Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0012210 | OGI:06030770 | 9/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:10981195-10981618 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caggctgacacccccacaggatgtggacgctgggctggaagacaacgaagctagccggaacgcgagttccagatctggagctatggtgacaccgagcatggaagtggcatagctccggtggcgaacgcgggcgagtgagcgtgtcaaaacgggttcccggatgagaaggttccatttttgtggttagttgatatagatgaggcgccggaaaaactgaccacggtggtagccatggtggtggacaggagcacgatgggagctcgacacaagcaaggaaagaaggggaaaaaggttggggaagttctcatcgatgagaggtgttcctgcggtgccgtggtgcggtggcagaagatcgacgccggcgaaacggctgcacagccggacttggctctggcaggagaagttttgggatgaaaacgagatt
More
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| CDS seq | atggtggtggacaggagcacgatgggagctcgacacaagcaaggaaagaaggggaaaaaggttggggaagttctcatcgatgagaggtgttcctgcggtgccgtggtgcggtggcagaagatcgacgccggcgaaacggctgcacagccggacttggctctggcaggagaagttttgggatga |
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| Protein seq | MVVDRSTMGARHKQGKKGKKVGEVLIDERCSCGAVVRWQKIDAGETAAQPDLALAGEVLG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0012210 | OsLima_06g0012210.01 | Chr06 | 10981195 | 10981618 | + | NAM | ||
| CDS seq | atggtggtggacaggagcacgatgggagctcgacacaagcaaggaaagaaggggaaaaaggttggggaagttctcatcgatgagaggtgttcctgcggtgccgtggtgcggtggcagaagatcgacgccggcgaaacggctgcacagccggacttggctctggcaggagaagttttgggatga |
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| Protein seq | MVVDRSTMGARHKQGKKGKKVGEVLIDERCSCGAVVRWQKIDAGETAAQPDLALAGEVLG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.195387 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g03040 | SBH | 0.026244 | 0.0 | 0.039417 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012110 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0000890 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012020 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0001000 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0018500 | SBH | 0 | 0 | 0.439324 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0000990 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0028900 | SBH | 0 | 0 | 0.0488375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0000940 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0012060 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0001030 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012280 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011950 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011820 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012160 | RBH | 0.0 | 0.0 | 0.0 |
