Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0010670 | OGI:06024110 | 6/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:9091661-9092493 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcggttgcacagcctcctgcacacgcttgcggccggaggagtgcttgttgtggggctcggagtggctggtgggagcacggtggcgcggaggccgcctcctctgctgttcggcgatgggcggcgatggccattgtcccggttctactgctccaagggcgggcggcgtccggctaggaattgcgattgtgacgacggccgccatcttcgctccctgccacggccgcgtctccgcggctcgccgttgttgccgctccagcgacggccgagctgtcctggccggaggagcgaatgggcgaagcaactttcccggtgggcgactgggcgagcggatgcgctgcttcttgtagtccagccagtcgatgcctacatggttgaacacaatataatatatatatatatatataatgcaagaaagaacgaaagaagttaggaatcgaacgaatagagatagagattattagcgaagaacaaaaaaagtagtagtatcgtcttttgcagcgaggtcgatcatgatgtcgccgatgcccttctccatgcccttgagaccgcacatgtagacgtaggtgttgtcctttttgagcagctcccgggcgggattggccatggcgaacggcccgtggggcgcgcttgggcaggcgttgagggtggcgcagctggtcggcgtggacgcgctggggctggtctccatggtcgtgcaggcggcgctggcggtgcaccgctgggacgcgtgccggcggctggggcagcacgtggagctcgtcggcggcctgcatgctgtgggagctcgagctcgccgagctgatgcggcgggatgccactaggcggcccctc
More
|
||||||||||
| CDS seq | atgcggttgcacagcctcctgcacacgcttgcggccggaggagtgcttgttgtggggctcggagtggctggtgggagcacggtggcgcggaggccgcctcctctgctgttcggcgatgggcggcgatggccattgtcccggttctactgctccaagggcgggcggcgtccggctaggaattgcgattgtgacgacggccgccatcttcgctccctgccacggccgcgtctccgcggctcgccgttgttgccgctccagcgacggccgagctgtcctggccggaggagcgaatgggcgaagcaactttcccggtgggcgactgggcgagcggatgcgctgcttcttgtagtgttgtcctttttgagcagctcccgggcgggattggccatggcgaacggcccgtggggcgcgcttgggcaggcgttgagggtggcgcagctggtcggcgtggacgcgctggggctggtctccatggtcgtgcaggcggcgctggcggtgcaccgctgggacgcgtgccggcggctggggcagcacgtggagctcgtcggcggcctgcatgctgtgggagctcgagctcgccgagctgatgcggcgggatgccactag
More
|
||||||||||
| Protein seq | MRLHSLLHTLAAGGVLVVGLGVAGGSTVARRPPPLLFGDGRRWPLSRFYCSKGGRRPARNCDCDDGRHLRSLPRPRLRGSPLLPLQRRPSCPGRRSEWAKQLSRWATGRADALLLVVLSFLSSSRAGLAMANGPWGALGQALRVAQLVGVDALGLVSMVVQAALAVHRWDACRRLGQHVELVGGLHAVGARARRADAAGCH |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0010670 | OsLima_06g0010670.01 | Chr06 | 9091661 | 9092493 | + | NAM | ||
| CDS seq | atgcggttgcacagcctcctgcacacgcttgcggccggaggagtgcttgttgtggggctcggagtggctggtgggagcacggtggcgcggaggccgcctcctctgctgttcggcgatgggcggcgatggccattgtcccggttctactgctccaagggcgggcggcgtccggctaggaattgcgattgtgacgacggccgccatcttcgctccctgccacggccgcgtctccgcggctcgccgttgttgccgctccagcgacggccgagctgtcctggccggaggagcgaatgggcgaagcaactttcccggtgggcgactgggcgagcggatgcgctgcttcttgtagtgttgtcctttttgagcagctcccgggcgggattggccatggcgaacggcccgtggggcgcgcttgggcaggcgttgagggtggcgcagctggtcggcgtggacgcgctggggctggtctccatggtcgtgcaggcggcgctggcggtgcaccgctgggacgcgtgccggcggctggggcagcacgtggagctcgtcggcggcctgcatgctgtgggagctcgagctcgccgagctgatgcggcgggatgccactag
More
|
|||||||
| Protein seq | MRLHSLLHTLAAGGVLVVGLGVAGGSTVARRPPPLLFGDGRRWPLSRFYCSKGGRRPARNCDCDDGRHLRSLPRPRLRGSPLLPLQRRPSCPGRRSEWAKQLSRWATGRADALLLVVLSFLSSSRAGLAMANGPWGALGQALRVAQLVGVDALGLVSMVVQAALAVHRWDACRRLGQHVELVGGLHAVGARARRADAAGCH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g15260 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0008600 | SBH | 0.469536 | 3.132538 | 2.757881 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0008460 | SBH | 0.080150 | 0.876566 | 1.488599 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0008470 | SBH | 0.520273 | 5.276272 | 5.401687 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0008590 | SBH | 0.044041 | 0.459601 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027090 | SBH | 0.000000 | 0.000000 | 2.096012 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0143100 | RBH | 0 | 0 | 0.054038 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026500 | SBH | 0.0 | 0.136337 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0108700 | SBH | 4.9869545 | 16.00261 | 10.7418475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0008470 | SBH | 0.142157 | 11.741285 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0010560 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0008590 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0010440 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G008300 | SBH | 0.343681 | 5.645348 | 3.276383 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0008590 | SBH | 2.142447 | 10.489040 | 5.507257 |
