Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0008450 | OGI:06017510 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:6470202-6471771 | ||||||||
| Gene Symbol | ERF120, OsERF#120, OsERF120, AP2/EREBP#105, AP2/EREBP105 | ||||||||||
| DNA seq | gagcaaagtaaatacattacaaaaattttaaagagtgaattgcaacagcagtaaccaaaagttacattacattacaccctcaactggccttgccgagtgaaaaaaaaacaaccggcgaagtaaccaggagatcataataactactaagtacagaaaattaatacagcaataataagctaagaacacttatcttaaacccttcttaatgacttaatcctactacgatgacgacgacgacctccttaaaccctaattgcagcagccatggccgatgtctaatattccatcggatcatggaagctactgattacattaatttaatttaatttaattttaattaattaaagttgatttgatcacgagaggatggagtcccagtcgatctcccatgacggacacttgtagaggtggaaggcgtcggattcgtcccatggcgcctccgtgaagtcaaggtttgccatctcggggagcgccgccggcggcggcggtggcggcggcgggagaggaggcgaacaggcggagatcgccgactcgtctccctccgacgtcgtggtcgtcgtcgacgcggagcctttgggcgagtccgggtgagcggcggcggcggcggctttcttggaggaggcgggcggcgcggcggcgaggctgtggcagatggcggtgagcttggcgtcgatggaggcgtggagcgggccggcgaggtgggcgccgccgcggcggagcgtggggaagttgaggcgcgcggcgtcgccgcggaggcggaacgccgccttgtcgtaggcgagcgccgcgtcctcggcggtgtcgaacgtgcccagccacagccgcgtccggttcttcggcagccggatctccgccacccacttcccccagtgccgctgccgcacgccgcggtacatcttgccgccggccgccgccgccgccgccgccccggcctgcttcatgggctgcgcccgcgggccaaggtacgacgccgccgccgacgccgacgccgacgccgccatcccccgctgctgcagctgctgctgcatcaagaactgcacctgaatctgctggatctgctccgggccaaggtgagccagccccaccgccgcagcattcgccggcgaggcgaacgacgaggaggagggaggcaggggagggagctccgagaaggaggtggtggtgttcgtcgtcgtcgtcggaggtggaacaatggcggcgtaggacgaagaagcagggaggtagtacgattcttgcggcaatggagacgagtaggagaagggagtggtggtggtggtggagatggagctagaggagtagaacaatggcgtggaggtggaggtggaggtgggtgaagcgctcctgataaaaggttcgagcgctttcatgagctcctgatccgaggaagaagacgaggacgaggagctcagctgatacttgtacaaatctatggccgccattagcaacaacactaaaggctaccaagaactaaaagaaaaaaaagttttgttttgtgcagaatctgaactaaaataattgattgattaagccctgtttcttcaaaaaaagcgaagaacaggggtggttcttg
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| CDS seq | atggcggccatagatttgtacaagtatcagctgagctcctcgtcctcgtcttcttcctcggatcaggagctcatgaaagcgctcgaaccttttatcaggagcgcttcacccacctccacctccacctccacgccattgttctactcctctagctccatctccaccaccaccaccactcccttctcctactcgtctccattgccgcaagaatcgtactacctccctgcttcttcgtcctacgccgccattgttccacctccgacgacgacgacgaacaccaccacctccttctcggagctccctcccctgcctccctcctcctcgtcgttcgcctcgccggcgaatgctgcggcggtggggctggctcaccttggcccggagcagatccagcagattcaggtgcagttcttgatgcagcagcagctgcagcagcgggggatggcggcgtcggcgtcggcgtcggcggcggcgtccctcgccgccgcgccgcccgcctcctccaagaaagccgccgccgccgccgctcacccggactcgcccaaaggctccgcgtcgacgacgaccacgacgtcggagggagacgagtcggcgatctccgcctgttcgcctcctctcccgccgccgccaccgccgccgccggcggcgctccccgagatggcaaaccttgacttcacggaggcgccatgggacgaatccgacgccttccacctctacaagtgtccgtcatgggagatcgactgggactccatcctctcgtga
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| Protein seq | MAAIDLYKYQLSSSSSSSSSDQELMKALEPFIRSASPTSTSTSTPLFYSSSSISTTTTTPFSYSSPLPQESYYLPASSSYAAIVPPPTTTTNTTTSFSELPPLPPSSSSFASPANAAAVGLAHLGPEQIQQIQVQFLMQQQLQQRGMAASASASAAASLAAAPPASSKKAAAAAAHPDSPKGSASTTTTTSEGDESAISACSPPLPPPPPPPPAALPEMANLDFTEAPWDESDAFHLYKCPSWEIDWDSILS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0008450 | OsLima_06g0008450.01 | Chr06 | 6470558 | 6471640 | - | NAM | ||
