Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0012200 | OGI:06030730 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:10952267-10954280 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tagtagaatgggatacaaagagttatcaggcttatttaaatttatttcagtatgataggttccctagtccctaaagatctcatgtactatgacacttacaaacaatggattactggatgaaattaaccgaatataactcatatttccttgggtatggctttgagggggttgactagagataacaccaccccacacttctccgtcatgtctatcccaccctcctttgcatccgccggaagctcccactcgaaccgatggagtagcgtgccgatgatgaggggtatgagcttctgcgcaagcggcatcccggggcagatgcgccggccgaggccgaaggggatcatttcgaagtcttggcccagatatcccctagtctcgccaccgaggaacctctctggtatgaacttgtccggctccgaccacgcgtcggcactccggttgatcgcccacgcgttgaggatcacgttggtccccttggggatcctatagccgttcacctcgatgtcgacctcagccttgcggggtaccaagggtaccaccgttcggagacgaagggtctccttgacgacagcttgaaggtaggggaggcgggcaatgtcggattcgtccatcaccagcttgtccccgagaacattggtaagctcttcccttaccttggtcatcacctctgggttctggattagatccaccattccccactcgattagcgctgctgtcgtgcttgctccagcgccgtataaatcctgatcaatcataaattataataggttaattagttagttaataatcaccacatccaacaaaagagggtacatttattagagagtttaaaatctactccctccctataaaataaataaacctagtatagatatgacacgtttaaattcatagtactaaaatgtgtttttattttgggacggagagattatatgcgcatgcatagagatgaggtaggtaacatacggagaggagaactcgcatgacgtcatggcttagcagggagccctcctgcttccactcgctctcctccttgtcgaggacggtgtcgagcacgtcgttcttgcgcgcctcgccggcgtcccggctgcgccgccgcagggcgacctggtcgtcgaagtggcggtacatgatggtgaggaggtcggtcatcctgcggcggaggccctggaggtcgagcgcggccaccggcgggaacacgtcggagacgttcgccgtccccagcatcccgacgatctcctcaatgaggtccctgaacatggcgcgctcctcgcgctccaggtcggtggagtagagcacgccgaggaggaggctcagaatggagtcgagcaccgcgtgcctgaacaccacggcggcgccccgcgccgcgtgcccggacacctcgcggcggagcgcctccacgatcttggtctgcagctgcgcgccggccgccgcggacgagatccgccgcggcgcgagcatctcggcggcggcgaacttgcggagcgcgcgccacttgccgtcctggctcgggagcgcgaagatggtgtgcgcgcggtggcccatggcgctgagcacgtcgaggctcgggaggcccgcgatgccatccaccttcttgccttccccgccgccgccgccgccggcgccggcggcggcgaacaccgcgcgcagggcgtccggggtggagacgatcacgtggggcaccatgccgaagcggaggcacatgaggccgccgtagcggccggcgaggcggaggaacgtgcggtgctgcttgccgtcctcgccgaggtcgaggaggtcgccgacgagcggcttcggcggccagggacccggggggaggcggcggcgggcgtcgcggagaagctggaagatgtacagggagaagaggacgacgacaagccatgacaggcactcaacgaggaaggtggaggccgccattttcgcagcagctagctcgatcgatcgccaaggatcgatcgatgcaacttgtgtgagtaagctatagcacacaggcactgcgacacatttatagtga
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| CDS seq | atggcggcctccaccttcctcgttgagtgcctgtcatggcttgtcgtcgtcctcttctccctgtacatcttccagcttctccgcgacgcccgccgccgcctccccccgggtccctggccgccgaagccgctcgtcggcgacctcctcgacctcggcgaggacggcaagcagcaccgcacgttcctccgcctcgccggccgctacggcggcctcatgtgcctccgcttcggcatggtgccccacgtgatcgtctccaccccggacgccctgcgcgcggtgttcgccgccgccggcgccggcggcggcggcggcggggaaggcaagaaggtggatggcatcgcgggcctcccgagcctcgacgtgctcagcgccatgggccaccgcgcgcacaccatcttcgcgctcccgagccaggacggcaagtggcgcgcgctccgcaagttcgccgccgccgagatgctcgcgccgcggcggatctcgtccgcggcggccggcgcgcagctgcagaccaagatcgtggaggcgctccgccgcgaggtgtccgggcacgcggcgcggggcgccgccgtggtgttcaggcacgcggtgctcgactccattctgagcctcctcctcggcgtgctctactccaccgacctggagcgcgaggagcgcgccatgttcagggacctcattgaggagatcgtcgggatgctggggacggcgaacgtctccgacgtgttcccgccggtggccgcgctcgacctccagggcctccgccgcaggatgaccgacctcctcaccatcatgtaccgccacttcgacgaccaggtcgccctgcggcggcgcagccgggacgccggcgaggcgcgcaagaacgacgtgctcgacaccgtcctcgacaaggaggagagcgagtggaagcaggagggctccctgctaagccatgacgatttatacggcgctggagcaagcacgacagcagcgctaatcgagtggggaatggtggatctaatccagaacccagaggtgatgaccaaggtaagggaagagcttaccaatgttctcggggacaagctggtgatggacgaatccgacattgcccgcctcccctaccttcaagctgtcgtcaaggagacccttcgtctccgaacggtggtacccttggtaccccgcaaggctgaggtcgacatcgaggtgaacggctataggatccccaaggggaccaacgtgatcctcaacgcgtgggcgatcaaccggagtgccgacgcgtggtcggagccggacaagttcataccagagaggttcctcggtggcgagactaggggatatctgggccaagacttcgaaatgatccccttcggcctcggccggcgcatctgccccgggatgccgcttgcgcagaagctcatacccctcatcatcggcacgctactccatcggttcgagtgggagcttccggcggatgcaaaggagggtgggatagacatgacggagaagtgtggggtggtgttatctctagtcaaccccctcaaagccatacccaaggaaatatga
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| Protein seq | MAASTFLVECLSWLVVVLFSLYIFQLLRDARRRLPPGPWPPKPLVGDLLDLGEDGKQHRTFLRLAGRYGGLMCLRFGMVPHVIVSTPDALRAVFAAAGAGGGGGGEGKKVDGIAGLPSLDVLSAMGHRAHTIFALPSQDGKWRALRKFAAAEMLAPRRISSAAAGAQLQTKIVEALRREVSGHAARGAAVVFRHAVLDSILSLLLGVLYSTDLEREERAMFRDLIEEIVGMLGTANVSDVFPPVAALDLQGLRRRMTDLLTIMYRHFDDQVALRRRSRDAGEARKNDVLDTVLDKEESEWKQEGSLLSHDDLYGAGASTTAALIEWGMVDLIQNPEVMTKVREELTNVLGDKLVMDESDIARLPYLQAVVKETLRLRTVVPLVPRKAEVDIEVNGYRIPKGTNVILNAWAINRSADAWSEPDKFIPERFLGGETRGYLGQDFEMIPFGLGRRICPGMPLAQKLIPLIIGTLLHRFEWELPADAKEGGIDMTEKCGVVLSLVNPLKAIPKEI |
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| Function | Cytochrome P450 76C4 [UniProtKB/Swiss-Prot:O64635] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0012200 | OsLima_06g0012200.01 | Chr06 | 10952267 | 10954280 | - | NAM | ||
| CDS seq | atggcggcctccaccttcctcgttgagtgcctgtcatggcttgtcgtcgtcctcttctccctgtacatcttccagcttctccgcgacgcccgccgccgcctccccccgggtccctggccgccgaagccgctcgtcggcgacctcctcgacctcggcgaggacggcaagcagcaccgcacgttcctccgcctcgccggccgctacggcggcctcatgtgcctccgcttcggcatggtgccccacgtgatcgtctccaccccggacgccctgcgcgcggtgttcgccgccgccggcgccggcggcggcggcggcggggaaggcaagaaggtggatggcatcgcgggcctcccgagcctcgacgtgctcagcgccatgggccaccgcgcgcacaccatcttcgcgctcccgagccaggacggcaagtggcgcgcgctccgcaagttcgccgccgccgagatgctcgcgccgcggcggatctcgtccgcggcggccggcgcgcagctgcagaccaagatcgtggaggcgctccgccgcgaggtgtccgggcacgcggcgcggggcgccgccgtggtgttcaggcacgcggtgctcgactccattctgagcctcctcctcggcgtgctctactccaccgacctggagcgcgaggagcgcgccatgttcagggacctcattgaggagatcgtcgggatgctggggacggcgaacgtctccgacgtgttcccgccggtggccgcgctcgacctccagggcctccgccgcaggatgaccgacctcctcaccatcatgtaccgccacttcgacgaccaggtcgccctgcggcggcgcagccgggacgccggcgaggcgcgcaagaacgacgtgctcgacaccgtcctcgacaaggaggagagcgagtggaagcaggagggctccctgctaagccatgacgatttatacggcgctggagcaagcacgacagcagcgctaatcgagtggggaatggtggatctaatccagaacccagaggtgatgaccaaggtaagggaagagcttaccaatgttctcggggacaagctggtgatggacgaatccgacattgcccgcctcccctaccttcaagctgtcgtcaaggagacccttcgtctccgaacggtggtacccttggtaccccgcaaggctgaggtcgacatcgaggtgaacggctataggatccccaaggggaccaacgtgatcctcaacgcgtgggcgatcaaccggagtgccgacgcgtggtcggagccggacaagttcataccagagaggttcctcggtggcgagactaggggatatctgggccaagacttcgaaatgatccccttcggcctcggccggcgcatctgccccgggatgccgcttgcgcagaagctcatacccctcatcatcggcacgctactccatcggttcgagtgggagcttccggcggatgcaaaggagggtgggatagacatgacggagaagtgtggggtggtgttatctctagtcaaccccctcaaagccatacccaaggaaatatga
