Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0014790 | OGI:06039550 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:14513250-14520518 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggggcggccaccaacgccaagcacggggggcccgggtttccggttcacgcaggaggaggtggccgagatggagtcgctcctgcggcatctcaacaacggcatcccggacggctccttgatccagtccctcgccgacaggttcaccgcctccgccgcgcgcgccggcaaggtcggcgtccggcccaagcaggtaatagcccgtgtgtctcctttccggtggggaattcgatcgcttatgtccttaattctgacacgtcgatccgggccggggttggtggtgcgcggcaggtgtggtactggttccagaaccggaagtactcgcagcgctctaggaactcgaccaagatgctaccggcggcgtccggcgaccacaagtcggccttcgcgcgttcctcaggtgacttttcaattgctaataacttgggtgttacttgcgctgtgtacattgtgctactatagttaattagtattgtaaatattcattcgggcattcacgatgttacatgcaaagtaaccttcagaaataaaatattatttttgttctacctttatgtattaggagaagagaaagcaagaaatattgctatggctgactttaagcttaaggcaagagcataagaaatAaaaaaattagttcatgtctttaacaacatgcatggtgctctttcatccatgttgaatagagtttttttcatgagtgagtcccagtttaagatcaagaaaagaccataacataaggctgtaggttctatcttatttctctagtgaccttaaatattgaggttgcccttcgcatacttagcactgtttaggggtttagagcgatgaaaaatgcgtatgtaagattaatttgtgcaatgattcatggcgcgtacgacccttagcatagaaaggggttggttctggacttctggttgtgggtgttaccatgatattatatagtagtacgtgttttgctcgtccgtgcaaggTttcttctgcatctgtgttttcctaaaaataaaatccctggagatgcaaggttagaaatttcctatgaattatttccctgtatcggttttcccctctccgttgcctcctccaatcttcagcattcttctttatcctgtgattgtttattttgaagttcaaaaatcagtgaagaattctttggagggtggccagctcgagtttgaggcaaagtccgttagagatggtgcatggtacgtacatatatccccttgttcaaaaaaatgattggtattttacattggttcgtgtaattttgctgacagtaccgtacacataattatcaaacctgtgaaagggcacatagcatagtggttgcagtgacatgagtagcaccccaacgtcctgagttcaaatctccataagagcgaatttcagattggtttatttgaagctaagttccctatctagtaggctaagagcatcaccaagagcttccttattctattccctatccttgaatttaaaaaattttagtcaaaaattacatccaacagatttcctaacctatctcccaataatccaggttcccaagtttggatatcttgttacccacattcagggagcgattttttcttcccaatcgccgtcttcgctatctcacgcgcgcaggggaaaaatattcccgtgctccttttctcgctctcggtcttcctcgcaggcgttagcgacatggtaGgggaaggagaagctggcggagaggggaatcaggggagatcaacaaccaacaggcggctcttggtgatgctcttggtgatgctcttaagttcctaatttaagaggctgcatatatccagttggatgtagaggtcgggtaaaaaatactcttctctagaaaaaacataattatcaaaaccgagccagaatagcggtctgactgcaataaaccggacataaggttctgattgggccaagccaatctaatcactctataagtttagcacttatagcactactaaggaattgattttttttttcacaagatcccctccaagctccaagcgagccataattatattcacgtgcacaaatatttgaatgcggttcggttaaggcccacctacaaaaatgaatttttcatacgcgtgttaagaggctgcttgcggaattccttcttctcaggtggtgtgcaacggccggcctcattcattcgttttttttccaaaccatgtgcctgcacttcccacatctacttttcagtcgcactcctctctctcatatcctccacttaccagtcatctctcccacgcttccctcatttccccatcctcctctctctcccacgctctctctatgcggtggtgtggtgacggcgacagcctcgggtagcgaaagcgactgtggcatgggaagcctcaggagcaccagatttgcatccagtgggtttgggagcagtggatgcgccctcgtgcaagcggagatgacgggagggccgcatggtgaccatagcactgggagcgaagaccacgaccagggcagcggtgtgcaggcttggagcagcggatcaaacgcccatggctcgggaagagcggatatgttgccggcgggctcgggagaggtgcatccaccgccgacagtctcaggaagagcatatccgctgccggcaggctcaggaatagcggatccgccctcgcacacaaaaaatcgagcctttgcaattggtctccttggatgtctgtctgcgaaaatggtttttcacatgtggttgtgacatgtagacacctggcacccacctgcctacgaaaatgtttttggccgtatgtgaagatcatttctatgctaatgtggtcactggtatgatctccgactcactaagcttagttctatgctagtcgcaatgagaaatgtatgtttgttgtcatcaaaagttgttgttattagtaaagtagttaatgttaatatgtaaacatttaaaaaaatttcaaactcatttaaattggttatatacttaatttcaatcttgatgcccgggcacaatggtgccacagttaattttcccaaccatttagcgcatgcatctcttatttcttaaatcctttttcctttaaccacggaagagcttttatgcactatgttattgaaggtgttatatacgttttactccctctgttttttaatatatgacatcattgactttagatgtaatatttgacttttcgtcttatcaaaataatttatataaataaaatttaatttgcttgacttgttttatcatcaaacacactctaacatttttttacacatttacactaaatttttgaaaaagacgaatagtcaaaccttatacgaaaagtcatatgatatatataaaacaactgaggttagtatgtccctatttcgaaagccttgcactttcacgtgcctaacaaagattttacatattgcaggtatgatgttgctgccttcctttcccataggttgtcccagtctggtgaactggtaagaaacataaatttttcgttatatatggttaatgttgcaaaactcgtcttttgctttcttaatgaaagcaattttctgctttcaacctagatgattccattttatcgtttgtcaaagtacgatttgcgagttactttttttccctataaatgtaccagggtgttaatataactttgtgaacattgtgtatctgctagaccaggccttacatAaaaaaaatacactagagttgaataaattgttttttcttctcaacatatgccaatatacaaaaggaaatttgtagataattaaagattttttattttttccatatagttgcgtgttggtctagtactagcagaatttctgtaaaatcgtgtatgtgtgtactatagaatatcatcagtgccgattggggagtctcatcagtgccggttctctaaccggcactaccattgggatgattggggcgctggtgaggagggctcattagctggttgatgagccggtttcccaactggcactcctgagccaaaaataaaaagaataggctggtaatataaacattaatgcaaccaaatccaatgcacatttgccaccaaatccccatccatatttgcagattaagaacgtgaattccacatccagagttcaaagatgagaacaaccacatcacaaatcaacagcaggctattgacattgattgattcaattattcatcaacatcatcaataactgcagaaccacatcacagaccaaatccaactgccatattagaagtacaacagaacaacaacacaactaaatggagtcactgccaacgccatcgttgatctccctcgcagccgttgtcaccctcaaactgcacatgccatccgaccattaaggagagggggaggccgacaccactcattggagcatgtggttgtcgcccctgtccttaagaccgggaagaaataggtgactgcgatggtggcgtagaatagtggagagctagtgactaagaaaaggggaggcgtggacgatggggtagaggggggggggggacaggggaggacgctggtggtgcaaaaggtggactagcactgatgtcctcgtatcagtacaggtataaaaaaccaggactaatacgtattggatacatcagtgtaattttattttaatgaccaatactgatgaccttattagtgtcaggtgtttttttatggtgcacaaaggttgagatggtgggaaaacccctatcagtgcggggttttaactaaccggcattgatggggcggcagtgattacatgttttgtagtagtagtatcatatatctatgttacttagctttgttaaaggcatgtatagtaaaataatttctaatagaacaattatttgtattttaggaagtatgggttcgattttctggatttggagctagggacgacgaatggattgatgtccatacatgtgtgcggcaacgttctcatccatgtgtgtcaaccgaatgtgccgctgttcttcctggggaccaaattctttgcttccaggtctggccatgttttacttttatcagaattgaagtctagttgtatccattcagaattttgacttgaagttagaaaatgatggaagggtgttttctgtttgctctactctaagaagatattttatttttacattaattcttttgccaaaataaaggatgtctattcgtataatatatttctgtaaaaacagaaggggcataagctaggggaacatatcctatgcccataaggcttctcgtgtacacactgtgcacactaactaaaaaaattcaccaaaaaatatacatgtgctttcagtagtattacatttacatgtaaagtctcatctttaaattcatatccctaagtggagagatataggcataattttttcataactttgataaatgtgaaataaaatgttgttccaaaaatacagatgggcgttaaatattcttaataggtgaatcatatcattggtttgatctttgttttctctcaaattttcttttaaagtaaattttcttttaaagtactattacttacacaaattgttggctcacaccaataattacatctaccctaaatttaccaggaaggcaaacatcaggctctgtattttgatgctcatgtccttgatgctcaaaagcgtaggcatgatgcaagaggttgtcgttgcagatttcttgtttgctatgatcatgatgactctgaggtatgtcattcattccgcccattaaatttgatgtgaccattgtagtaatgcatgcactaagcatcatgttttaattaaattatgtacttccatataaataagcgctgtagttcttgaagcatggttgtagtttgaactcgcataagcaatttcatgtttgttcaaccaacaagttcaaggagcttatatatatgcatgtagcaattcatcattccataacaacgtatatgaatatttttttctatgtttgtaaagttgttatggaatttataccgatgagaatgtttacagtacgatttattggtagtataaagaagggaagtttaggagtttgccacaaaagtaaaaaaatatgatattttagtaatcttatgctttagtattgagtcatccagttgtggtaattggtggagggacacgtggattcacggtagctggcactggcagcgcctcgtcattgtcattgtgaaggatgacaatgaataggaaattggatctagtaggaaaaacacctaccatttccttgtaggccatgaatttacacaattgccccaatccaatagtatagaaagaaaataaattttatccaattcacacaattgcctcaatcaagtagtatagaaagagtacatataaacccttggatcacctatattgtcaatacaaactaacagtaggttggactctaaaagttcccattttactatatatgttcatatattagcttgtgtatgtttaacccataatagctaattggtcatgcgctgcagcaaattcctgagaacatagcaaaatcaagtttttgttaacaatatgtgtatttagttggttcaaacaagactttttatattaaaaacaaacaaaatgccatgtttagaaaattaaggagctgcagtccacggaagacggactagtagattgacttacccaaatcctaatatcatggcctatgatggtggtagtggtgccggtagaaccacgaccaccgctactctcttttagttcagtagtatacattatcgctatataggttagtgtcattgtttatgttcctgttccataagcaatttcatttcttctctagtaacatgtgctaaaacactactttattgggagtgtaaaacaatacttttctgctatattatccagctgctagttgtataactgaaacattatgatttgttactacatgtatctccatttattagtatttatgctttgtttaaaatggcaggaaattgttccactgaggaagatgtgtcgtcggccagaaactgactacagacttgagattctacatgctgctggagcagcaaatgctgctaaagaggctgtggttgattcggtgattgcttagtcacttcgatcgaaagggtaatatagttgtctggaatttccactccaaacatagtggttgcttaattaggacccaatgttattgttgtatcattgacttgatttctattgcacaaattaggtatggcacacaaattttagtttacatattatgccaaaaagtgttgaaacgcttatggatcgggtgcccgatccggagccaaaaaatcggggcccataccagccatctagcgtgcgcaacttacctcgacc
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| CDS seq | atggggcggccaccaacgccaagcacggggggcccgggtttccggttcacgcaggaggaggtggccgagatggagtcgctcctgcggcatctcaacaacggcatcccggacggctccttgatccagtccctcgccgacaggttcaccgcctccgccgcgcgcgccggcaaggtcggcgtccggcccaagcaggtgtggtactggttccagaaccggaagtactcgcagcgctctaggaactcgaccaagatgctaccggcggcgtccggcgaccacaagtcggccttcgcgcgttcctcagttcaaaaatcagtgaagaattctttggagggtggccagctcgagtttgaggcaaagtccgttagagatggtgcatggtatgatgttgctgccttcctttcccataggttgtcccagtctggtgaactggaagtatgggttcgattttctggatttggagctagggacgacgaatggattgatgtccatacatgtgtgcggcaacgttctcatccatgtgtgtcaaccgaatgtgccgctgttcttcctggggaccaaattctttgcttccaggaaggcaaacatcaggctctgtattttgatgctcatgtccttgatgctcaaaagcgtaggcatgatgcaagaggttgtcgttgcagatttcttgtttgctatgatcatgatgactctgaggaaattgttccactgaggaagatgtgtcgtcggccagaaactgactacagacttgagattctacatgctgctggagcagcaaatgctgctaaagaggctgtggttgattcggtgattgcttag
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| Protein seq | MGRPPTPSTGGPGFRFTQEEVAEMESLLRHLNNGIPDGSLIQSLADRFTASAARAGKVGVRPKQVWYWFQNRKYSQRSRNSTKMLPAASGDHKSAFARSSVQKSVKNSLEGGQLEFEAKSVRDGAWYDVAAFLSHRLSQSGELEVWVRFSGFGARDDEWIDVHTCVRQRSHPCVSTECAAVLPGDQILCFQEGKHQALYFDAHVLDAQKRRHDARGCRCRFLVCYDHDDSEEIVPLRKMCRRPETDYRLEILHAAGAANAAKEAVVDSVIA |
