgtgacaaccataacataaatgataaagaaaacagcaagtttgcagtcctttcgagataaaggtgaagaagccaagccaagtgataatatatattttccactaaaactgcaaaagaagtcaatccagaaaacatatattttccattgaagacaggataaccaagactagactgtgaccccactctgactgacagaaaactccttgaattctcaatgagtcaatgacagcgggccagttgatgattaaattttaaggggcctgtttgtcaatgactcgcgtgcaagtgttcatacagatatgtggcatgaacagtcaaaaggaagaaagaaaagcaaaaaccataacaggaggaggaaatccaacatgggatctatgaaacaagcaaaagcttcccagagcaagtgactagctgcacccagaaagccaagccgaaagcaacactgtccttgcacacaccacatgactagcatgcaggcatacagcagagggtggtcactatgcgaggatgcatgcatggatggaacagtctttaactgaagagatatatagactagttaactacctctgcccctcactgctgctacggccattggagttgctgctgctggcacctgttgaatcaatgcggccgatgtcattttccagcttcttatagtgcctcttcgcatcatccgctgtcttgccaccgcccaccgcccgcgccacattttcccagcggtccggcgtgtcctcgccgtatgtcgccagcgccagctcaaagaccttgttctgatcgagtgtccacgacgaacccatgcttagtgcctgaagaaattcttcagtaaagaaactaaagctaaggcgatttgcagtgactggtgctggtgctctcactggttcgtgcttctacgcaagaatgcaagggcaacggtgcagcttatatagtggcaagccaggcttggagaataatgctgtgaatggtgggagatggaatggaggtagtgtcagaaaacagtagcagcaaatgaatgacaagtttgcataggaaccacaggaagaaagagccaagattttcatatcatattttcattactttgatgtgtatgaattgcagcgaggaatcagtatcacctcagggctgctgggggagggggaggcccctttcatctctttttgtctccctatcttcatagtgaccatttggttccttttctcattgcatgactctaatactttattcaggctaatgaatactatgattagtaattaccatagactaaatatacctcaaacactagccgagcaatgctcaaacaccatggtgcttcaatgttggattatccatgctttcagggggctaattaaaatgatataattactatttatcataggctatatatacctaaaacattattatttgggcaatgcccaaacgaaaagggtgacggcctctttgctggacaataacttatcaatactgttaatataagcattaattatacgctaattacacctaaaacagtattaaaatagtgcagacatgtactgttagatacgtcattcgtaagtaatgtaccaacttgtatcggagaatatttagcacgacaaaaagctgctgtgcctggcattttgacgtacactgattcactgtatgttggagacacaaggcacaatatccaccgccagttgcagctcaatatggcaaattttatgtaccatgattccagtttgtacaagaaggaccattttgggaataaatgggacaacaattattgcagctctaaggcaagaagctaagaaattagcactgttgtggtttcaaagatctattgatcacaatctaccaatgatctttagacttttactccaataagacaaaacataagtgatgaacaaaatttggctacattttttttttcatatttcaacaaactttgttaaaaggtagtagctccttcacctcagattttaaccgaaggcactttcatacaaagggtggaaagtcatagagcttattaggactggtgcaaataagaccaacccgagtttgcctttctttagttcaggaggtatgaaaaggtacataacatgcctccttttgatcagaaaggataggagactaggttcatctccccttccatatatccagttgtctgaattctcaacccatgagggcttatggatcccaattgaaggataagtggtgcataaaatccatgtccacccccccccccccccccacccgctgaaaatttgtctgttgctattggaatggcagacaaattggatacatagctaacctagacccattttttttgaaactctattgatagacagatccaacatggaactgttttggtgcacaggtttgtttcagatcaaagactgttttaattgcttcagatgtgtgcacaagtgggacaactagatctgatccaaatctagaacctacaagaccaaaagttaagagactgtatttttccatagttgcacaggacagtgatatataactgataactaaaagaacaatatctgcccatagactactgaactgtgcatgcatttcagctaagatctgattttgctatccatgttcgagcagcttctcttcaaataattaattatacagaagaaaatattattttattatattctataaaagtataacatctatcagggcatgtttagatcccctggcaaaatttttcaccctgacacatcgaatgtttagactcatgcatggagtattaaatataggcaaaaaaaactaattacacagattgcatgtaaattgcgagacgaatcttttaagcctaattgctccatgatctaacaatgtggtgctacagtaaacatttgctaatgacggattaattaggcttaataaattcgtctcacagtttacagacggaatatgtaatttgttttgttattagtctacgtttaatacttcaaatgtgtgttcgtatatccgatgtgacacgccaaaacttttcacccctggattacacagccttagttctatgaagtacaaagtttcaaaaaagatgtgtttcattaaacactgctacctccattccaaaatatagcaacctaatacaggatgtgatacatcctagtactacaaatctaaacaggttgtcccatccagtcctaaattgttatattttggggtggagtgagtatgttgtttgtaggtggcctctacctgagatggaaatatattattttcaactcaaattgaagatcaagtatgcattctgtgttgtgaatatatctgattagttttaaaaaaaatgaagtcaaaaaataaatatatccaacaaatgaaaacaactaaaatatagattaatatatgaacagaaaattaagcatcaaaacaaataaaaaaacaatattccgtttttggtttacagcatctacttaaagtgcccattgaagccatcctctgtacctccaggatgtgctgtgaaggtggtatgcttcactctaattttcactgatagcacatctatctatctattatatactaaaagtccattaaacttcctataaacgctctcaagccgtcacgtggcactcctgcaaacgctcctaggccgccacatagcacggtctaatctcaccgttgattttctcttaaattggtgaacctaatattttttatcgttagattagatgtattattttaaaaaagtaataattttattatgtacactgtgggccggaaaaaagaaaccaaacataagtacttcgtgtcttacgtaactggaaaagaatcaacgaaacatacctactgttcacggaagaaaagaaaacctgcgtacgtacttgcaataaaaaccaataaagtaaaaaaaaaacttacgtaacatatgtacgtagtgccattgaaaaaaaatggatggtgattttctactatttAaaaataaaataaaatactctaaaaacttacgcaaatatacatagttaaactaaatcttctacaataaaaaaataagttgtcctatctttaaattattttaaaattatatatctaatttgtgatccagtcacatgaggtcaacatataataaataatgttataataatattttaaaggaaaaaaaggacgaattacaccttgaactattatggtcgactgaattacccccataaacccgaaagtcaaacatctttcatcttcaactatcattaatattagacaaattacccgctgactcaacccaaagtggttttggtcctacgtgatagtccagttaacattttcttcaaaaacaaattggtgggacccacctatcatatctctccctcacccctcaccccactctctttcttctccctccacgtctgtcaatcggcaaggctaggggcgatgattggcggggcaaaggagctcgagtggtgagtggcggaggtggctcctcctcggcatctaccggtgcgtgtctccttgatggccgcgcggcttctcctctacccccatcggcgcgtgaagaggacaatagcggtggggcgaaggagctcgagaggcggaggcggttgagggtgttgagcggtgaaggcttctcctcctcagctatctcggccgccacattctcacttcgacggaggccatcatctccatcccttccaacacatctcatcatcacgtgacggccgctagaggcgaggacctgtgctggtcctccatggccagattcggctgtgcccctgccattgagaactcccccaacaaatgcaatcgtggctctatctaccacagcatgccatcccaccacggttcttaatcgatccccacaaccaatgcctctctcctgacgagacagaaagcaccaatcaagaaaaacaaggtggatcaatcaagagagcaagagcagtggaatagacgaagaaggagaacagcggcaggacggcggcacgcctgcccagccgccccctgcagcaaggggagggataagagagagaggctggggaatgggattgaggaaatgagggagagagaggggagagtggagatagagagggtagagagtgtgattagtaggtcccacctattttattttctaaaaaatgcttactggactgtcatataggaacaaaaccacttcgggttgagttaggggggtaattcatttggtactaatagttgagggtgaaagatgtctggttttcgggtttatgggggtaattcgtactttttcctattttaaaaaaattcacatcatatttcaggtgtcaaatatcacttcacgactatacaatgctaatttaaatctacatatgtaaaataaatgaaaacaacacaatttagttgtgtatttttttaagtagatctgatttgattttaatttgttagagattaagattctcTttttttttaatctttagaattatttcattagtatctgataagtgagcaacataaatgttacatagatgtaaaaagaattatgaaaaatatttcaagacaattattcttgctataatacaaccacttaaaccatcatgagatttatggtcatatgtaggtttttctctgtgtcaaattgttttgataacaaataaacaatcaagtaacatgcgcaataaactactcatgatatattttcttatagttgaagaattccaacacatcaggcataatttgatggacgtatgtcatgcaccctattgatgtgactataaagtatacttcaataaattagttattgtaaataagtttgggaaaatagattcattctctaaattaattagtaaaggtgtctcatctgattatgaataataggcattgaaaaaaaaaacaaaaaattatagatatttgtcaaaatataaccaataatctggtgctttggaaattatcgtggtagtatttaaaaaaccctttatccaggttaaaacaaatcacttatagtagaaatagatatgaaacaactccagtattccataatcgtgacacatgttttcataaattcaaggttgtacggtttcaagtaatatgtccaaactagatattaatgaaaacatgtttaaaatagagtcaagatctattttaaaaatatcatatacacgtaaacattcataacaaaaattcaagcaacattaaataagtgcccgcgcatacgcgtgtgctaccttcctagtttcttttaattcatacttggatctttcacacctctgttgtgcgtatctttgattaagttataagacaatagccataaaccaaacatcaacaataaactgataaatttcaagaagatagaacaaaacatgaacagccattttcagcaacagttgtaaattcctatacgtctggctggaaactagtgatccagatgtgttggttgactagacaactctatacactgttttataaaactccgcatgtactacaaaagtgggattctgtgagaactgagttggtacaaactgagaatttctagcatcctaacaggccgtgtcataaagtgattttggaagaatatatgcatgattcactaaagtaggtgagaccagagtggctccaaaaggatttcgcccaataatgcagcaatatgataaattttataaaaagctccaacaaaatgtgattttccaattcagctcctgctccatgctactgtctaacttcagcacatcttatcataacgcaaatgcattacaagagaataagaaaaacatcagcacataacatccaatgttaatagtagttttataattcatctggatcctagaaagaacacatcaatttaatggaatatttttttctgagggaaacaatggtgggtattttcaccagcctgaacttttattcataagcaagaaacagactacacaattcagagtacaggggcagaggaaggaagatacatattagttggatcctattgcactagaggacaatgtaaatttgaacaccatcatagcaatatattagagagcttaacacgcatctgctacagctgttatgataagtaggaatttatcacagtaaagattggggaatcttttaatttgaagttagtccatatgttgttccctcaactccaaaactccaaattgtaaaagttgtttacaagtcataatccgggtagatattctctctattcatttcactgttgtcttaacacaggtcataggatgggcagggaagatcaacagataagagagagaagcatgtactctagaggcacaatacagtacaggactcacgaaactactgcactgttggccatagcacagtgccatgatcaggagtatgtcttccccaaatcccacataagttcttaggtaatcaccatagtgaatgctcctataatacacccttcctctcaccatccataccacaacaagagcctaagctttgtgttccccaaccacaggcatgccttcactgtagctcactggtgtcgtaccgtgaacctcat
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| CDS seq | atgaggttcacggcactaagcatgggttcgtcgtggacactcgatcagaacaaggtctttgagctggcgctggcgacatacggcgaggacacgccggaccgctgggaaaatgtggcgcgggcggtgggcggtggcaagacagcggatgatgcgaagaggcactataagaagctggaaaatgacatcggccgcattgattcaacaggtgccagcagcagcaactccaatggccgtagcagcagtgaggggcagaggtacctcaagccccagtga |
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| Protein seq | MRFTALSMGSSWTLDQNKVFELALATYGEDTPDRWENVARAVGGGKTADDAKRHYKKLENDIGRIDSTGASSSNSNGRSSSEGQRYLKPQ |
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| Function | Protein RADIALIS-like 1 [UniProtKB/Swiss-Prot:F4JVB8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0014950 | OsLima_06g0014950.01 | Chr06 | 14795643 | 14805189 | - | NAM | ||
| CDS seq | atgaggttcacggcactaagcatgggttcgtcgtggacactcgatcagaacaaggtctttgagctggcgctggcgacatacggcgaggacacgccggaccgctgggaaaatgtggcgcgggcggtgggcggtggcaagacagcggatgatgcgaagaggcactataagaagctggaaaatgacatcggccgcattgattcaacaggtgccagcagcagcaactccaatggccgtagcagcagtgaggggcagaggtacctcaagccccagtga
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| Protein seq | MRFTALSMGSSWTLDQNKVFELALATYGEDTPDRWENVARAVGGGKTADDAKRHYKKLENDIGRIDSTGASSSNSNGRSSSEGQRYLKPQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.329328 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0014960 | RBH | 0.0 | 0.0 | 5.095141 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0014730 | RBH | 0.169972 | 0.0 | 2.300997 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0014940 | RBH | 0.870230 | 0.0 | 18.095127 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0014830 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0014930 | RBH | 0.0 | 0.0 | 1.037211 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0233000 | RBH | 0.9485355 | 0.2064775 | 1.079196 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0014430 | RBH | 0.116293 | 0.0 | 2.071871 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0221700 | RBH | 1.641711 | 0.04854 | 2.373931 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0030440 | RBH | 1.577637 | 0.041643 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0014890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0014590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0033490 | RBH | 0.000000 | 0.0 | 0.216159 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0014690 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G014550 | RBH | 0.0 | 0.0 | 0.329714 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0014900 | RBH | 0.502248 | 5.249730 | 2.051689 |