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| Protein seq | MAASTFLVECLSWLVVVLFSLYIFQLLRDARRRLPPGPWPPKPLVGDLLDLGEDGKQHRTFLRLAGRYGGLMCLRFGMVPHVIVSTPDALRAVFAAAGAGGGGGGEGKKVDGIAGLPSLDVLSAMGHRAHTIFALPSQDGKWRALRKFAAAEMLAPRRISSAAAGAQLQTKIVEALRREVSGHAARGAAVVFRHAVLDSILSLLLGVLYSTDLEREERAMFRDLIEEIVGMLGTANVSDVFPPVAALDLQGLRRRMTDLLTIMYRHFDDQVALRRRSRDAGEARKNDVLDTVLDKEESEWKQEGSLLSHDDLYGAGASTTAALIEWGMVDLIQNPEVMTKVREELTNVLGDKLVMDESDIARLPYLQAVVKETLRLRTVVPLVPRKAEVDIEVNGYRIPKGTNVILNAWAINRSADAWSEPDKFIPERFLGGETRGYLGQDFEMIPFGLGRRICPGMPLAQKLIPLIIGTLLHRFEWELPADAKEGGIDMTEKCGVVLSLVNPLKAIPKEI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0012200 | OsLima_06g0012200.02 | Chr06 | 10952276 | 10954241 | - | IsoSeq | ||
| CDS seq | atggcttgtcgtcgtcctcttctccctgtacatcttccagcttctccgcgacgcccgccgccgcctccccccgggtccctggccgccgaagccgctcgtcggcgacctcctcgacctcggcgaggacggcaagcagcaccgcacgttcctccgcctcgccggccgctacggcggcctcatgtgcctccgcttcggcatggtgccccacgtgatcgtctccaccccggacgccctgcgcgcggtgttcgccgccgccggcgccggcggcggcggcggcggggaaggcaagaaggtggatggcatcgcgggcctcccgagcctcgacgtgctcagcgccatgggccaccgcgcgcacaccatcttcgcgctcccgagccaggacggcaagtggcgcgcgctccgcaagttcgccgccgccgagatgctcgcgccgcggcggatctcgtccgcggcggccggcgcgcagctgcagaccaagatcgtggaggcgctccgccgcgaggtgtccgggcacgcggcgcggggcgccgccgtggtgttcaggcacgcggtgctcgactccattctgagcctcctcctcggcgtgctctactccaccgacctggagcgcgaggagcgcgccatgttcagggacct
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| Protein seq | MACRRPLLPVHLPASPRRPPPPPPGSLAAEAARRRPPRPRRGRQAAPHVPPPRRPLRRPHVPPLRHGAPRDRLHPGRPARGVRRRRRRRRRRRGRQEGGWHRGPPEPRRAQRHGPPRAHHLRAPEPGRQVARAPQVRRRRDARAAADLVRGGRRAAADQDRGGAPPRGVRARGAGRRRGVQARGARLHSEPPPRRALLHRPGARGARHVQGP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr06 | 10953009 | 10953254 | - | OsLima_06g0012200.02 | OsLima_06g0012200.02,OsLima_06g0012200.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.315680 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0294600 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g19070 | RBH | 0.087914 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0294600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012100 | RBH | 0.0 | 5.865686 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011970 | RBH | 0.0 | 2.416000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012010 | RBH | 0.0 | 10.168176 | 0.374065 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012060 | RBH | 0.000000 | 0.261945 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012170 | RBH | 0.0 | 39.423939 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0177600 | RBH | 2.5732475 | 16.18215 | 0.367168 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011640 | RBH | 0.055384 | 1.889770 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0172900 | RBH | 2.9271535 | 8.901524 | 0.237956 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0012050 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011870 | RBH | 0.0 | 14.173791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012270 | RBH | 0.505431 | 1.067470 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011930 | RBH | 0.165037 | 22.943523 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011810 | RBH | 0.088578 | 0.812233 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012150 | RBH | 0.0 | 27.246143 | 0.0 |
