Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0009310 | OGI:06019760 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:7339887-7340876 | ||||||||
| Gene Symbol | YPD1, prx76, OsYPD1 | ||||||||||
| DNA seq | tcagccgcgcgggccgccgccgttgtaggcgtcgcaccggcggcgcacctcgccgttggcgccgttcttgacgccgtggtggctgagcctccgggcggcgcgcgcgaagtcggcgaagaacgccgtctcgttggcggcgtaccgctccacgtgcggccgcgtccgcgcgtcgccgtagagctcctggtcggtggcgaggaggccgaggccccgccggaggttgacgaagtacatgttgtcgaacctccccggcgtcatcacgtcgttgaacgccgcgacggtcgggtccctccggtagtccctgcacgcctcctgcagccgcttcgcgagcgccgggttcatggtcgggtcggcgccgccgccgccgccgccgccgtagatgcgggcggcgaactccttgcagtgggagaagccgagggtgtgtgcgccggagagcgcgacgaggtcctggacggtgaagcccttggcggcgaacacggcgacgaggcgggagacggtgaggttggcgtgcgggatctcggcgtcgggcgccgacggcgaggaggagagcccgtccttgcggccgaggcggagcgggtagtagggcccccccgtcatggtgacgaggtcgcgcgccgcgacagcgaggaggtcggcgcaggagacgacgcccgggcactccacctccagcgccgccttggcgcgcgccagggcgtcgaaggcgttgcccgggagcgacaggttcacgtcggcgtcgcgctcggagcgcgccgcggcggtggacgcgaccagcacggacgcgtcgcagccaccgacgaagcagtcgtggaagaagaggcggaggacgcccgccgccgtcgtcgggttggagatctgcttctgcgccagcacgtcggcgatgatccggtccgcgcgcgggcacgtcttgctgtagtagtccgccgacatcttcgcctccgccgccgccgcggcggcgagcaatgccaggacgacgacgaggtgagtgtccat
More
|
||||||||||
| CDS seq | atggacactcacctcgtcgtcgtcctggcattgctcgccgccgcggcggcggcggaggcgaagatgtcggcggactactacagcaagacgtgcccgcgcgcggaccggatcatcgccgacgtgctggcgcagaagcagatctccaacccgacgacggcggcgggcgtcctccgcctcttcttccacgactgcttcgtcggtggctgcgacgcgtccgtgctggtcgcgtccaccgccgcggcgcgctccgagcgcgacgccgacgtgaacctgtcgctcccgggcaacgccttcgacgccctggcgcgcgccaaggcggcgctggaggtggagtgcccgggcgtcgtctcctgcgccgacctcctcgctgtcgcggcgcgcgacctcgtcaccatgacgggggggccctactacccgctccgcctcggccgcaaggacgggctctcctcctcgccgtcggcgcccgacgccgagatcccgcacgccaacctcaccgtctcccgcctcgtcgccgtgttcgccgccaagggcttcaccgtccaggacctcgtcgcgctctccggcgcacacaccctcggcttctcccactgcaaggagttcgccgcccgcatctacggcggcggcggcggcggcggcgccgacccgaccatgaacccggcgctcgcgaagcggctgcaggaggcgtgcagggactaccggagggacccgaccgtcgcggcgttcaacgacgtgatgacgccggggaggttcgacaacatgtacttcgtcaacctccggcggggcctcggcctcctcgccaccgaccaggagctctacggcgacgcgcggacgcggccgcacgtggagcggtacgccgccaacgagacggcgttcttcgccgacttcgcgcgcgccgcccggaggctcagccaccacggcgtcaagaacggcgccaacggcgaggtgcgccgccggtgcgacgcctacaacggcggcggcccgcgcggctga
More
|
||||||||||
| Protein seq | MDTHLVVVLALLAAAAAAEAKMSADYYSKTCPRADRIIADVLAQKQISNPTTAAGVLRLFFHDCFVGGCDASVLVASTAAARSERDADVNLSLPGNAFDALARAKAALEVECPGVVSCADLLAVAARDLVTMTGGPYYPLRLGRKDGLSSSPSAPDAEIPHANLTVSRLVAVFAAKGFTVQDLVALSGAHTLGFSHCKEFAARIYGGGGGGGADPTMNPALAKRLQEACRDYRRDPTVAAFNDVMTPGRFDNMYFVNLRRGLGLLATDQELYGDARTRPHVERYAANETAFFADFARAARRLSHHGVKNGANGEVRRRCDAYNGGGPRG |
||||||||||
| Function | Peroxidase 65 [UniProtKB/Swiss-Prot:Q9FJR1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0009310 | OsLima_06g0009310.01 | Chr06 | 7339887 | 7340876 | - | NAM | ||