| CDS seq | atggcggccatagatttgtacaagtatcagctgagctcctcgtcctcgtcttcttcctcggatcaggagctcatgaaagcgctcgaaccttttatcaggagcgcttcacccacctccacctccacctccacgccattgttctactcctctagctccatctccaccaccaccaccactcccttctcctactcgtctccattgccgcaagaatcgtactacctccctgcttcttcgtcctacgccgccattgttccacctccgacgacgacgacgaacaccaccacctccttctcggagctccctcccctgcctccctcctcctcgtcgttcgcctcgccggcgaatgctgcggcggtggggctggctcaccttggcccggagcagatccagcagattcaggtgcagttcttgatgcagcagcagctgcagcagcgggggatggcggcgtcggcgtcggcgtcggcggcggcgtccctcgccgccgcgccgcccgcctcctccaagaaagccgccgccgccgccgctcacccggactcgcccaaaggctccgcgtcgacgacgaccacgacgtcggagggagacgagtcggcgatctccgcctgttcgcctcctctcccgccgccgccaccgccgccgccggcggcgctccccgagatggcaaaccttgacttcacggaggcgccatgggacgaatccgacgccttccacctctacaagtgtccgtcatgggagatcgactgggactccatcctctcgtga
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| Protein seq | MAAIDLYKYQLSSSSSSSSSDQELMKALEPFIRSASPTSTSTSTPLFYSSSSISTTTTTPFSYSSPLPQESYYLPASSSYAAIVPPPTTTTNTTTSFSELPPLPPSSSSFASPANAAAVGLAHLGPEQIQQIQVQFLMQQQLQQRGMAASASASAAASLAAAPPASSKKAAAAAAHPDSPKGSASTTTTTSEGDESAISACSPPLPPPPPPPPAALPEMANLDFTEAPWDESDAFHLYKCPSWEIDWDSILS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0008450 | OsLima_06g0008450.02 | Chr06 | 6470202 | 6471771 | - | IsoSeq | ||
| CDS seq | caagaaccacccctgttcttcgctttttttgaagaaacagggcttaatcaatcaattattttagttcagattctgcacaaaacaaaacttttttttcttttagttcttggtagc |
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| Protein seq | QEPPLFFAFFEETGLNQSIILVQILHKTKLFFLLVLGS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.072860 | 0.309321 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0222400 | RBH | 1.528796 | 2.110402 | 1.919701 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g11860 | RBH | 1.034350 | 1.420106 | 0.494407 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0222400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0008390 | RBH | 0.182630 | 24.992392 | 4.123207 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0008250 | RBH | 0.0 | 11.380258 | 1.800463 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0008250 | RBH | 0.406120 | 23.054634 | 2.752627 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0008380 | RBH | 0.067447 | 0.631402 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0008250 | RBH | 2.566505 | 67.190430 | 21.692617 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0104900 | RBH | 0.5972285 | 13.725935 | 7.702717 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0007990 | RBH | 0.137483 | 2.203079 | 0.295335 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0105200 | RBH | 0.9595715 | 31.122245 | 2.3703845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0033690 | RBH | 2.846921 | 3.366452 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0008270 | RBH | 0.210868 | 20.678076 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0008330 | RBH | 0.000000 | 49.377621 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0008390 | RBH | 0.000000 | 0.000000 | 0.535419 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0008180 | RBH | 0.0 | 17.542610 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G008090 | RBH | 0.110880 | 7.033723 | 0.752018 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0008360 | RBH | 0.618811 | 41.596882 | 1.837017 |
