Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0008180 | OGI:06016940 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:6225570-6227353 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggagggaacactgctagtatcagtgtttttttttataaaaacaaaaaaaaacaaattctggcatgcttgagctgagtgtttgataagtccagcaacctaagctcgtttgaaggatacgaataatcacatgaatatttgaatacagtgccggtacaagtacaaccccgctccagtttttcaacggaggggaagaaaaattggatctttgaacgtttccacgccacttctctatccaaagaagcaatggagagaaaaatgtataattaacaatctagtactaatttaggagtggtattttcaactcaaattgatgatcttttctagtgatctgtgtccgtgcacgagctgattcatcgaaggtccagccatggcggatcgctgcgagaagccgccgcggattggttttctgatcagatgatgcatgcactggcgccgccaccgcgcatggcgcgagctcaaacttgccgggcgattggcttctcgtcgtcatcctcctcgtcgtcgttggcgaaggcgacgactctgttgctcgggccgccgccgccgccgccgccgccgagacagtcgaagcggacgctgcccttggctgagctcacggagccatctgcggcggcggccgtcttgtcacgcttggtcctcgccgttgacgttggcgtcgtggtggtggtggtggcggcggcgtcagctccggcctccgcggcgtcgagtaccctcctcgacgcagaccagaacgggatcctcgaggagaaggtcctcgcgatgaacgacggccaccggtcggaccgcccgatccgcgcgctccgggcgccgccgccgacgcggccttcccggacggcggtgcggcgcaggctctcctcgccggcggcggcgaccatctccctgcgcacgtgctccggcaggcgcagcgtgaaccgctcgaggtcgccggcgtcgccgagccgcgtcgtggcgagggagtggcccgtcgagtgcgaccgcggcagcggcagcggccgccccgacctcgaccgcaccgcgcggcgctggctgccgatcctctcgagctccatcgcctccctccgcctctcctcgtcctcctcctcgccctcgcggtccacgtcgatggccaccaccacctcctcctcctgctgctccccatccacctcgccggagacgacgttcgcttccgccgccgccgcgtcgggcgcaaggttgcaccgacagacagggcaggtgacgtggccggcgagccactccccgatgcagtccgggtggaaggcgtggctgcacttgggcagcaaccggagctcctcgtcgtcgtcgaactcgctgaggcagacggcgcactcgagcacggcgtccttgccgccgtcgcggagctccctcgcctcggcgtacttcatggtggggaacgactcgaccacggcggggtcgagcccgcgctgccgccggctccgctgctcctgccgcgacagcgccgccagcgccgcggccgggatggtcggccccgtggaggcctcgccgccgcaccgccggatatagatggagaagaacccgatgaagaagaaggccgcgatgagcgccacgaggagcaccaccatgggcgcgctgaagctcggcgactgagagcccatgccgccgcctccgccgctgggcgccatgaacccacctcccccgccgccgttgttcttgtccctcgactcgttcggctgcccgtccgccgcggctagcagcagcagcggcgcggcgagcgcgagcgcgagcgggagcgcatggtggcggtggcgaggacgaggcgtcggcat
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| CDS seq | atgccgacgcctcgtcctcgccaccgccaccatgcgctcccgctcgcgctcgcgctcgccgcgccgctgctgctgctagccgcggcggacgggcagccgaacgagtcgagggacaagaacaacggcggcgggggaggtgggttcatggcgcccagcggcggaggcggcggcatgggctctcagtcgccgagcttcagcgcgcccatggtggtgctcctcgtggcgctcatcgcggccttcttcttcatcgggttcttctccatctatatccggcggtgcggcggcgaggcctccacggggccgaccatcccggccgcggcgctggcggcgctgtcgcggcaggagcagcggagccggcggcagcgcgggctcgaccccgccgtggtcgagtcgttccccaccatgaagtacgccgaggcgagggagctccgcgacggcggcaaggacgccgtgctcgagtgcgccgtctgcctcagcgagttcgacgacgacgaggagctccggttgctgcccaagtgcagccacgccttccacccggactgcatcggggagtggctcgccggccacgtcacctgccctgtctgtcggtgcaaccttgcgcccgacgcggcggcggcggaagcgaacgtcgtctccggcgaggtggatggggagcagcaggaggaggaggtggtggtggccatcgacgtggaccgcgagggcgaggaggaggacgaggagaggcggagggaggcgatggagctcgagaggatcggcagccagcgccgcgcggtgcggtcgaggtcggggcggccgctgccgctgccgcggtcgcactcgacgggccactccctcgccacgacgcggctcggcgacgccggcgacctcgagcggttcacgctgcgcctgccggagcacgtgcgcagggagatggtcgccgccgccggcgaggagagcctgcgccgcaccgccgtccgggaaggccgcgtcggcggcggcgcccggagcgcgcggatcgggcggtccgaccggtggccgtcgttcatcgcgaggaccttctcctcgaggatcccgttctggtctgcgtcgaggagggtactcgacgccgcggaggccggagctgacgccgccgccaccaccaccaccacgacgccaacgtcaacggcgaggaccaagcgtgacaagacggccgccgccgcagatggctccgtgagctcagccaagggcagcgtccgcttcgactgtctcggcggcggcggcggcggcggcggcccgagcaacagagtcgtcgccttcgccaacgacgacgaggaggatgacgacgagaagccaatcgcccggcaagtttga
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| Protein seq | MPTPRPRHRHHALPLALALAAPLLLLAAADGQPNESRDKNNGGGGGGFMAPSGGGGGMGSQSPSFSAPMVVLLVALIAAFFFIGFFSIYIRRCGGEASTGPTIPAAALAALSRQEQRSRRQRGLDPAVVESFPTMKYAEARELRDGGKDAVLECAVCLSEFDDDEELRLLPKCSHAFHPDCIGEWLAGHVTCPVCRCNLAPDAAAAEANVVSGEVDGEQQEEEVVVAIDVDREGEEEDEERRREAMELERIGSQRRAVRSRSGRPLPLPRSHSTGHSLATTRLGDAGDLERFTLRLPEHVRREMVAAAGEESLRRTAVREGRVGGGARSARIGRSDRWPSFIARTFSSRIPFWSASRRVLDAAEAGADAAATTTTTTPTSTARTKRDKTAAAADGSVSSAKGSVRFDCLGGGGGGGGPSNRVVAFANDDEEDDDEKPIARQV |
