Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsLima_06g0009950 | OGI:06021720 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:7969382-7972324 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | tcacttcccagtactagctaggcctttcctaactgatgtctttgacgcctttgcatggaccccaggcttgcgtcttgttgaaactggtctcccttgcttttgtatgatgggggggtcatttatttgtagtgttgggttagttgatgccgaggggatatctgaaactcctcttgcaggatcagctggggctggctgtgcttttttctgtttctttctactctgcttcatagctgctaagtcatcagtcattgagctcatacgctgtagagccatacggtaggctttctcgttgcttgatgcatcttttgcaatctgtgtaaattttgtgcacagattggtatagctgattagcttcagagattcagggggcaattgcatttgttcaccaatgcttgtaactggaggcaattcaggctctttaaccatcgtccatctaggcaatatgtagtgttctggaatgtcactcacttggcccacaaaatcagatgccatcacctgcatggaaaaaaacatatgttttatcacatgccaaaagtgcttaatgcataagaagtaatttaatgcacattaagaagtaacttaatgtgcagtaagaagtagcttaatacaaagtgagaagtagcttactgcaataacagactgttaccttcaaaacatgacaccaaagaatgccatccctttcgaacttacagcattcacagttgtatatcctgtccaacacatttgcagctagaatgaatgtccttgatccataattcctaacaggacctccattcggttctactagatacatgttttcagaagttcgggtcaatttatatgatgttgaagcaatcagctctttttgaaatctgttgaatataggccttgtgtagacctccaatgcttttgttttcatgggatagttagcccacatagaagggattgtttcttctgcttcaaactcattctgatctgttgcaacagtgattttttcttgaatcttcttgtactgcaaaaagaagttgtatatgctgttttggggatttacatagcgcttcagcactgcgttaaatccctcactccgtgctgtagtctggaggaaagggaagaaacaatgcataaagtatgctgggacccaacactgtcaacattgcatcccatttagcatcaaactcttgctctgtccagctgttgttaaggcagtcattgaatgcatcacacaatgctttgtcatgatctaatatatggccaatcttcttctgagcattctgcattatatgccagcggcagttgcgatgcttagcatgtgggaaaactagtgctatagctgccttcatagctaggtcttgatcagttattatgtttatgggctctacaccttccatagcctctagaaattcttgaaacaaccatacaaaggtttctgtcttttcattccttagaaatccacaacccagctgaatataaaaaaaatacacgtaaggaagtcagtacagttttgaagcaagtaagttactacaattttgcgtagtctgtacagtttgtgtttgctagaagtaaatcagtacaattttgaactatagaacagacactaaaagatgtaacttgtaaacttagttacttttttactttttttaaaaaaaaatgtaacttcacattctactggaagtaacttttatcaggacttgatgtaactcaatgaatgcaacaagtaacttatggtgtactataatgtacaaagttattacagattttttagaattacttttttgcaaaaaaaggagtacctgtattgattgcccatgtctgtttatcccaataaatggtgcacaaggcatgttatacatgttcgtcatgtatgtgcagtcaaacgagatgcaatctttgaagtctttgtaggcatttcttgctgctccatcaacccaaaatatgttctgcaccctgtcttccttatcaagttgaatcttgtagaagaaattcgggtcatcctttttgatttcctcaaagtgagcaattgtttcaggaatatctctacacctatactcgctccccaactttgacttgaaattgcttatgtcttttctagtgtagggtacattcctagcccctccatacaattcagacatcaattgcataattctactcgctgagagattaactccgtgcagcattgtgatgaaatctttttcctctttcggtattgctctatgtgaccttaggaatttcttgagtgaaaactttctaaccagaggatgtgtgtgttcttcaacaaactgaattacttcccacctagctcctttcctcttcattgtcatccttgctttgcaggcagcctgtcttgttctacttcttttccttttctttgggggggggggcacgcttcacccgttttttcttctggaccacatttgttgcaaacaaacattactttgtcacgttctccatttttggctgactttcttgaagtgttgattttgattgaaaatccaacgcgctttgcgtacctgttgtagtgagcccttgcttcctcctctgagttgaaagtcaaggtgaggtacggcacttgtgtgcgcacggaatatcctgtgatggcgttgactgtgcttctgagtcatctgttccagagtcttcacttgaaattgtgttggcagtagcagttgttgcgccagttgcaacactagtatgcattgtgtctgcatgatctgacatttcttcaaatacttgcatctcatcattggctacattgtgtgcttgtaaacttccagcatcaccagcagtatacatattttcatagtcaaaagtgtcgtccaaatttatagtaggaatctccattctagtgtcagttggatttatagggaagtatgtttcacttttgtcttcatcatcaactagtaaatggtgtactggaggttcattttcacctgaaactaattccgggatactgttaaggtcaaaatccat
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CDS seq | atgaagaggaaaggagctaggtgggaagtaattcagtttgttgaagaacacacacatcctctggttagaaagttttcactcaagaaattcctaaggtcacatagagcaataccgaaagaggaaaaagatttcatcacaatgctgcacggagttaatctctcagcgagtagaattatgcaattgatgtctgaattgtatggaggggctaggaatgtgatggcatctgattttgtgggccaagtgagtgacattccagaacactacatattgcctagatggacgatggttaaagagcctgaattgcctccagttacaagcattggtgaacaaatgcaattgccccctgaatctctgaagctaatcagctataccaatctgtgcacaaaatttacacagattgcaaaagatgcatcaagcaacgagaaagcctaccgtatggctctacagcgtatgagctcaatgactgatgacttagcagctatgaagcagagtagaaagaaacagaaaaaagcacagccagccccagctgatcctgcaagaggagtttcagatatcccctcggcatcaactaacccaacactacaaataaatgacccccccatcatacaaaagcaagggagaccagtttcaacaagacgcaagcctggggtccatgcaaaggcgtcaaagacatcagttaggaaaggcctagctagtactgggaagtga
