Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0009290 | OGI:06019750 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:7313504-7314518 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taacaaagatcaaagatgtaattatttctattatatataaaaaaggtatatattcgtagtcatcacgatgacattgaaatgagctcgagctgagcttacacaaggtggaagggattccataggatggagtagtcatggaaatcggcggcagggtcgaaccagaggcggaggcgctgctcacggtcgccatggccgccgatgaagacgttggtctggagggtgatgggttcgccgtccttgtcgcccaggaactcaaagtccacctcgtcctgcacgtccctgtctggctctgacgctagctacccttgcaatttcagaaataaaataaattaattgtaatagattctaaatttcagttaattactggtgcttagttattaatcaacattaaatgatatgcgatagtaattaacacctatataatttgaagtgaagttgatttagcagtttagcactcacatagtaggctgttacaacgccggcagtgtagccggcaggaaccttgatcctcatgtggaagaaccctgagccgtacatcaacttggacctgaatccagcacctgcacatgatgaaaaatttgcatgatcacatcaagctagttaagcataaaatagagagagaagaagaaaaaaactatggtcaaactgatctaaatgctgaattaatccaacagtgtcatgatctatctctgtgtataccagagctcttgtccagggtgaggctaatctgcgcgccctggttgaccaggtggtagccgtctccaccgtatgtggccacgtagttgtcgtcgaacaccgtcgccaccgccgccgccgccgccggcggcggcggcggcaaactatccacggccgggaggaggacggcgatggcgatgaagtggaggaagagcagccatggcggctgcacttggaaaaccatagatatataatactttagccaatgtttgctagtgctaactaattaattaactcgattgattattgcaatggagaagttcttgtgtacgtagctcac
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| CDS seq | atggttttccaagtgcagccgccatggctgctcttcctccacttcatcgccatcgccgtcctcctcccggccgtggatagtttgccgccgccgccgccggcggcggcggcggcggtggcgacggtgttcgacgacaactacgtggccacatacggtggagacggctaccacctggtcaaccagggcgcgcagattagcctcaccctggacaagagctctggtgctggattcaggtccaagttgatgtacggctcagggttcttccacatgaggatcaaggttcctgccggctacactgccggcgttgtaacagcctactatctagcgtcagagccagacagggacgtgcaggacgaggtggactttgagttcctgggcgacaaggacggcgaacccatcaccctccagaccaacgtcttcatcggcggccatggcgaccgtgagcagcgcctccgcctctggttcgaccctgccgccgatttccatgactactccatcctatggaatcccttccaccttgtgtaa
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| Protein seq | MVFQVQPPWLLFLHFIAIAVLLPAVDSLPPPPPAAAAAVATVFDDNYVATYGGDGYHLVNQGAQISLTLDKSSGAGFRSKLMYGSGFFHMRIKVPAGYTAGVVTAYYLASEPDRDVQDEVDFEFLGDKDGEPITLQTNVFIGGHGDREQRLRLWFDPAADFHDYSILWNPFHLV |
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| Function | Putative xyloglucan endotransglucosylase/hydrolase protein 1 [UniProtKB/Swiss-Prot:Q9SV61] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0009290 | OsLima_06g0009290.01 | Chr06 | 7313504 | 7314518 | - | NAM | ||
| CDS seq | atggttttccaagtgcagccgccatggctgctcttcctccacttcatcgccatcgccgtcctcctcccggccgtggatagtttgccgccgccgccgccggcggcggcggcggcggtggcgacggtgttcgacgacaactacgtggccacatacggtggagacggctaccacctggtcaaccagggcgcgcagattagcctcaccctggacaagagctctggtgctggattcaggtccaagttgatgtacggctcagggttcttccacatgaggatcaaggttcctgccggctacactgccggcgttgtaacagcctactatctagcgtcagagccagacagggacgtgcaggacgaggtggactttgagttcctgggcgacaaggacggcgaacccatcaccctccagaccaacgtcttcatcggcggccatggcgaccgtgagcagcgcctccgcctctggttcgaccctgccgccgatttccatgactactccatcctatggaatcccttccaccttgtgtaa
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| Protein seq | MVFQVQPPWLLFLHFIAIAVLLPAVDSLPPPPPAAAAAVATVFDDNYVATYGGDGYHLVNQGAQISLTLDKSSGAGFRSKLMYGSGFFHMRIKVPAGYTAGVVTAYYLASEPDRDVQDEVDFEFLGDKDGEPITLQTNVFIGGHGDREQRLRLWFDPAADFHDYSILWNPFHLV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0237400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g13040 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0237400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0009250 | RBH | 0.0 | 0.0 | 0.515340 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0009120 | RBH | 0.0 | 0.0 | 0.521543 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0009130 | RBH | 0.0 | 0.0 | 2.722153 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0009190 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0009240 | RBH | 0.0 | 0.0 | 3.153311 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0118700 | SBH | 8.6476625 | 8.8374835 | 12.0945165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0008820 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0119700 | RBH | 0 | 0.1450765 | 0.0313575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0009110 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0009150 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0029500 | RBH | 0.0 | 0.0 | 0.292621 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0009040 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G008930 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0009220 | RBH | 0.0 | 0.0 | 0.854723 |
