Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0012760 | OGI:06032360 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:11629742-11632897 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaaaacgatagcggtaattactaaaattttgcactttattctcatttataatgagaagaaagtgcaaaattgttttgacatatgcatatgggtatccgtgtctagtcatttcaatgcactgtcaataactaaaagtatcattgaggcaatttcaaaagagacccctccagccaacagactggaaactctacatgccatccttgaagataggttaatctctaagagatttttgcttattttggacaatgtttggaatgacaacgatataaatgagtgggagaaattatttgctcccctcagaattggtggaactgggagcattattttggttacgactcggatgaagtcggtaggagatatggctggttatgcccttggactcaaggtgcaacatctgaaattagatggtttattagagaaagatattctgatgctattcaacaagcatgcatttagtgctctcaatctagattgctgcaaaaacttacacttacttggtgaacagattgtgaaaaagattagtggatgtcccttagcagccaaggttataggtgcacatttaagggataatatgaattatatgtactgggagaaaattttgcaggaagacttgcagaatttacaattaggcatggatggcatcatgaaggtccttagattaagctaccatcatctgcctgcaaacctacagctgtgctttagatactgtagtatatttccaccagggtacagatttgggaggaaagagctggtcgagatgtggttgggttcagggatgatttcacaaactgaagatgaaacaaaagctctggaagatattggaggacaatgtttggatcagctggcaagaaaatcattctttgagtttatatcagaagaaatggatggtgtaattgttgaagagtattattctatgcatgacgtattgcatgatttggcacaagttgtttcttctggcgaatgcttgaggattggagttattagatcaatgaagattgcaaaaacagttcgccacttatcagtcagaatagtagattcagttcatctcaaggagctctgccatcttaacaacttgcacagtttagttattgaatttgtcggagatgaccctagtatgagttattcaattgcatttgatgaaattttgaaaagatttaatagcctgcgcctattgtgtgtaactgccaaatgctggtttgacatacctgatactgtttcaaagttagtacaccttcgctacatctccttgtttagcaccaaaagatctttcctagtgtcagtgcataaactgttcagtctttaccatctagaaacactgaagattatggaatattcagaagggaaaatgcttaaactaaatggcatgtgtaatctggtacacttgagaaatttgtatgttccttatgacaccatttcctcaatacctcaaatagggaagcttacatgtcttgaatatttaagtgcatttaatgtccagggaaaaattggatacactgtgtgtgaactaaagaatttagtacgacttcgtcatcttcatctgcgagatattcagaatattgatacaagggaagttttggatgccaatttgaaagagaagaaacatatgagaaccttatctttgcattggtcttctcatgaggttgttacagagaatacagatgaccaagttcttgatgactttcagccacagtctggtcttgaagggctcaatattatagggttctctggcactaaatttccattctggatgacaaactcatatcttgtaaatattgtttcgctcaagatcatcaattgtggcaaagttgagcatctcccgtcgttagctaacctctgttccctgaagagtctctcttttctacgccttccattattaacaagcatgggcttcttgtttcatgggtgtggcaaggtccttattggctacagtcatccactgatttcatcaccaaaaagtccaactggcatttcagaaggaacagattatattgactctgactcaaaattctttccctctcatctttgtactctggtaattcgaggatgtcctaaactgatggaattgcctaccttacctctgaggctaaagcacctaaaaatattaagttctgggttgatgttccttccaaagatgtaccacaactactacaatagagagggaagtttgccatcactaaatgaatcacaacttacaagcatgcgcattgaagattgcccaaatttgacttcttttgcagactgcttcttacagcagaacttttgtcaagtatctcttagagagatccacatctatcaatgtgaaaaactaaagcatttacctcctaacggctttgcggaattagtaaacctacaaatcctagagatatcagattgtcccatgctcaaggacggtggaatggaagttaagcttcttccatcatctgtggaacagctcaccattagatcctgtggtgaactagaggacatgttagttggttcactggctggacttaaagccctttctaacatttgtttatctcaatgcacccacctgacatctcttgcctcagcaaatacatttgaaactcttacaacactaagggtactgaatatattcaactgtccaaacttgtcatccttgggtggcttacagtgccttgtatttctgagatgtttgaatatcggaagttgcggtagtctgacaaagagtttttcattgcgatctccatctctgtgtcagagtagccaagagagtatgaaaagtttgctaaagattgagacattacgtattgatgaccacactctgctttttgtggaaccgttacgaagcatgcattttactaaggagttgaccatatcggacgatcatgttatgacttcattgcctgatcattggctcctgcagaaccaccttcttcaaaatttgatgatatttaatgcaaaggccctacaatgtcttccttcaagcctggcacatctctgccatctccaaagtttcactctacgcaatgctccccttgtcaactcagttccaaacctccctgcatctctgagcaatctcacccttggaagttgctgcacaatattagctgaccggtgcagaaaaggaggccatgactggagcaagatcgctcatatcccccttgtgaaaatcagtgttatagatgaacaatag
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| CDS seq | atgaaaacgatagcggtaattactaaaattttgcactttattctcatttataatgagaagaaagtgcaaaattgttttgacatatgcatatgggtatccgtgtctagtcatttcaatgcactgtcaataactaaaagtatcattgaggcaatttcaaaagagacccctccagccaacagactggaaactctacatgccatccttgaagataggttaatctctaagagatttttgcttattttggacaatgtttggaatgacaacgatataaatgagtgggagaaattatttgctcccctcagaattggtggaactgggagcattattttggttacgactcggatgaagtcggtaggagatatggctggttatgcccttggactcaaggtgcaacatctgaaattagatggtttattagagaaagatattctgatgctattcaacaagcatgcatttagtgctctcaatctagattgctgcaaaaacttacacttacttggtgaacagattgtgaaaaagattagtggatgtcccttagcagccaaggttataggtgcacatttaagggataatatgaattatatgtactgggagaaaattttgcaggaagacttgcagaatttacaattaggcatggatggcatcatgaaggtccttagattaagctaccatcatctgcctgcaaacctacagctgtgctttagatactgtagtatatttccaccagggtacagatttgggaggaaagagctggtcgagatgtggttgggttcagggatgatttcacaaactgaagatgaaacaaaagctctggaagatattggaggacaatgtttggatcagctggcaagaaaatcattctttgagtttatatcagaagaaatggatggtgtaattgttgaagagtattattctatgcatgacgtattgcatgatttggcacaagttgtttcttctggcgaatgcttgaggattggagttattagatcaatgaagattgcaaaaacagttcgccacttatcagtcagaatagtagattcagttcatctcaaggagctctgccatcttaacaacttgcacagtttagttattgaatttgtcggagatgaccctagtatgagttattcaattgcatttgatgaaattttgaaaagatttaatagcctgcgcctattgtgtgtaactgccaaatgctggtttgacatacctgatactgtttcaaagttagtacaccttcgctacatctccttgtttagcaccaaaagatctttcctagtgtcagtgcataaactgttcagtctttaccatctagaaacactgaagattatggaatattcagaagggaaaatgcttaaactaaatggcatgtgtaatctggtacacttgagaaatttgtatgttccttatgacaccatttcctcaatacctcaaatagggaagcttacatgtcttgaatatttaagtgcatttaatgtccagggaaaaattggatacactgtgtgtgaactaaagaatttagtacgacttcgtcatcttcatctgcgagatattcagaatattgatacaagggaagttttggatgccaatttgaaagagaagaaacatatgagaaccttatctttgcattggtcttctcatgaggttgttacagagaatacagatgaccaagttcttgatgactttcagccacagtctggtcttgaagggctcaatattatagggttctctggcactaaatttccattctggatgacaaactcatatcttgtaaatattgtttcgctcaagatcatcaattgtggcaaagttgagcatctcccgtcgttagctaacctctgttccctgaagagtctctcttttctacgccttccattattaacaagcatgggcttcttgtttcatgggtgtggcaaggtccttattggctacagtcatccactgatttcatcaccaaaaagtccaactggcatttcagaaggaacagattatattgactctgactcaaaattctttccctctcatctttgtactctggtaattcgaggatgtcctaaactgatggaattgcctaccttacctctgaggctaaagcacctaaaaatattaagttctgggttgatgttccttccaaagatgtaccacaactactacaatagagagggaagtttgccatcactaaatgaatcacaacttacaagcatgcgcattgaagattgcccaaatttgacttcttttgcagactgcttcttacagcagaacttttgtcaagtatctcttagagagatccacatctatcaatgtgaaaaactaaagcatttacctcctaacggctttgcggaattagtaaacctacaaatcctagagatatcagattgtcccatgctcaaggacggtggaatggaagttaagcttcttccatcatctgtggaacagctcaccattagatcctgtggtgaactagaggacatgttagttggttcactggctggacttaaagccctttctaacatttgtttatctcaatgcacccacctgacatctcttgcctcagcaaatacatttgaaactcttacaacactaaggagtagccaagagagtatgaaaagtttgctaaagattgagacattacgtattgatgaccacactctgctttttgtggaaccgttacgaagcatgcattttactaaggagttgaccatatcggacgatcatgttatgacttcattgcctgatcattggctcctgcagaaccaccttcttcaaaatttgatgatatttaatgcaaaggccctacaatgtcttccttcaagcctggcacatctctgccatctccaaagtttcactctacgcaatgctccccttgtcaactcagttccaaacctccctgcatctctgagcaatctcacccttggaagttgctgcacaatattagctgaccggtgcagaaaaggaggccatgactggagcaagatcgctcatatcccccttgtgaaaatcagtgttatagatgaacaatag
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| Protein seq | MKTIAVITKILHFILIYNEKKVQNCFDICIWVSVSSHFNALSITKSIIEAISKETPPANRLETLHAILEDRLISKRFLLILDNVWNDNDINEWEKLFAPLRIGGTGSIILVTTRMKSVGDMAGYALGLKVQHLKLDGLLEKDILMLFNKHAFSALNLDCCKNLHLLGEQIVKKISGCPLAAKVIGAHLRDNMNYMYWEKILQEDLQNLQLGMDGIMKVLRLSYHHLPANLQLCFRYCSIFPPGYRFGRKELVEMWLGSGMISQTEDETKALEDIGGQCLDQLARKSFFEFISEEMDGVIVEEYYSMHDVLHDLAQVVSSGECLRIGVIRSMKIAKTVRHLSVRIVDSVHLKELCHLNNLHSLVIEFVGDDPSMSYSIAFDEILKRFNSLRLLCVTAKCWFDIPDTVSKLVHLRYISLFSTKRSFLVSVHKLFSLYHLETLKIMEYSEGKMLKLNGMCNLVHLRNLYVPYDTISSIPQIGKLTCLEYLSAFNVQGKIGYTVCELKNLVRLRHLHLRDIQNIDTREVLDANLKEKKHMRTLSLHWSSHEVVTENTDDQVLDDFQPQSGLEGLNIIGFSGTKFPFWMTNSYLVNIVSLKIINCGKVEHLPSLANLCSLKSLSFLRLPLLTSMGFLFHGCGKVLIGYSHPLISSPKSPTGISEGTDYIDSDSKFFPSHLCTLVIRGCPKLMELPTLPLRLKHLKILSSGLMFLPKMYHNYYNREGSLPSLNESQLTSMRIEDCPNLTSFADCFLQQNFCQVSLREIHIYQCEKLKHLPPNGFAELVNLQILEISDCPMLKDGGMEVKLLPSSVEQLTIRSCGELEDMLVGSLAGLKALSNICLSQCTHLTSLASANTFETLTTLRSSQESMKSLLKIETLRIDDHTLLFVEPLRSMHFTKELTISDDHVMTSLPDHWLLQNHLLQNLMIFNAKALQCLPSSLAHLCHLQSFTLRNAPLVNSVPNLPASLSNLTLGSCCTILADRCRKGGHDWSKIAHIPLVKISVIDEQ |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0012760 | OsLima_06g0012760.01 | Chr06 | 11629742 | 11632897 | + | NAM | ||
