Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0014750 | OGI:06039360 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:14463540-14468817 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accacaccaccaccgatcccctctctcagcggctgcctgcctgcctgcctgcctgaacgaggaatcgctcatcgctgcatcactggtaacgtctatctctcctctcgctcgctcgcttcctctccgattcccccatggaatcatggatccatccaactaatcccctcccctcgcagccgcagacgccggcgtggtcgggatggggcggccgccgagcacggggggcccggcgttccggttcacccaggcggaggtggccgagatggaggcccgcctgcagcagctcaacaacgccatcccgcaccgctccgtcatccaggccctcgccgacaagttcacctcctcccccgcccgctccggcaaggtcgccgtccagcccaagcaggttaccattagggttttcccccctcctcctccttcccctcccccttccccggcgggagaattcgccgcctcatctcgatccgtccgcacgcgcaggtgtggaactggttccagaaccggaggtactcgcaccgctccaggagctccaggggcccccgacgctgatgcagaccaagatgctgcccacggggtccgacgagcacaagtcgcctcccttcagggctatgccctctgcctctgcgcactccggctcgccctcaggtcatttgctcatgttactcttgctattaggagtaggtagtggtatatctccgatttcaacaaatttataatggcactgttccgactagacgaatagtaattgtatttttcaaaacaggcaaatttataatgtcatggatccaattaaccctataagtaatgagatacttcggccatatgtcagatccgtgtattggttctatgttagtaaccttccatctatgcatcatgatcatcatttatcattcctttttatcctctgattgttgatctttggtgttcaaaatcagggaagggttctttggagagcggccaggttgaatttgaagcaaagtcggctagagatggcgcatggtatccatgttacttctatgtcttttgtcttttgatttccatgtatgagtatgttcatggcgttttgcttgctgtttgacacatagttatcagactcggaccaaactagtggtctgactggaataaactgaacctaatgttctggcttgatcagcccgtctaattggattgtttcccatattggcccgcaaatcatagctgaactgaacagttttcctacagcctggtggggttaactatgacacagcccatttattcagtaaaattcaaaaatagcatggtcaacagtaaacctccagatgcacctgtgttattggttaacattgtaagtgagaaatataagttctattaaccttgcctgcacagatcacaaattgatagctttcttattataaaatagagcatgtggtttgactgatggccgaatgatccatctgtgactgagtgattcacaggtcatatcttgcaattttgtatttcactgttttggatggttttctttgttctgtattctttataatatgctctatactgagtttaagtttaacgattgcttcttaatcaccattctaacttctaagcagcatacttgtttgttatataggtttgtatctcagtttcgctgactttattatgaagagaattgcttgctatagaattgtcagatactgttaaattaggtttcagttttctttattgatctgtgTtttttttttatgtttgtgttcatatctacaaagttgaatacaagaccccatttggatgccagaactgaggctagaaaaggggaattagaattggatctctcaattccgtcgttggttgctcttctgatttggagttgtaggccatttccgactgaatcggtggacaactaaattggtcctccaccaattcagagcactatgattggagctttcactggatctttcactggtgaccattcaccaatttcttgtgccactgtcactgtttcacggtctattttctagacctacagctgccatcccttctttcaccactccagtggccatttccttcttccttaactctagcagtcatccttcatctttctcaactctggttgtcagcgtccctgacaaaatctgctgttaagctgtctacttccctagtagccgctgcagccattgattgctctggtcagcacaccagtgatgctccagccaccacttcggcaactacccaagaaggaacatcaggcctcctggtttgtttgtttgcttccaatgtgcgaattcatttgcgtattgcatccaaccttaaactggatatttattgagaggtcatttctatttgagatgcctttggcaaccaatcacaatgaaaataattgagatgacaattcgaattcaatttggatttgaattgaagatacaattaaattcattcaacccaatgtagaggggaactggttatgcaagatctcttttaacatctgattaagtatatcagcattcttatggtctgtcgttcatataagttcacttctatggtagtggtagccatcctaaacaaatgtatatttgtgctcaacgaatattgtgcctgatcgttaactacaaatgcaaatgaatcaacgagttcagatactttctacactatgttcttgaaaatttgtaatctctgtgtttttacattttttttgtgtgtataactaagcttttatgtgcaggtatgatgttgctgccttcctgtctcatcggttgttcgaatctggtgatccagtaaggaacatagtttttttattagatataatttatgttgctaaatgcatgtctggctttctttattgaaagcactttgctagctttgaacctgtagctgattcaatttatcatttatcttaatgcggttgcatactcaatcctttttctttaattattttttaaaaaacaagtttctactgtattattggtgttctagtatgactttcagaacattctgtatttttttaaaaaatctggcttatatctaaaattggcactacagttgaataatttttttccaacatatgccaatatgacatgcctgcgttgttgtgccggtatttttataaaactgtgtatgcgcaatgacatttattcctagttacaacatgtggtataaataatttgtctcacatgagcaattcttaatattttaggaagtacgagttcgcttttctggatttggagccgaggaagatgaatggataaatgtccgtaaatgtgtgcggcaacgttctcttccgtgtgaatcaactgaatgtgttgctgttcttcctggagacctcatactttgctttcaggtcttgccatcttagacatcttttcttgacctatgtactgtatctacatgtcacagattcagaattgatgtctagttgaattcaaaattttaattttaagttagaagattgatttctgtttgttctgttctaagaaaatgtatcacagattttccttaaaacttggccaaataaagccatgcatatttgatacttgatgcacaaaacaccaaggggtgtaaaactgtaaaccagtaattgaacacacatttaggttcctgctttttaataaagaaatctaaacataaatatatgttcttcgatgattatcttgatgaaatgctatttataattatgattaggtatcacatttactcaaattgttgtctaacatgaacaaatacatctgtcctaaattgaccaggaaggcaaagagcaggctctgtatttcgatgctcgtgtccttgatgctcaaaggcgtagacatgatgtacgagggtgtcgctgtagatttcttgttcgctacgatcatgatcactctgaggtattttactcactgcatccacctgttgaatgttgtgtgactattgtagtaatgcatgctctaagaatctaatttactctcttacattatggctttaattatatgcttcataagtactatatatgttgaagcgtcgttgtttaagttcctgaacttgcatacgcaattccatcaacgctttactgtgcaagtttaacgaccttatgcatatgatattagcctgcgcatgttatacccgtgagtaccatatgttgtagcatcatcctataggttcctgtagaagtttaagcaatttttatttatgctctagatgtggaattttaaggacaccatgcaaatttatattcatcatttctgaaaatttaagtatgcatgcatggattttccaagttcatatgatattagcccatgcatcctgctgtcttgcgcctttcttattttttattgccgaactacctaaaataatgtattttaccgggcttttgctagttatttcactttgttgaataaaactaaaaccttattgtattttactctgattcgtttacaatcattaaaattccatttaaaatgacaggaaattgttccactgaggaaggtatgtcgccgaccagaaactgactacaggcttcagattctgcatgctgctagagcagcaggtatggctaaagaggctgtggttgatttggtgtcgcacaatgataagagctcagcagagcagaaacccccaaagcagcacaagatgatggatgtgaacactgatgaggtaaccatggtttctaaccaagaccaagaagagtcaacaggcaagcctgctgctaccttgccagcagcaccggtcaaaaccctgaatgattcagcttcagcttcagatgtccaaatgggcgaggcacaggctgctccaaaagttgaatcttctgatgaagtagaagacaagatgaaagagggatagttggttgcctttgctgagcattatgtttggctggcggctgcagtaaacagcacctggttaaatgcattggcatctgatcacctgttctcctgctaggctgctgcacacatgttgtgacttccaacgcaggaatgtatgtcttcagtcttcacaacacatgttgtgacttgtgaagatttagtaattgcttaggaaccctctcaaaagggtaaatatgattgttaggaactttagctccaaacataaattgattgcataggaactttagctccgaagaaaatgtaatgtggttgcggtgggattgacttgattgctgtcacacaaattcggccgaggatccgtgttgaccacaaataggaatggcctgccatgccacaactaggatctgtgtttaatatagcgtgccaaaaaggtgtgaatcggtgcctttgaaggttatcatcaattgttctgaaggtaaattttctcaggagaaagtctaatatacaatcttgtg
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| CDS seq | atgcagaccaagatgctgcccacggggtccgacgagcacaagtcgcctcccttcagggctatgccctctgcctctgcgcactccggctcgccctcagggaagggttctttggagagcggccaggttgaatttgaagcaaagtcggctagagatggcgcatggtatgatgttgctgccttcctgtctcatcggttgttcgaatctggtgatccagaagtacgagttcgcttttctggatttggagccgaggaagatgaatggataaatgtccgtaaatgtgtgcggcaacgttctcttccgtgtgaatcaactgaatgtgttgctgttcttcctggagacctcatactttgctttcaggaaggcaaagagcaggctctgtatttcgatgctcgtgtccttgatgctcaaaggcgtagacatgatgtacgagggtgtcgctgtagatttcttgttcgctacgatcatgatcactctgaggaaattgttccactgaggaaggtatgtcgccgaccagaaactgactacaggcttcagattctgcatgctgctagagcagcaggtatggctaaagaggctgtggttgatttggtgtcgcacaatgataagagctcagcagagcagaaacccccaaagcagcacaagatgatggatgtgaacactgatgaggtaaccatggtttctaaccaagaccaagaagagtcaacaggcaagcctgctgctaccttgccagcagcaccggtcaaaaccctgaatgattcagcttcagcttcagatgtccaaatgggcgaggcacaggctgctccaaaagttgaatcttctgatgaagtagaagacaagatgaaagag
