Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0012790 | OGI:06032530 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:11670926-11672258 | ||||||||
| Gene Symbol | prx78, PRX78, OsPRX78 | ||||||||||
| DNA seq | atccacagccagccatctagatcagcagctagcagcagcatcagcagatcgagcagcaaaacattctttgcttaatttggttgttgatttgtgtgtcgtggccatggcgatcgccaggtgttgtgtcgcgctgctgctgctcgtcgtgcttgtcgccgcgggctctgcggccgcggcggctgaccagctccgcgtcgactactaccgcgagacgtgcccgaacgtcgaggccatcgtccgcgacgagatggagaagatcatcggcgccgcccccagcctcgccggcccgctcctccgcctccatttccacgactgcttcgtccgggtacgtactccggtcgccggcgtcgtgtcgcgtcgcgtgcacggcggcgccattgattgatcgatcgatcgatgtcgtgtttttttgcaatttgcaggggtgcgacgcgtccgtgctgctcagctccaccgcggggaacgtggcggagcgcgacgcgaagccgaacaagagcctgcgcgggttcggctccgtggagcgggtgaaggcgaggctggaggcggcgtgcccgggcaccgtgtcgtgcgccgacgtgctcacgctcatggcgcgcgacgccgtcgtgctggcgcggggccccacctggccggtcgccctggggaggagggacggcagggtgtccgccgccggcgaggccgccgccagcctgccacccgccgacggcgacatcgcgacgctcctcaggatcttcgccgccaacgacctcgacatcaaggacctcgccgtgctctccggcgcgcacaccctcggcacggcgcactgcccgtcctacgccggcaggctctacaacttcaccggcaagaacgacgccgacccgtcgctggacggcgagtacgccggcaggctgagggccaggtgcgcgagcgccaccgacgagtccggcatgatctccgagatggacccgggcagctacaagacgttcgacaccagctactaccgccatgtcgcgaagcggagggggctcttctcctccgacgcgtcgctgctcaccgacgccaccaccagggactacgtgcggcggatcgccaccggcaagttcgacgccgagttcttcagcgacttcggcgagtccatgaccaagatgggcaacgtccaggtgctcaccggggaggaaggagagatcaggaagaagtgctacgtcatcaactcgtagaatgaatctagctagttaaaaagcttaattaatttagccgcacgagatgcatacgtggggtgtgtgttaattgatctttgtattatgtcacttattattattattgttcagtaaattgattattctcagtgcgtact
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| CDS seq | atggcgatcgccaggtgttgtgtcgcgctgctgctgctcgtcgtgcttgtcgccgcgggctctgcggccgcggcggctgaccagctccgcgtcgactactaccgcgagacgtgcccgaacgtcgaggccatcgtccgcgacgagatggagaagatcatcggcgccgcccccagcctcgccggcccgctcctccgcctccatttccacgactgcttcgtccgggggtgcgacgcgtccgtgctgctcagctccaccgcggggaacgtggcggagcgcgacgcgaagccgaacaagagcctgcgcgggttcggctccgtggagcgggtgaaggcgaggctggaggcggcgtgcccgggcaccgtgtcgtgcgccgacgtgctcacgctcatggcgcgcgacgccgtcgtgctggcgcggggccccacctggccggtcgccctggggaggagggacggcagggtgtccgccgccggcgaggccgccgccagcctgccacccgccgacggcgacatcgcgacgctcctcaggatcttcgccgccaacgacctcgacatcaaggacctcgccgtgctctccggcgcgcacaccctcggcacggcgcactgcccgtcctacgccggcaggctctacaacttcaccggcaagaacgacgccgacccgtcgctggacggcgagtacgccggcaggctgagggccaggtgcgcgagcgccaccgacgagtccggcatgatctccgagatggacccgggcagctacaagacgttcgacaccagctactaccgccatgtcgcgaagcggagggggctcttctcctccgacgcgtcgctgctcaccgacgccaccaccagggactacgtgcggcggatcgccaccggcaagttcgacgccgagttcttcagcgacttcggcgagtccatgaccaagatgggcaacgtccaggtgctcaccggggaggaaggagagatcaggaagaagtgctacgtcatcaactcgtag
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| Protein seq | MAIARCCVALLLLVVLVAAGSAAAAADQLRVDYYRETCPNVEAIVRDEMEKIIGAAPSLAGPLLRLHFHDCFVRGCDASVLLSSTAGNVAERDAKPNKSLRGFGSVERVKARLEAACPGTVSCADVLTLMARDAVVLARGPTWPVALGRRDGRVSAAGEAAASLPPADGDIATLLRIFAANDLDIKDLAVLSGAHTLGTAHCPSYAGRLYNFTGKNDADPSLDGEYAGRLRARCASATDESGMISEMDPGSYKTFDTSYYRHVAKRRGLFSSDASLLTDATTRDYVRRIATGKFDAEFFSDFGESMTKMGNVQVLTGEEGEIRKKCYVINS |
