Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0008850 | OGI:06018470 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:6885227-6891325 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggcaagtcgctgatcacaactacgcatcgccatgtgtcccccgtccccgatcagcctgcgacttccgctgcgggccgcacgcgcgggaggaggcggcgtacgagccgagggcgaggaaaacgcggcacgcgggcgctggcgcacgcgcatgcgcttggctcgagctgggaaaaaaagctttgggccgctccgaccgccacggcgtccgtccgtgctcgccgctcgcggcgtacgtagtcaaagccagcgtgcgtgggtgcgtgactgcgtataggggccacgacccgctgcggccgcgcccatcccgccagttcagtcaccaacccaccaaaccccaccgcgaccgcgactccgacgtctccgccacgggccaaagtcgaaaaatcgaggggaaatcccatcgtttcccatctccatcccgcggcgggcgcacgggttggtcggttggtccgtccgtggcgtggactcgaagccgcctcgtcttcctcctcctcctcctcccccctccggcagtggcccaggagggcgcccgcggctactgctgcttccgctcaaagcttcaagttcccgtgcgcttctgcttccccactacctcccgctggtctcggtgcccactgcgcagcgcggtgcttcatctccctctcgctccggggctggctgccgccacaagctagcggcagcggaggactcgcttccgacgagctcggtgtggtgtggaggtggtgtctggcttggctggttggtttgctggtgagtggctcgggcattgaggctatttctctgttcgaattgcattgcggaggtgggggagcggggatggtggccggctcggttctcgaatcggctgccgcctgggttgacaagattttggagcggaatttgggggcggttgctttttgcttgtaagattgctggtgtttcttcgtcgtccctgatctcgcttgtgtggtttcccgctccagattcgttggaggatgggggggtttcggtgcggtcatctgcgcattgatgtggagttagtggatgagtggcgtcattttccgccatctcaaaagagggttgtcggtgggagttcgtgtgatgccgtgatggggcgttgacgctagattcgcggctccaatttcgtgaaactttcgcggaattcgagttttttttcgtatttagctgtgtttttctttcatttattttttctaaacctttttcgtgatctctctagcgttgtggctggatttaccgttgcttaattctgaccgcgtgattagtggatggaactgtttcctccacttgggaagaccttgcaattggagctcggctcctttacggtttcctgatgatttccccggataacagtgatgtaattatgttgtcttcttcttttgctatactcttttgctgtgatttcgccctcactttctctatttcaagaaattagcttcgctgattggtgcactgctaaactcggttttcccttttagataaggaaatggtttatatctccagcctctgccatgctaaacttggtttactcgtttacttgctaggttgatttgacaatagttacttggttcggtaggagcttctaatttctgaatatggggcattgaattggacacacatatgccacatcatagcaattccaaggcatgatgcggttttggtgcttgttatcttgtagtaataccaagagagttcctgtggttggaagagtctgtagccaacgattctgtttgtgtatcatttaggactggctatgatataagcacgacttgtagaatagcaccatggatgtgtataaacattacctttaccttgtagtagagtgtaccatgtgcaccattaatgcaatcaacatcaaacatttcattcgccaattaccattaatgggcatgcttcttcttgtttgacaggacgtaaagcacattcctatttgggttgcgttgcttctttaggtcagaggacactccaaactgccgcaaagtttcactgatacagctctttgtcttcataaagggattatcatacaccttaacactttaatagaccaggatgacagttgagctggaattgatttaacttgcttgcttggatggtttgtgttctgaatttggaatttcatggttatggatactttaggatgaacacatattgattttagacatcagaccaacttgctaaaacagttctgagtgatgaagaaatggcacggtggttttgtcatagtatctttgttcattatattgatgctaagatatgttatattggatagtccacttgctgaaaaatctcttcagtatgtcttccaacagaataacacaaccccactacattggctggatgttccaaacccgcctgcagttcagaatccacagaacatctctcaagtaatatcaactgaattgttagcttcaaacctttccataacaagaaatttctccgatagagaactgcagtcattgcattcttggaatcatttaaaagacctagtaagtcatgcgcacatcttaccagatggagtagaagcaatcaaggaagctggagtagcatggagggagctaaatgcagcccttgaatacgatgaatctgctgtttctgtcaatggtagcactcatcaaaaaagtaaagagaagcaatgcccatattccattcgaagaatgaatgctacaagatcaggtgatagatttgtcttaaagattccttgtggactgattcagggctcttcaataactattatcggtactcctggtggtcttcttggtagttttaagatagaattaactggggctactgtacctggtgaaccagaccctccaattgtgcttcattacaatgtccgtcttcttggtgataaacttacagaagatcctgtaatagtccaaaatacatggactatagctgacgactggggttctgaagatcgttgcccatctcctggttcagatgctaaggacattgcaaaaggtacatttgtttcagttgcctgtctcttcctatggacatgatatccatcgattgtatcatatgatcttgccctacaattggatacataaaataccttgataaagtaccgtacctagtttttatgattgcctacatggtaaaaagtatgccctcttcatgtattgtacctgcaaacattatttgtgtgaagcttttgatattgctatataattctatttttcatcacttttagcccttaagatttgttcaaaaaaatcgattggtgtcttggcaaatagttcattcgcctcttgatcttgagcttgacatagatacatcgtgttctattgttttacagtggatgagttagaaaaatgcggtagcatggtgggcaatgatcaaaaacaagcatgggccactaagttaaagtccaatgtttcaagcatacaacctgcctggaaaaagaacacagaacctaagaaatattttcccttcagacaaggatatcttgctatagcaattcttcgtgttggagcacatgggatccatatgactgtagatgggaaacatgtcacttcatttgcctttcgggaggtgagtcttttttaggcaatctagtatgttttatatcttgaaatattttgtaggcatttttttctgagtgtgcaaaaatatttgttcttccatagttcatacacacaaagaattgaaactcattttattctcctcagctctcttatgtcaaaatatgtttggattgctatttttcttactaatgtattcttttaccaggatttggagcctggatttgttggtgaagtaagaattgcaggagatattaaattgttgtctgtgatagcaagtggtttgcctacaacagaggactttgaacatgtgactgacttagaaattttgaaggctccaccagttcccatggacaaacccctggatctttttattgggatcttttctacagctaacaatttcaagcgcagaatggcagttcgcagaacttggatgcagtatgatgctgtccgctcaggaaaggctgcagttcgattctttgttggcctggtaagcatgaaactatgacagaatagcatattatagggtgattcactggtttatacctgaaagcattggctgattttaactttctatggttatatgcctagaggctgatgtgttggaatataattaccacctataacctattttagcatatcatgccctgtgttgattgtactccccacatgtaaatatttagttgctcgttaatttcactctaaatttgtgtattgctacctatcagtagaatgtaccgatgtatcatgactattgtctcgaacaatactgtaaaaaaaattcatttttactcttattgttccctttttttgccggcaccagttgtgctagtttgaattagggtacccttcttcagagttaacacatctaccccttttcctgccattgttaaaagcataaaaatgaggtggtgaatgaggaactttggaatgaagcacgaacatatggagacatccaattgatgccctttgttgattattatagcctgattctatggaagactatagccatctgcatctatggggtatgtagttacttttttttgtatgtattttttgaaatattttgcatctaattcagcttaaatttttcctcttagacaaacgtcttgtcagccaagtatgtgatgaaaacagatgatgatgcttttgtccgtgtggatgagatacttttatctttagatcgcgtgaacatcagtcatgggttactgtacggtcgtgtcaattctgattctcagcctcatcgagacccatatagcaagtggtacataaccccagaggtagttgatttaatcctaatttgacatttaagttaatgtgtgcaccgtcattttgaaacatgtagaaatcttctgtttgaccattgtatattgctaatattatgacatagtagatgcctaggaactgatttgttagtaattgggcacattcaacaggcttagcgataaatcctttaccatttttattttgcgatgaaataactctactactctacttatataggaatggcctgaggagagttatcctccatgggcacatggtccgggatacattgtatcacaagacatagcaaaagaagtttacaggaaacacaagagaggagaacttaaggtaataccagatttccctaaaatttcttctcactgctgatatgcagcagttgcacgcagttactgtggtttccgctaatggcacagccataatggaatattctaagcttactagtgctggtttctgtttatatgctcttggcatcctcaaatttgattcctactatccggacgttgtattgcagatgttcaaactagaagatgtcgcaatgggaatatggatcaatgagatgaagaaggatgggttggatgtaaagtatgaaaatgatgggaggattttggtcgaaggctgtgaggaaggatatgtggttgcacattaccaggagccaagggacatgatgtgcctatgggacaaatttctgaaaacaaaacgaggaacatgttgcaaggagtaacgggggagtaacaggactaatccgaccatatattttgatggctactgtatagccatggcctgctgacaccaacgacaagctcggcacaacgccacaaccccatgcaagaggagcaggcaacaaagttttaaccttgcttatttttggtggttgcagaatcaataggcaacgaagttttgaatatcattcacagtcatttttgtccgcggggaaagaaattgaagtctcaccaccatattttgtagaagatgtaggtttcctatttgggcatataggtagggaggtgttgcttagttgcttgcagtgtggcttcttgtaacatatcttactagaaaaacgtaggatacaccggcaattacacttttagggtagatgcagaggcagtattaccattcttttcctaggaatgcatcctgtatctgatgtaaagctatttgacaactactcattgtacaatccacttcctatccacggcatacctgaactttttctttgtcacgttgcctgtgcaaatcttctctgtgctgttctctgaaggcatttgatgtagcaatcacactttataattctata
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| CDS seq | atgaagaaatggcacggtggttttgtcatagtatctttgttcattatattgatgctaagatatgttatattggatagtccacttgctgaaaaatctcttcagtatgtcttccaacagaataacacaaccccactacattggctggatgttccaaacccgcctgcagttcagaatccacagaacatctctcaagtaatatcaactgaattgttagcttcaaacctttccataacaagaaatttctccgatagagaactgcagtcattgcattcttggaatcatttaaaagacctagtaagtcatgcgcacatcttaccagatggagtagaagcaatcaaggaagctggagtagcatggagggagctaaatgcagcccttgaatacgatgaatctgctgtttctgtcaatggtagcactcatcaaaaaagtaaagagaagcaatgcccatattccattcgaagaatgaatgctacaagatcaggtgatagatttgtcttaaagattccttgtggactgattcagggctcttcaataactattatcggtactcctggtggtcttcttggtagttttaagatagaattaactggggctactgtacctggtgaaccagaccctccaattgtgcttcattacaatgtccgtcttcttggtgataaacttacagaagatcctgtaatagtccaaaatacatggactatagctgacgactggggttctgaagatcgttgcccatctcctggttcagatgctaaggacattgcaaaagtggatgagttagaaaaatgcggtagcatggtgggcaatgatcaaaaacaagcatgggccactaagttaaagtccaatgtttcaagcatacaacctgcctggaaaaagaacacagaacctaagaaatattttcccttcagacaaggatatcttgctatagcaattcttcgtgttggagcacatgggatccatatgactgtagatgggaaacatgtcacttcatttgcctttcgggaggatttggagcctggatttgttggtgaagtaagaattgcaggagatattaaattgttgtctgtgatagcaagtggtttgcctacaacagaggactttgaacatgtgactgacttagaaattttgaaggctccaccagttcccatggacaaacccctggatctttttattgggatcttttctacagctaacaatttcaagcgcagaatggcagttcgcagaacttggatgcagtatgatgctgtccgctcaggaaaggctgcagttcgattctttgttggcctgcataaaaatgaggtggtgaatgaggaactttggaatgaagcacgaacatatggagacatccaattgatgccctttgttgattattatagcctgattctatggaagactatagccatctgcatctatgggacaaacgtcttgtcagccaagtatgtgatgaaaacagatgatgatgcttttgtccgtgtggatgagatacttttatctttagatcgcgtgaacatcagtcatgggttactgtacggtcgtgtcaattctgattctcagcctcatcgagacccatatagcaagtggtacataaccccagaggaatggcctgaggagagttatcctccatgggcacatggtccgggatacattgtatcacaagacatagcaaaagaagtttacaggaaacacaagagaggagaacttaagatgttcaaactagaagatgtcgcaatgggaatatggatcaatgagatgaagaaggatgggttggatgtaaagtatgaaaatgatgggaggattttggtcgaaggctgtgaggaaggatatgtggttgcacattaccaggagccaagggacatgatgtgcctatgggacaaatttctgaaaacaaaacgaggaacatgttgcaaggagtaa
