Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0011690 | OGI:06028900 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:10372784-10373946 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaagcctaaatagagtgagatacaattacatggctcagtaattacaacctaggaattatatatagattccaagaataagaatatatggccaagtaggatacagatattttctcaacctatataaaaccagaaaacacaaacaagactcatatatccacccaataattgataatgcacccaataattgatgtggatactgagtaatctctcgctcgatgctactcatatgcatccagatttttttaaagaaaactgagcaatttcctgttggacgtctgcgtttactgcctttaccacgacggaaggtaattctttgcccgcgggaggcaaaggcgcaagcagttacacgctggacgcgcgcttaggagcagcaggtgcttcagtgcccgcttgcgccaccgtcgtcgcgtcgtccttggcggcggcggcgccgacgcagcaagaatggcaccggtgaagattcagaagctcgacgagctccaggcggtgggaggggcaccggctgctccggatccagaagtggagcagcaggtgggcgacgaggtaggcggcgatgacggccacgagggccagcacgaacgccgacgtcctcacgctccggcatccccccgccgcgaaggcgcccaggaggccgatcaggtcgagcgccatggccgcctgcagcgcccgcaccctgtacccgtggaagctgaaggtgctgctcagcagcagcatggtgatcaccagagacgccacgaacgccgtcgcgttgcagtagaagaacacgctgtaccgcaccgggtagcgcgcctgtgtgtgtcagatgagcatgaactagattaaattcagtccaacgacagttgatcatgtgcacacaaattagttgatgtttgggcgcgcacacctggagaacggggtcgccggcgacgtggccgtcggcgtcgtcggcccagacgccgccgggcggggcgaggccggcgttgtaggtgacggtggcggcgaggatggcgaggaggaggaggctcttgtgcatcttctccagtatgcccttgttatgctgatccagctctggatccgtcgacgacgacgacgacgaacgtccaccgtgctccggcgccgcctccatggccggtggatggtttggcgccatatgcttgtgcatgcgacgatcgaacaatatactt
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| CDS seq | atgcacaagcatatggcgccaaaccatccaccggccatggaggcggcgccggagcacggtggacgttcgtcgtcgtcgtcgtcgacggatccagagctggatcagcataacaagggcatactggagaagatgcacaagagcctcctcctcctcgccatcctcgccgccaccgtcacctacaacgccggcctcgccccgcccggcggcgtctgggccgacgacgccgacggccacgtcgccggcgaccccgttctccaggcgcgctacccggtgcggtacagcgtgttcttctactgcaacgcgacggcgttcgtggcgtctctggtgatcaccatgctgctgctgagcagcaccttcagcttccacgggtacagggtgcgggcgctgcaggcggccatggcgctcgacctgatcggcctcctgggcgccttcgcggcggggggatgccggagcgtgaggacgtcggcgttcgtgctggccctcgtggccgtcatcgccgcctacctcgtcgcccacctgctgctccacttctggatccggagcagccggtgcccctcccaccgcctggagctcgtcgagcttctgaatcttcaccggtgccattcttgctgcgtcggcgccgccgccgccaaggacgacgcgacgacggtggcgcaagcgggcactgaagcacctgctgctcctaagcgcgcgtccagcgtgtaa
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| Protein seq | MHKHMAPNHPPAMEAAPEHGGRSSSSSSTDPELDQHNKGILEKMHKSLLLLAILAATVTYNAGLAPPGGVWADDADGHVAGDPVLQARYPVRYSVFFYCNATAFVASLVITMLLLSSTFSFHGYRVRALQAAMALDLIGLLGAFAAGGCRSVRTSAFVLALVAVIAAYLVAHLLLHFWIRSSRCPSHRLELVELLNLHRCHSCCVGAAAAKDDATTVAQAGTEAPAAPKRASSV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0011690 | OsLima_06g0011690.01 | Chr06 | 10372784 | 10373946 | - | NAM | ||
| CDS seq | atgcacaagcatatggcgccaaaccatccaccggccatggaggcggcgccggagcacggtggacgttcgtcgtcgtcgtcgtcgacggatccagagctggatcagcataacaagggcatactggagaagatgcacaagagcctcctcctcctcgccatcctcgccgccaccgtcacctacaacgccggcctcgccccgcccggcggcgtctgggccgacgacgccgacggccacgtcgccggcgaccccgttctccaggcgcgctacccggtgcggtacagcgtgttcttctactgcaacgcgacggcgttcgtggcgtctctggtgatcaccatgctgctgctgagcagcaccttcagcttccacgggtacagggtgcgggcgctgcaggcggccatggcgctcgacctgatcggcctcctgggcgccttcgcggcggggggatgccggagcgtgaggacgtcggcgttcgtgctggccctcgtggccgtcatcgccgcctacctcgtcgcccacctgctgctccacttctggatccggagcagccggtgcccctcccaccgcctggagctcgtcgagcttctgaatcttcaccggtgccattcttgctgcgtcggcgccgccgccgccaaggacgacgcgacgacggtggcgcaagcgggcactgaagcacctgctgctcctaagcgcgcgtccagcgtgtaa
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| Protein seq | MHKHMAPNHPPAMEAAPEHGGRSSSSSSTDPELDQHNKGILEKMHKSLLLLAILAATVTYNAGLAPPGGVWADDADGHVAGDPVLQARYPVRYSVFFYCNATAFVASLVITMLLLSSTFSFHGYRVRALQAAMALDLIGLLGAFAAGGCRSVRTSAFVLALVAVIAAYLVAHLLLHFWIRSSRCPSHRLELVELLNLHRCHSCCVGAAAAKDDATTVAQAGTEAPAAPKRASSV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0285900 | SBH | 0.229028 | 0.163248 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g17560 | SBH | 0.474454 | 0.240671 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0285900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012050 | RBH | 0.133869 | 0.0 | 0.301377 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011930 | SBH | 0.482225 | 0.181619 | 0.324184 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0011960 | SBH | 0.357941 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012010 | SBH | 0.067927 | 0.060134 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012120 | SBH | 5.457470 | 3.038267 | 1.581776 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0176900 | SBH | 4.1231745 | 0.305001 | 0.0181225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011200 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0172500 | RBH | 5.147779 | 0.1347395 | 0.460024 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012140 | SBH | 0.098548 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011540 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011830 | SBH | 3.431504 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012220 | SBH | 0.047769 | 0.339193 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011880 | SBH | 0.694646 | 1.647784 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011760 | SBH | 0.158342 | 0.561815 | 0.361347 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012100 | RBH | 0.185697 | 0.682975 | 0.635394 |