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| Protein seq | MQTKMLPTGSDEHKSPPFRAMPSASAHSGSPSGKGSLESGQVEFEAKSARDGAWYDVAAFLSHRLFESGDPEVRVRFSGFGAEEDEWINVRKCVRQRSLPCESTECVAVLPGDLILCFQEGKEQALYFDARVLDAQRRRHDVRGCRCRFLVRYDHDHSEEIVPLRKVCRRPETDYRLQILHAARAAGMAKEAVVDLVSHNDKSSAEQKPPKQHKMMDVNTDEVTMVSNQDQEESTGKPAATLPAAPVKTLNDSASASDVQMGEAQAAPKVESSDEVEDKMKE |
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| Function | Protein SAWADEE HOMEODOMAIN HOMOLOG 2 [UniProtKB/Swiss-Prot:Q8RWJ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0014750 | OsLima_06g0014750.01 | Chr06 | 14463540 | 14468792 | + | NAM | ||
| CDS seq | atgtccgtaaatgtgtgcggcaacgttctcttccgtgtgaatcaactgaatgtgttgctgttcttcctggagacctcatactttgctttcaggaaggcaaagagcaggctctgtatttcgatgctcgtgtccttgatgctcaaaggcgtagacatgatgtacgagggtgtcgctgaaattgttccactgaggaaggtatgtcgccgaccagaaactgactacaggcttcagattctgcatgctgctagagcagcaggtatggctaaagaggctgtggttgatttggtgtcgcacaatgataagagctcagcagagcagaaacccccaaagcagcacaagatgatggatgtgaacactgatgaggtaaccatggtttctaaccaagaccaagaagagtcaacaggcaagcctgctgctaccttgccagcagcaccggtcaaaaccctgaatgattcagcttcagcttcagatgtccaaatgggcgaggcacaggctgctccaaaagttgaatcttctgatgaagtagaagacaagatgaaagagggatag
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| Protein seq | MSVNVCGNVLFRVNQLNVLLFFLETSYFAFRKAKSRLCISMLVSLMLKGVDMMYEGVAEIVPLRKVCRRPETDYRLQILHAARAAGMAKEAVVDLVSHNDKSSAEQKPPKQHKMMDVNTDEVTMVSNQDQEESTGKPAATLPAAPVKTLNDSASASDVQMGEAQAAPKVESSDEVEDKMKEG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0014750 | OsLima_06g0014750.02 | Chr06 | 14463540 | 14466754 | + | NAM | ||
| CDS seq | atggggcggccgccgagcacggggggcccggcgttccggttcacccaggcggaggtggccgagatggaggcccgcctgcagcagctcaacaacgccatcccgcaccgctccgtcatccaggccctcgccgacaagttcacctcctcccccgcccgctccggcaaggtcgccgtccagcccaagcaggagctccaggggcccccgacgctgatgcagaccaagatgctgcccacggggtccgacgagcacaagtatgatgttgctgccttcctgtctcatcggttgttcgaatctggtgatccatacgagttcgcttttctggatttggagccgaggaagatgaatggataa
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| Protein seq | MGRPPSTGGPAFRFTQAEVAEMEARLQQLNNAIPHRSVIQALADKFTSSPARSGKVAVQPKQELQGPPTLMQTKMLPTGSDEHKYDVAAFLSHRLFESGDPYEFAFLDLEPRKMNG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0014750 | OsLima_06g0014750.03 | Chr06 | 14463545 | 14468817 | + | IsoSeq | ||