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| Protein seq | MKKWHGGFVIVSLFIILMLRYVILDSPLAEKSLQYVFQQNNTTPLHWLDVPNPPAVQNPQNISQVISTELLASNLSITRNFSDRELQSLHSWNHLKDLVSHAHILPDGVEAIKEAGVAWRELNAALEYDESAVSVNGSTHQKSKEKQCPYSIRRMNATRSGDRFVLKIPCGLIQGSSITIIGTPGGLLGSFKIELTGATVPGEPDPPIVLHYNVRLLGDKLTEDPVIVQNTWTIADDWGSEDRCPSPGSDAKDIAKVDELEKCGSMVGNDQKQAWATKLKSNVSSIQPAWKKNTEPKKYFPFRQGYLAIAILRVGAHGIHMTVDGKHVTSFAFREDLEPGFVGEVRIAGDIKLLSVIASGLPTTEDFEHVTDLEILKAPPVPMDKPLDLFIGIFSTANNFKRRMAVRRTWMQYDAVRSGKAAVRFFVGLHKNEVVNEELWNEARTYGDIQLMPFVDYYSLILWKTIAICIYGTNVLSAKYVMKTDDDAFVRVDEILLSLDRVNISHGLLYGRVNSDSQPHRDPYSKWYITPEEWPEESYPPWAHGPGYIVSQDIAKEVYRKHKRGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEEGYVVAHYQEPRDMMCLWDKFLKTKRGTCCKE |
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| Function | Beta-1,3-galactosyltransferase GALT1 [UniProtKB/Swiss-Prot:Q8L7F9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0008850 | OsLima_06g0008850.01 | Chr06 | 6885227 | 6891325 | + | NAM | ||
| CDS seq | atgaagaaatggcacggtggttttgtcatagtatctttgttcattatattgatgctaagatatgttatattggatagtccacttgctgaaaaatctcttcagtatgtcttccaacagaataacacaaccccactacattggctggatgttccaaacccgcctgcagttcagaatccacagaacatctctcaagtaatatcaactgaattgttagcttcaaacctttccataacaagaaatttctccgatagagaactgcagtcattgcattcttggaatcatttaaaagacctagtaagtcatgcgcacatcttaccagatggagtagaagcaatcaaggaagctggagtagcatggagggagctaaatgcagcccttgaatacgatgaatctgctgtttctgtcaatggtagcactcatcaaaaaagtaaagagaagcaatgcccatattccattcgaagaatgaatgctacaagatcaggtgatagatttgtcttaaagattccttgtggactgattcagggctcttcaataactattatcggtactcctggtggtcttcttggtagttttaagatagaattaactggggctactgtacctggtgaaccagaccctccaattgtgcttcattacaatgtccgtcttcttggtgataaacttacagaagatcctgtaatagtccaaaatacatggactatagctgacgactggggttctgaagatcgttgcccatctcctggttcagatgctaaggacattgcaaaagtggatgagttagaaaaatgcggtagcatggtgggcaatgatcaaaaacaagcatgggccactaagttaaagtccaatgtttcaagcatacaacctgcctggaaaaagaacacagaacctaagaaatattttcccttcagacaaggatatcttgctatagcaattcttcgtgttggagcacatgggatccatatgactgtagatgggaaacatgtcacttcatttgcctttcgggaggatttggagcctggatttgttggtgaagtaagaattgcaggagatattaaattgttgtctgtgatagcaagtggtttgcctacaacagaggactttgaacatgtgactgacttagaaattttgaaggctccaccagttcccatggacaaacccctggatctttttattgggatcttttctacagctaacaatttcaagcgcagaatggcagttcgcagaacttggatgcagtatgatgctgtccgctcaggaaaggctgcagttcgattctttgttggcctgcataaaaatgaggtggtgaatgaggaactttggaatgaagcacgaacatatggagacatccaattgatgccctttgttgattattatagcctgattctatggaagactatagccatctgcatctatgggacaaacgtcttgtcagccaagtatgtgatgaaaacagatgatgatgcttttgtccgtgtggatgagatacttttatctttagatcgcgtgaacatcagtcatgggttactgtacggtcgtgtcaattctgattctcagcctcatcgagacccatatagcaagtggtacataaccccagaggaatggcctgaggagagttatcctccatgggcacatggtccgggatacattgtatcacaagacatagcaaaagaagtttacaggaaacacaagagaggagaacttaagatgttcaaactagaagatgtcgcaatgggaatatggatcaatgagatgaagaaggatgggttggatgtaaagtatgaaaatgatgggaggattttggtcgaaggctgtgaggaaggatatgtggttgcacattaccaggagccaagggacatgatgtgcctatgggacaaatttctgaaaacaaaacgaggaacatgttgcaaggagtaa
