Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0006640 | OGI:06013490 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:4879411-4882020 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acttcaccttccaatgatcgaagcggaaagccaaatggcggaggcggcgtcgtacgaggagcagcggaggcggcaggtggaggcgaacaagcggaagctggaggagctccgcctccaccacctctccgccgccgtccgcgaatccgccgccaagccgtcgccggtcagattcccctcaccatttcttttctttttggatttcccctggtttttctcggtctttgattctctctggttgttttgtttgtgggtctctttctgatctgggcggttgccggtgggtgcaggtgaagcagcggaagaggaaggcgcgtgcgctgccgggcgccggcgaggatgccccgctccggcggtccggccgcgtcgccaacctccccgagaagcccaagtacagcgacgtatgtggagacagtgtgattgatgtgatagtttttaaaagatttcgtttcttctgttggttttattgaggaattaactcgttcaagattgcaatctttgatgggtttatgtgcaggagttccaagatttcgagaagaggataaggaggtatagtgaatgcgtgccccaaatctcccaatcgaaatttctgcatccagtgtggattatcagggatggttttctgagattcttgaactgtttgttcatcaggtcttatggcggcaagaggagggatttgtccaatcgagtttacgcgaccgacgagcaaagggactacgccatcaacgctgctcaagagctggaagaggagctcggctccgactacccaatcttcgtcaagcccatgcttcagtcccatgtcactggagggttctggctggtaagcctgtaacttcactctcatcttgctttgcatcatgtaggttgtagggatgaggcagctgattcttggggtgaatgaaattggtagagcctgccgacgcatttcagccggaagtatctgccgaagcgcgacgagactatccgtttggtggatgaggaggatgatgagtttgacaccctctatcttgccaacaagagggggctcagtggagggtggagggggttttccattgctcataagctagttgatggagattgtttggtgttccaacttatccagcgcacgaagttcaaggtgagtttggagttgttcgggcacggcacgaatgttatatgaagatctcctgaatctttgcacggttgatgataattctggttgatttgtagtagccgactaatcatgtgttaggtttattgatgtcttaaatcagaaaaacagttcatcaccagttcaccataaataactggaatgaatgtgtcatggactcatggtatcccaattttcaagcattcattgtttgcacatgttactgctataatttgttgagcctagccaggtaatgtatgtgtctaaatataggaaaatattgtgcaggaaacgttggttcttataaggcctaaccaggagaaatctacattagtgctaacgatgttttgtcttgtatcaaaatggtgcaggtctacataatcagagcaagttcctactatgaaactgacgactgatgtagaggctccaaatatctgtgattggggcacaggtgtgctgttcttgttatttttggcatgtgttgtagttggaatttgaatctatcgttcaaattgatagctctactagactactggtcttctgttggagcctgataagactttgccgttttcactttgaagatgtgaattactcccttttttagcaatcaggagttctgcagttttcacttggaagatgtgacatatgcagttttatgcgatggtagatatgcaatcaggagtgcataacttttgcctatatttgttttagcaattacgtgttattacgattataaaatttaaatcaatatatgcaatggtgtattgttctggaattactgttaatgaaatatgctagtaaaatttatggccagtttttaaaaatcgaccacaagaatcttaaaatgaaaaatatatagatacagagtacgtttaaaactgtctaacaaagcttcgtcttttctcccactgctcagctcttcttttcttctaatttgattattatctatcatacatgatgtaatgatactgacttgattccttgttaattggtcactttactttgcaggtcttctagtgaattaggttgacctgaattggagattgctaggccatcttcagtcttttgagtgatgaacaatgttcaaaatattaactacgtattaggttacttatggactagccatcctcagtcttttgatggcaaacaatgtcagaagtattaaattggcatataatttaccagctaataggctaagttgttagatttactttgagcttgcacagttcagaaatctgcactatgtaagggatatcattgcaattggtaactgaggatgctttttgatactattactccttatgtgatgcgtctgaattcctgatttcagtcatttcttgtaagttagcatgctttgtggactaggctacaagatttcatttacaccagggaagcaattcatcttatgttaacttgtctacttgagcatgttgttgtatggacattttgtgttctctctcaagcatccttcctggtacacaatc
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| CDS seq | atgatcgaagcggaaagccaaatggcggaggcggcgtcgtacgaggagcagcggaggcggcaggtggaggcgaacaagcggaagctggaggagctccgcctccaccacctctccgccgccgtccgcgaatccgccgccaagccgtcgccggtgaagcagcggaagaggaaggcgcgtgcgctgccgggcgccggcgaggatgccccgctccggcggtccggccgcgtcgccaacctccccgagaagcccaagtacagcgacgagttccaagatttcgagaagaggataaggaggtcttatggcggcaagaggagggatttgtccaatcgagtttacgcgaccgacgagcaaagggactacgccatcaacgctgctcaagagctggaagaggagctcggctccgactacccaatcttcgtcaagcccatgcttcagtcccatgtcactggagggttctggctgagcctgccgacgcatttcagccggaagtatctgccgaagcgcgacgagactatccgtttggtggatgaggaggatgatgagtttgacaccctctatcttgccaacaagagggggctcagtggagggtggagggggttttccattgctcataagctagttgatggagattgtttggtgttccaacttatccagcgcacgaagttcaaggtctacataatcagagcaagttcctactatgaaactgacgactga