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Protein seq | MKRKGARWEVIQFVEEHTHPLVRKFSLKKFLRSHRAIPKEEKDFITMLHGVNLSASRIMQLMSELYGGARNVMASDFVGQVSDIPEHYILPRWTMVKEPELPPVTSIGEQMQLPPESLKLISYTNLCTKFTQIAKDASSNEKAYRMALQRMSSMTDDLAAMKQSRKKQKKAQPAPADPARGVSDIPSASTNPTLQINDPPIIQKQGRPVSTRRKPGVHAKASKTSVRKGLASTGK |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsLima_06g0009950 | OsLima_06g0009950.02 | Chr06 | 7969382 | 7971672 | - | NAM | ||
CDS seq | atgaagaggaaaggagctaggtgggaagtaattcagtttgttgaagaacacacacatcctctggttagaaagttttcactcaagaaattcctaaggtcacatagagcaataccgaaagaggaaaaagatttcatcacaatgctgcacggagttaatctctcagcgagtagaattatgcaattgatgtctgaattgtatggaggggctaggaatgtgatggcatctgattttgtgggccaagtgagtgacattccagaacactacatattgcctagatggacgatggttaaagagcctgaattgcctccagttacaagcattggtgaacaaatgcaattgccccctgaatctctgaagctaatcagctataccaatctgtgcacaaaatttacacagattgcaaaagatgcatcaagcaacgagaaagcctaccgtatggctctacagcgtatgagctcaatgactgatgacttagcagctatgaagcagagtagaaagaaacagaaaaaagcacagccagccccagctgatcctgcaagaggagtttcagatatcccctcggcatcaactaacccaacactacaaataaatgacccccccatcatacaaaagcaagggagaccagtttcaacaagacgcaagcctggggtccatgcaaaggcgtcaaagacatcagttaggaaaggcctagctagtactgggaagtga
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Protein seq | MKRKGARWEVIQFVEEHTHPLVRKFSLKKFLRSHRAIPKEEKDFITMLHGVNLSASRIMQLMSELYGGARNVMASDFVGQVSDIPEHYILPRWTMVKEPELPPVTSIGEQMQLPPESLKLISYTNLCTKFTQIAKDASSNEKAYRMALQRMSSMTDDLAAMKQSRKKQKKAQPAPADPARGVSDIPSASTNPTLQINDPPIIQKQGRPVSTRRKPGVHAKASKTSVRKGLASTGK
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Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsLima_06g0009950 | OsLima_06g0009950.01 | Chr06 | 7971675 | 7972324 | - | NAM | ||
CDS seq | atggattttgaccttaacagtatcccggaattagtttcaggtgaaaatgaacctccagtacaccatttactagttgatgatgaagacaaaagtgaaacatacttccctataaatccaactgacactagaatggagattcctactataaatttggacgacacttttgactatgaaaatatgtatactgctggtgatgctggaagtttacaagcacacaatgtagccaatgatgagatgcaagtatttgaagaaatgtcagatcatgcagacacaatgcatactagtgttgcaactggcgcaacaactgctactgccaacacaatttcaagtgaagactctggaacagatgactcagaagcacagtcaacgccatcacaggatattccgtgcgcacacaagtgccaggaggaagcaagggctcactacaacaggtacgcaaagcgcgttggattttcaatcaaaatcaacacttcaagaaagtcagccaaaaatggagaacgtgacaaagtaatgtttgtttgcaacaaatgtggtccagaagaaaaaacgggtgaagcgtgcccccccccccaaagaaaaggaaaagaagtagaacaagacaggctgcctgcaaagcaaggatga
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Protein seq | MDFDLNSIPELVSGENEPPVHHLLVDDEDKSETYFPINPTDTRMEIPTINLDDTFDYENMYTAGDAGSLQAHNVANDEMQVFEEMSDHADTMHTSVATGATTATANTISSEDSGTDDSEAQSTPSQDIPCAHKCQEEARAHYNRYAKRVGFSIKINTSRKSAKNGERDKVMFVCNKCGPEEKTGEACPPPQRKGKEVEQDRLPAKQG
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g13900 | RBH | 0.0 | 0.0 | 0.065060 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0009940 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0009680 | SBH | 0.0 | 0.0 | 0.000000 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0009830 | RBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0009830 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0009930 | RBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0128500 | RBH | 0 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0009490 | RBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0131500 | RBH | 0.007867 | 0 | 0.00662 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0009800 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0009760 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0009810 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0009990 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0009730 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G009650 | RBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0009770 | SBH | 0.0 | 0.0 | 0.0 |