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| Function | Peroxidase 1 [UniProtKB/Swiss-Prot:P37834] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0012790 | OsLima_06g0012790.01 | Chr06 | 11670926 | 11672258 | + | NAM | ||
| CDS seq | atggcgatcgccaggtgttgtgtcgcgctgctgctgctcgtcgtgcttgtcgccgcgggctctgcggccgcggcggctgaccagctccgcgtcgactactaccgcgagacgtgcccgaacgtcgaggccatcgtccgcgacgagatggagaagatcatcggcgccgcccccagcctcgccggcccgctcctccgcctccatttccacgactgcttcgtccgggggtgcgacgcgtccgtgctgctcagctccaccgcggggaacgtggcggagcgcgacgcgaagccgaacaagagcctgcgcgggttcggctccgtggagcgggtgaaggcgaggctggaggcggcgtgcccgggcaccgtgtcgtgcgccgacgtgctcacgctcatggcgcgcgacgccgtcgtgctggcgcggggccccacctggccggtcgccctggggaggagggacggcagggtgtccgccgccggcgaggccgccgccagcctgccacccgccgacggcgacatcgcgacgctcctcaggatcttcgccgccaacgacctcgacatcaaggacctcgccgtgctctccggcgcgcacaccctcggcacggcgcactgcccgtcctacgccggcaggctctacaacttcaccggcaagaacgacgccgacccgtcgctggacggcgagtacgccggcaggctgagggccaggtgcgcgagcgccaccgacgagtccggcatgatctccgagatggacccgggcagctacaagacgttcgacaccagctactaccgccatgtcgcgaagcggagggggctcttctcctccgacgcgtcgctgctcaccgacgccaccaccagggactacgtgcggcggatcgccaccggcaagttcgacgccgagttcttcagcgacttcggcgagtccatgaccaagatgggcaacgtccaggtgctcaccggggaggaaggagagatcaggaagaagtgctacgtcatcaactcgtag
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| Protein seq | MAIARCCVALLLLVVLVAAGSAAAAADQLRVDYYRETCPNVEAIVRDEMEKIIGAAPSLAGPLLRLHFHDCFVRGCDASVLLSSTAGNVAERDAKPNKSLRGFGSVERVKARLEAACPGTVSCADVLTLMARDAVVLARGPTWPVALGRRDGRVSAAGEAAASLPPADGDIATLLRIFAANDLDIKDLAVLSGAHTLGTAHCPSYAGRLYNFTGKNDADPSLDGEYAGRLRARCASATDESGMISEMDPGSYKTFDTSYYRHVAKRRGLFSSDASLLTDATTRDYVRRIATGKFDAEFFSDFGESMTKMGNVQVLTGEEGEIRKKCYVINS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.636725 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0306300 | RBH | 0.382158 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g20150 | RBH | 0.260147 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0306300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0014520 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0012530 | RBH | 0.0 | 10.192618 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012610 | RBH | 0.993941 | 30.005219 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012660 | RBH | 0.0 | 1.967432 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012790 | RBH | 0.0 | 75.376961 | 3.397959 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0188800 | RBH | 0.9817285 | 3.2705345 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0012250 | RBH | 0.072671 | 6.829059 | 0.278317 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0185200 | RBH | 0.596217 | 0.150764 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0014500 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0012660 | RBH | 0.0 | 25.629347 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0012450 | RBH | 0.0 | 48.531849 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012940 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0012540 | RBH | 0.0 | 37.601055 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G012400 | RBH | 0.0 | 40.100170 | 0.690451 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012730 | RBH | 0.0 | 27.801897 | 0.909594 |