| CDS seq | atggacactcacctcgtcgtcgtcctggcattgctcgccgccgcggcggcggcggaggcgaagatgtcggcggactactacagcaagacgtgcccgcgcgcggaccggatcatcgccgacgtgctggcgcagaagcagatctccaacccgacgacggcggcgggcgtcctccgcctcttcttccacgactgcttcgtcggtggctgcgacgcgtccgtgctggtcgcgtccaccgccgcggcgcgctccgagcgcgacgccgacgtgaacctgtcgctcccgggcaacgccttcgacgccctggcgcgcgccaaggcggcgctggaggtggagtgcccgggcgtcgtctcctgcgccgacctcctcgctgtcgcggcgcgcgacctcgtcaccatgacgggggggccctactacccgctccgcctcggccgcaaggacgggctctcctcctcgccgtcggcgcccgacgccgagatcccgcacgccaacctcaccgtctcccgcctcgtcgccgtgttcgccgccaagggcttcaccgtccaggacctcgtcgcgctctccggcgcacacaccctcggcttctcccactgcaaggagttcgccgcccgcatctacggcggcggcggcggcggcggcgccgacccgaccatgaacccggcgctcgcgaagcggctgcaggaggcgtgcagggactaccggagggacccgaccgtcgcggcgttcaacgacgtgatgacgccggggaggttcgacaacatgtacttcgtcaacctccggcggggcctcggcctcctcgccaccgaccaggagctctacggcgacgcgcggacgcggccgcacgtggagcggtacgccgccaacgagacggcgttcttcgccgacttcgcgcgcgccgcccggaggctcagccaccacggcgtcaagaacggcgccaacggcgaggtgcgccgccggtgcgacgcctacaacggcggcggcccgcgcggctga
More
|
|||||||
| Protein seq | MDTHLVVVLALLAAAAAAEAKMSADYYSKTCPRADRIIADVLAQKQISNPTTAAGVLRLFFHDCFVGGCDASVLVASTAAARSERDADVNLSLPGNAFDALARAKAALEVECPGVVSCADLLAVAARDLVTMTGGPYYPLRLGRKDGLSSSPSAPDAEIPHANLTVSRLVAVFAAKGFTVQDLVALSGAHTLGFSHCKEFAARIYGGGGGGGADPTMNPALAKRLQEACRDYRRDPTVAAFNDVMTPGRFDNMYFVNLRRGLGLLATDQELYGDARTRPHVERYAANETAFFADFARAARRLSHHGVKNGANGEVRRRCDAYNGGGPRG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0237600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g13050 | RBH | 2.481704 | 1.953413 | 0.784063 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0237600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0009260 | RBH | 0.773049 | 6.540307 | 4.984221 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0009130 | RBH | 0.269415 | 1.285028 | 2.266705 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0009140 | RBH | 1.393885 | 4.314651 | 11.391654 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0009220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0009260 | RBH | 0.0 | 0.0 | 3.452692 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0118800 | RBH | 0.0195705 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0008840 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0120300 | RBH | 0 | 0 | 0.018454 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0032940 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0009120 | RBH | 0.824696 | 3.796155 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0009170 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0009240 | RBH | 0.383262 | 0.000000 | 0.229565 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0009060 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G008940 | SBH | 2.938039 | 1.146266 | 5.409585 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0009230 | RBH | 6.508775 | 13.752742 | 10.097981 |