| CDS seq | atgcagaccaagatgctgcccacggggtccgacgagcacaagtcgcctcccttcagggctatgccctctgcctctgcgcactccggctcgccctcagggaagggttctttggagagcggccaggttgaatttgaagcaaagtcggctagagatggcgcatggtatgatgttgctgccttcctgtctcatcggttgttcgaatctggtgatccagaagtacgagttcgcttttctggatttggagccgaggaagatgaatggataaatgtccgtaaatgtgtgcggcaacgttctcttccgtgtgaatcaactgaatgtgttgctgttcttcctggagacctcatactttgctttcaggaaggcaaagagcaggctctgtatttcgatgctcgtgtccttgatgctcaaaggcgtagacatgatgtacgagggtgtcgctgtagatttcttgttcgctacgatcatgatcactctgaggaaattgttccactgaggaaggtatgtcgccgaccagaaactgactacaggcttcagattctgcatgctgctagagcagcaggtatggctaaagaggctgtggttgatttggtgtcgcacaatgataagagctcagcagagcagaaacccccaaagcagcacaagatgatggatgtgaacactgatgaggtaaccatggtttctaaccaagaccaagaagagtcaacaggcaagcctgctgctaccttgccagcagcaccggtcaaaaccctgaatgattcagcttcagcttcagatgtccaaatgggcgaggcacaggctgctccaaaagttgaatcttctgatgaagtagaagacaagatgaaagag
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| Protein seq | MQTKMLPTGSDEHKSPPFRAMPSASAHSGSPSGKGSLESGQVEFEAKSARDGAWYDVAAFLSHRLFESGDPEVRVRFSGFGAEEDEWINVRKCVRQRSLPCESTECVAVLPGDLILCFQEGKEQALYFDARVLDAQRRRHDVRGCRCRFLVRYDHDHSEEIVPLRKVCRRPETDYRLQILHAARAAGMAKEAVVDLVSHNDKSSAEQKPPKQHKMMDVNTDEVTMVSNQDQEESTGKPAATLPAAPVKTLNDSASASDVQMGEAQAAPKVESSDEVEDKMKE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 14463924 | 14464064 | + | OsLima_06g0014750.01,OsLima_06g0014750.03 | OsLima_06g0014750.03,OsLima_06g0014750.01,OsLima_06g0014750.02 | All |
| A3 | Chr06 | 14466283 | 14466707 | + | OsLima_06g0014750.01,OsLima_06g0014750.03 | OsLima_06g0014750.03,OsLima_06g0014750.01,OsLima_06g0014750.02 | All |
| A5 | Chr06 | 14467331 | 14467947 | + | OsLima_06g0014750.03 | OsLima_06g0014750.03,OsLima_06g0014750.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.050457 | 0.100528 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0485100 | RBH | 2.393322 | 1.311559 | 3.741005 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g29020 | RBH | 1.495559 | 1.522261 | 0.949226 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0485100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0014730 | RBH | 0.934272 | 10.579865 | 8.184674 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0014480 | RBH | 0.473639 | 3.909201 | 2.690227 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0014700 | RBH | 1.963787 | 12.541224 | 13.004323 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0014590 | RBH | 0.000000 | 0.394988 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0014680 | RBH | 11.574873 | 9.723484 | 18.372997 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0229300 | RBH | 10.7814725 | 18.730716 | 38.1526315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0014160 | RBH | 0.433516 | 1.165891 | 1.357964 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0219200 | RBH | 13.887701 | 23.538276 | 47.8663085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0007830 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0014690 | RBH | 1.367440 | 8.121620 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0014390 | RBH | 3.228560 | 5.794137 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0014970 | RBH | 0.111926 | 0.000000 | 1.440613 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0014490 | RBH | 0.436127 | 9.826777 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G014310 | RBH | 1.077387 | 5.091927 | 5.715089 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0014680 | RBH | 2.811564 | 3.692307 | 13.466063 |