| CDS seq | atgaaaacgatagcggtaattactaaaattttgcactttattctcatttataatgagaagaaagtgcaaaattgttttgacatatgcatatgggtatccgtgtctagtcatttcaatgcactgtcaataactaaaagtatcattgaggcaatttcaaaagagacccctccagccaacagactggaaactctacatgccatccttgaagataggttaatctctaagagatttttgcttattttggacaatgtttggaatgacaacgatataaatgagtgggagaaattatttgctcccctcagaattggtggaactgggagcattattttggttacgactcggatgaagtcggtaggagatatggctggttatgcccttggactcaaggtgcaacatctgaaattagatggtttattagagaaagatattctgatgctattcaacaagcatgcatttagtgctctcaatctagattgctgcaaaaacttacacttacttggtgaacagattgtgaaaaagattagtggatgtcccttagcagccaaggttataggtgcacatttaagggataatatgaattatatgtactgggagaaaattttgcaggaagacttgcagaatttacaattaggcatggatggcatcatgaaggtccttagattaagctaccatcatctgcctgcaaacctacagctgtgctttagatactgtagtatatttccaccagggtacagatttgggaggaaagagctggtcgagatgtggttgggttcagggatgatttcacaaactgaagatgaaacaaaagctctggaagatattggaggacaatgtttggatcagctggcaagaaaatcattctttgagtttatatcagaagaaatggatggtgtaattgttgaagagtattattctatgcatgacgtattgcatgatttggcacaagttgtttcttctggcgaatgcttgaggattggagttattagatcaatgaagattgcaaaaacagttcgccacttatcagtcagaatagtagattcagttcatctcaaggagctctgccatcttaacaacttgcacagtttagttattgaatttgtcggagatgaccctagtatgagttattcaattgcatttgatgaaattttgaaaagatttaatagcctgcgcctattgtgtgtaactgccaaatgctggtttgacatacctgatactgtttcaaagttagtacaccttcgctacatctccttgtttagcaccaaaagatctttcctagtgtcagtgcataaactgttcagtctttaccatctagaaacactgaagattatggaatattcagaagggaaaatgcttaaactaaatggcatgtgtaatctggtacacttgagaaatttgtatgttccttatgacaccatttcctcaatacctcaaatagggaagcttacatgtcttgaatatttaagtgcatttaatgtccagggaaaaattggatacactgtgtgtgaactaaagaatttagtacgacttcgtcatcttcatctgcgagatattcagaatattgatacaagggaagttttggatgccaatttgaaagagaagaaacatatgagaaccttatctttgcattggtcttctcatgaggttgttacagagaatacagatgaccaagttcttgatgactttcagccacagtctggtcttgaagggctcaatattatagggttctctggcactaaatttccattctggatgacaaactcatatcttgtaaatattgtttcgctcaagatcatcaattgtggcaaagttgagcatctcccgtcgttagctaacctctgttccctgaagagtctctcttttctacgccttccattattaacaagcatgggcttcttgtttcatgggtgtggcaaggtccttattggctacagtcatccactgatttcatcaccaaaaagtccaactggcatttcagaaggaacagattatattgactctgactcaaaattctttccctctcatctttgtactctggtaattcgaggatgtcctaaactgatggaattgcctaccttacctctgaggctaaagcacctaaaaatattaagttctgggttgatgttccttccaaagatgtaccacaactactacaatagagagggaagtttgccatcactaaatgaatcacaacttacaagcatgcgcattgaagattgcccaaatttgacttcttttgcagactgcttcttacagcagaacttttgtcaagtatctcttagagagatccacatctatcaatgtgaaaaactaaagcatttacctcctaacggctttgcggaattagtaaacctacaaatcctagagatatcagattgtcccatgctcaaggacggtggaatggaagttaagcttcttccatcatctgtggaacagctcaccattagatcctgtggtgaactagaggacatgttagttggttcactggctggacttaaagccctttctaacatttgtttatctcaatgcacccacctgacatctcttgcctcagcaaatacatttgaaactcttacaacactaaggagtagccaagagagtatgaaaagtttgctaaagattgagacattacgtattgatgaccacactctgctttttgtggaaccgttacgaagcatgcattttactaaggagttgaccatatcggacgatcatgttatgacttcattgcctgatcattggctcctgcagaaccaccttcttcaaaatttgatgatatttaatgcaaaggccctacaatgtcttccttcaagcctggcacatctctgccatctccaaagtttcactctacgcaatgctccccttgtcaactcagttccaaacctccctgcatctctgagcaatctcacccttggaagttgctgcacaatattagctgaccggtgcagaaaaggaggccatgactggagcaagatcgctcatatcccccttgtgaaaatcagtgttatagatgaacaatag
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| Protein seq | MKTIAVITKILHFILIYNEKKVQNCFDICIWVSVSSHFNALSITKSIIEAISKETPPANRLETLHAILEDRLISKRFLLILDNVWNDNDINEWEKLFAPLRIGGTGSIILVTTRMKSVGDMAGYALGLKVQHLKLDGLLEKDILMLFNKHAFSALNLDCCKNLHLLGEQIVKKISGCPLAAKVIGAHLRDNMNYMYWEKILQEDLQNLQLGMDGIMKVLRLSYHHLPANLQLCFRYCSIFPPGYRFGRKELVEMWLGSGMISQTEDETKALEDIGGQCLDQLARKSFFEFISEEMDGVIVEEYYSMHDVLHDLAQVVSSGECLRIGVIRSMKIAKTVRHLSVRIVDSVHLKELCHLNNLHSLVIEFVGDDPSMSYSIAFDEILKRFNSLRLLCVTAKCWFDIPDTVSKLVHLRYISLFSTKRSFLVSVHKLFSLYHLETLKIMEYSEGKMLKLNGMCNLVHLRNLYVPYDTISSIPQIGKLTCLEYLSAFNVQGKIGYTVCELKNLVRLRHLHLRDIQNIDTREVLDANLKEKKHMRTLSLHWSSHEVVTENTDDQVLDDFQPQSGLEGLNIIGFSGTKFPFWMTNSYLVNIVSLKIINCGKVEHLPSLANLCSLKSLSFLRLPLLTSMGFLFHGCGKVLIGYSHPLISSPKSPTGISEGTDYIDSDSKFFPSHLCTLVIRGCPKLMELPTLPLRLKHLKILSSGLMFLPKMYHNYYNREGSLPSLNESQLTSMRIEDCPNLTSFADCFLQQNFCQVSLREIHIYQCEKLKHLPPNGFAELVNLQILEISDCPMLKDGGMEVKLLPSSVEQLTIRSCGELEDMLVGSLAGLKALSNICLSQCTHLTSLASANTFETLTTLRSSQESMKSLLKIETLRIDDHTLLFVEPLRSMHFTKELTISDDHVMTSLPDHWLLQNHLLQNLMIFNAKALQCLPSSLAHLCHLQSFTLRNAPLVNSVPNLPASLSNLTLGSCCTILADRCRKGGHDWSKIAHIPLVKISVIDEQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0304700 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g20050 | SBH | 0.0 | 0.087366 | 0.039846 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0304700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012640 | SBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0012490 | RBH | 0.036820 | 0.921619 | 0.294169 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012540 | SBH | 0.0 | 1.070570 | 0.635868 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012590 | SBH | 0.0 | 0.014162 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012730 | SBH | 0.293478 | 0.0 | 0.475506 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0187900 | SBH | 0.129702 | 0.822154 | 0.477526 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0012180 | SBH | 0.0 | 0.0 | 0.172757 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0184200 | SBH | 0.3752005 | 0.7096645 | 5.526922 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012750 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0012630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0012360 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012840 | SBH | 0.000000 | 0.114635 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0012510 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G012320 | SBH | 0.0 | 0.854192 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012660 | SBH | 0.0 | 3.793306 | 0.282684 |