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| Protein seq | MIEAESQMAEAASYEEQRRRQVEANKRKLEELRLHHLSAAVRESAAKPSPVKQRKRKARALPGAGEDAPLRRSGRVANLPEKPKYSDEFQDFEKRIRRSYGGKRRDLSNRVYATDEQRDYAINAAQELEEELGSDYPIFVKPMLQSHVTGGFWLSLPTHFSRKYLPKRDETIRLVDEEDDEFDTLYLANKRGLSGGWRGFSIAHKLVDGDCLVFQLIQRTKFKVYIIRASSYYETDD |
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| Function | B3 domain-containing protein Os06g0194400 [UniProtKB/Swiss-Prot:Q69V36] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0006640 | OsLima_06g0006640.01 | Chr06 | 4879411 | 4882020 | + | NAM | ||
| CDS seq | atgatcgaagcggaaagccaaatggcggaggcggcgtcgtacgaggagcagcggaggcggcaggtggaggcgaacaagcggaagctggaggagctccgcctccaccacctctccgccgccgtccgcgaatccgccgccaagccgtcgccggtgaagcagcggaagaggaaggcgcgtgcgctgccgggcgccggcgaggatgccccgctccggcggtccggccgcgtcgccaacctccccgagaagcccaagtacagcgacgagttccaagatttcgagaagaggataaggaggtcttatggcggcaagaggagggatttgtccaatcgagtttacgcgaccgacgagcaaagggactacgccatcaacgctgctcaagagctggaagaggagctcggctccgactacccaatcttcgtcaagcccatgcttcagtcccatgtcactggagggttctggctgagcctgccgacgcatttcagccggaagtatctgccgaagcgcgacgagactatccgtttggtggatgaggaggatgatgagtttgacaccctctatcttgccaacaagagggggctcagtggagggtggagggggttttccattgctcataagctagttgatggagattgtttggtgttccaacttatccagcgcacgaagttcaaggtctacataatcagagcaagttcctactatgaaactgacgactga
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| Protein seq | MIEAESQMAEAASYEEQRRRQVEANKRKLEELRLHHLSAAVRESAAKPSPVKQRKRKARALPGAGEDAPLRRSGRVANLPEKPKYSDEFQDFEKRIRRSYGGKRRDLSNRVYATDEQRDYAINAAQELEEELGSDYPIFVKPMLQSHVTGGFWLSLPTHFSRKYLPKRDETIRLVDEEDDEFDTLYLANKRGLSGGWRGFSIAHKLVDGDCLVFQLIQRTKFKVYIIRASSYYETDD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0194400 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g09420 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0194400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0006600 | RBH | 0.0 | 4.222258 | 0.501055 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0006430 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0006420 | RBH | 0.0 | 5.384682 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006550 | RBH | 0.0 | 0.119117 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0006420 | RBH | 2.113260 | 2.778039 | 0.909702 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0080000 | RBH | 1.675274 | 1.406774 | 2.55665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006290 | RBH | 0.077840 | 0.129041 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0080000 | RBH | 1.748038 | 0.189903 | 18.3565795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0006510 | RBH | 0.000000 | 7.821748 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0006540 | RBH | 0.000000 | 5.100365 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0006570 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0006420 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006260 | RBH | 0.213028 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0006540 | RBH | 0.383883 | 0.0 | 0.634019 |