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| Function | E3 ubiquitin-protein ligase ATL31 [UniProtKB/Swiss-Prot:Q8LGA5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0008180 | OsLima_06g0008180.01 | Chr06 | 6225570 | 6227353 | - | NAM | ||
| CDS seq | atgccgacgcctcgtcctcgccaccgccaccatgcgctcccgctcgcgctcgcgctcgccgcgccgctgctgctgctagccgcggcggacgggcagccgaacgagtcgagggacaagaacaacggcggcgggggaggtgggttcatggcgcccagcggcggaggcggcggcatgggctctcagtcgccgagcttcagcgcgcccatggtggtgctcctcgtggcgctcatcgcggccttcttcttcatcgggttcttctccatctatatccggcggtgcggcggcgaggcctccacggggccgaccatcccggccgcggcgctggcggcgctgtcgcggcaggagcagcggagccggcggcagcgcgggctcgaccccgccgtggtcgagtcgttccccaccatgaagtacgccgaggcgagggagctccgcgacggcggcaaggacgccgtgctcgagtgcgccgtctgcctcagcgagttcgacgacgacgaggagctccggttgctgcccaagtgcagccacgccttccacccggactgcatcggggagtggctcgccggccacgtcacctgccctgtctgtcggtgcaaccttgcgcccgacgcggcggcggcggaagcgaacgtcgtctccggcgaggtggatggggagcagcaggaggaggaggtggtggtggccatcgacgtggaccgcgagggcgaggaggaggacgaggagaggcggagggaggcgatggagctcgagaggatcggcagccagcgccgcgcggtgcggtcgaggtcggggcggccgctgccgctgccgcggtcgcactcgacgggccactccctcgccacgacgcggctcggcgacgccggcgacctcgagcggttcacgctgcgcctgccggagcacgtgcgcagggagatggtcgccgccgccggcgaggagagcctgcgccgcaccgccgtccgggaaggccgcgtcggcggcggcgcccggagcgcgcggatcgggcggtccgaccggtggccgtcgttcatcgcgaggaccttctcctcgaggatcccgttctggtctgcgtcgaggagggtactcgacgccgcggaggccggagctgacgccgccgccaccaccaccaccacgacgccaacgtcaacggcgaggaccaagcgtgacaagacggccgccgccgcagatggctccgtgagctcagccaagggcagcgtccgcttcgactgtctcggcggcggcggcggcggcggcggcccgagcaacagagtcgtcgccttcgccaacgacgacgaggaggatgacgacgagaagccaatcgcccggcaagtttga
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| Protein seq | MPTPRPRHRHHALPLALALAAPLLLLAAADGQPNESRDKNNGGGGGGFMAPSGGGGGMGSQSPSFSAPMVVLLVALIAAFFFIGFFSIYIRRCGGEASTGPTIPAAALAALSRQEQRSRRQRGLDPAVVESFPTMKYAEARELRDGGKDAVLECAVCLSEFDDDEELRLLPKCSHAFHPDCIGEWLAGHVTCPVCRCNLAPDAAAAEANVVSGEVDGEQQEEEVVVAIDVDREGEEEDEERRREAMELERIGSQRRAVRSRSGRPLPLPRSHSTGHSLATTRLGDAGDLERFTLRLPEHVRREMVAAAGEESLRRTAVREGRVGGGARSARIGRSDRWPSFIARTFSSRIPFWSASRRVLDAAEAGADAAATTTTTTPTSTARTKRDKTAAAADGSVSSAKGSVRFDCLGGGGGGGGPSNRVVAFANDDEEDDDEKPIARQV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0218300 | RBH | 0.845969 | 0.294386 | 1.751694 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g11450 | RBH | 0.544590 | 0.185461 | 0.422365 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0218300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0008130 | RBH | 0.0 | 3.043265 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0007980 | RBH | 0.070507 | 1.182405 | 0.642234 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0007990 | RBH | 0.0 | 0.0 | 0.775606 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0008120 | RBH | 0.019976 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0007990 | RBH | 0.0 | 3.821926 | 1.224554 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0101100 | RBH | 0.7031975 | 4.398843 | 4.9326095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0007730 | RBH | 0.0 | 0.088130 | 0.067717 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0101200 | RBH | 2.222421 | 10.037996 | 0.2182495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0034120 | RBH | 0.103061 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0008010 | RBH | 0.102185 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0008070 | RBH | 1.297891 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0008140 | RBH | 0.0 | 0.0 | 0.128969 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0007920 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G007830 | RBH | 0.0 | 0.0 | 0.417217 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0008100 | RBH | 0.0 | 0.0 | 0.0 |