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| Protein seq | MKKWHGGFVIVSLFIILMLRYVILDSPLAEKSLQYVFQQNNTTPLHWLDVPNPPAVQNPQNISQVISTELLASNLSITRNFSDRELQSLHSWNHLKDLVSHAHILPDGVEAIKEAGVAWRELNAALEYDESAVSVNGSTHQKSKEKQCPYSIRRMNATRSGDRFVLKIPCGLIQGSSITIIGTPGGLLGSFKIELTGATVPGEPDPPIVLHYNVRLLGDKLTEDPVIVQNTWTIADDWGSEDRCPSPGSDAKDIAKVDELEKCGSMVGNDQKQAWATKLKSNVSSIQPAWKKNTEPKKYFPFRQGYLAIAILRVGAHGIHMTVDGKHVTSFAFREDLEPGFVGEVRIAGDIKLLSVIASGLPTTEDFEHVTDLEILKAPPVPMDKPLDLFIGIFSTANNFKRRMAVRRTWMQYDAVRSGKAAVRFFVGLHKNEVVNEELWNEARTYGDIQLMPFVDYYSLILWKTIAICIYGTNVLSAKYVMKTDDDAFVRVDEILLSLDRVNISHGLLYGRVNSDSQPHRDPYSKWYITPEEWPEESYPPWAHGPGYIVSQDIAKEVYRKHKRGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEEGYVVAHYQEPRDMMCLWDKFLKTKRGTCCKE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.279987 | 0.625074 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0229200 | RBH | 2.094528 | 2.140009 | 3.125816 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g12390 | RBH | 1.200259 | 1.219669 | 0.681844 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0229200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0008790 | RBH | 0.182096 | 26.541349 | 8.001822 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0008660 | RBH | 0.051662 | 10.221756 | 1.702917 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0008670 | RBH | 0.647996 | 20.538002 | 6.874486 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0008770 | RBH | 0.000000 | 0.603035 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0008770 | RBH | 4.428899 | 24.642231 | 10.807253 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0049500 | SBH | 4.258065 | 10.658367 | 6.9957 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0008370 | RBH | 0.236349 | 1.530990 | 1.001511 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0112400 | RBH | 7.0257385 | 20.7019215 | 13.1650665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0008660 | RBH | 0.100000 | 19.766703 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0008710 | RBH | 1.333609 | 37.617962 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0008770 | RBH | 0.520063 | 2.155198 | 1.722595 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0008590 | RBH | 0.277011 | 11.842151 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G008490 | RBH | 0.211960 | 1.792753 | 2.070305 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0008790 | RBH | 0.466446 | 25.486444 | 5.016566 |