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| Function | Protein SAWADEE HOMEODOMAIN HOMOLOG 2 [UniProtKB/Swiss-Prot:Q8RWJ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0014790 | OsLima_06g0014790.01 | Chr06 | 14513250 | 14520518 | + | NAM | ||
| CDS seq | atggggcggccaccaacgccaagcacggggggcccgggtttccggttcacgcaggaggaggtggccgagatggagtcgctcctgcggcatctcaacaacggcatcccggacggctccttgatccagtccctcgccgacaggttcaccgcctccgccgcgcgcgccggcaaggtcggcgtccggcccaagcaggtgtggtactggttccagaaccggaagtactcgcagcgctctaggaactcgaccaagatgctaccggcggcgtccggcgaccacaagtcggccttcgcgcgttcctcagttcaaaaatcagtgaagaattctttggagggtggccagctcgagtttgaggcaaagtccgttagagatggtgcatggtatgatgttgctgccttcctttcccataggttgtcccagtctggtgaactggaagtatgggttcgattttctggatttggagctagggacgacgaatggattgatgtccatacatgtgtgcggcaacgttctcatccatgtgtgtcaaccgaatgtgccgctgttcttcctggggaccaaattctttgcttccaggaaggcaaacatcaggctctgtattttgatgctcatgtccttgatgctcaaaagcgtaggcatgatgcaagaggttgtcgttgcagatttcttgtttgctatgatcatgatgactctgaggaaattgttccactgaggaagatgtgtcgtcggccagaaactgactacagacttgagattctacatgctgctggagcagcaaatgctgctaaagaggctgtggttgattcggtgattgcttag
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| Protein seq | MGRPPTPSTGGPGFRFTQEEVAEMESLLRHLNNGIPDGSLIQSLADRFTASAARAGKVGVRPKQVWYWFQNRKYSQRSRNSTKMLPAASGDHKSAFARSSVQKSVKNSLEGGQLEFEAKSVRDGAWYDVAAFLSHRLSQSGELEVWVRFSGFGARDDEWIDVHTCVRQRSHPCVSTECAAVLPGDQILCFQEGKHQALYFDAHVLDAQKRRHDARGCRCRFLVCYDHDDSEEIVPLRKMCRRPETDYRLEILHAAGAANAAKEAVVDSVIA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.128044 | 0.060847 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0483900 | RBH | 0.705507 | 0.837094 | 1.948401 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g28880 | RBH | 0.477100 | 0.563016 | 0.783594 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0483900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0014800 | RBH | 0.174173 | 0.0 | 3.534676 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0014530 | RBH | 0.0 | 0.0 | 0.743936 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0014780 | RBH | 0.920035 | 0.000000 | 8.554280 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0014650 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0014740 | RBH | 0.0 | 0.0 | 1.433152 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0230400 | RBH | 0.539502 | 0.829228 | 0.1860945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0014220 | RBH | 0.0 | 0.0 | 0.703264 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0219800 | RBH | 0.7785505 | 0.8972335 | 3.5522995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0014730 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0014430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0033360 | RBH | 0.0 | 0.0 | 0.282119 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0014530 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G014360 | RBH | 0.000000 | 0.0 | 1.002720 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0014720 | RBH | 0.0 | 0.0 | 0.000000 |
