Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0005710 | OGI:06011510 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:4074861-4079554 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggcaattaatgcaggaatgcaaggatcttcaaatttatataggtaacctgtaaaatgctgtaaacttcttttcacattgaacttgtttagtggtcagaatgcaaaatataaaaagaggaaaacaaacttacgaagaaaccatggataccagaaggcatatattagaggaaagttgagtgtgaagatcacataaaatagacaggaaagaactgaactattgtaataataccaactgcgtgctgctttgacaaggcagaggtttcagataaagaatcctgcaaacaatgaagataggtaaatttgacattatcaaaacacaaagaatataatcaggtcaagttagtaggtctgagaaaaaagaacctaggactcacattgggggcaaggcaaccaaacacaacaaattaccaataggtagaacacgtatgcttgacttacctgtaatcatgtatgcattccttgttgatccagatcgttaaatatttctttgtaaacaacattgtgagtgctggtcacatgctcagttggactattctcaattagaatacgaagaccatcaggcgatgttacacgtgagagtgcgacataaagttgtccatgtgaaaagacagggctaggtaagtagacacacttggtttggaaccatcccttcgaacatgtttcccttaagcaatagtattcgtaactctggaaaagtttcatctatacatcttgggattgcaccactgaattggttatatcgcagatccattgtcttcaaattagcaccgaatggccagacaaggggaaatgttccattcagttcattctcacttaagtggagatatgtcaaattgggcaaagaaggcaaggggccagacagatggtttttggacagatcaagaaattgaagattcaaaaggctggatagacctgttggaattgatccagttaaatgattccctcttagattgaggataaaaaatagatgatttgaagctatgcaatttggaatggatccagtcaacttgttattgctaaaatcaaccacaccaagattcacgttggtgcaaatgctagtaggaatctcccctgagatattattatcgtttagcactagatgattcatcgacatagttgtaggaaaactagcagttatttcacccgatatgttgttgtaagataaatctaaagttgaaagattctccaagtgactaacggctgaaggaaatatgccttgaaaaaaattcttcgataagtttaggtagctcaaattagggaatgtgatgttgatgtccacaggaaggtccccgcttagcctgttataagatgcatctaaccatgataagttctgatttactgtggaaggaagaatgagtgatccaacaaatgagttatgtttcacactcaagtatgatagatatatattattctccagtaaccacgtcgggaaatgaccacttagattattgttcgaaacatcaattaggtataatccgtgctggtgtgataagaaacttggtacaacaccagaattggcattcaggttgcagtttgatagttcaagaacctgaagctgactagatatatttgcttctggattctcagtttgcacttggaagctggcactgttgcttgatagtctcaggtatttcagttggagatgatttgaaaaagagtttaggagtagcagaccttcaagctggttatgggaaagggaaagttgctcaagtaacgtcatgtttgcgaacgaaatagtggggaaccttgccgttaagagattatttgacagatcaagtactctgagaaaagttagatttctgatacatgatgggagcaccccaaagaaaaaatttccgtttagatgcaattctcgaagacttgtcatattgcaaacagctgtaaatgaaatgaactgtgtgatgtcagtacatgattcctacacatagctgctcctaattctaggctatgtttgcgagtactcactccgtcccacaatatagcaacctagtactagacgggatatcacctagtactacgtatctggacagggggcttgtccacatacgtagtactacgttgctatattatgaggtggaggaagtacatactaatcattgggaactgggaagtcatactaatgtttcaaaatagcataaagagcagagttaagtaagatttctttgacatgactatttgaaagaatactcccacaaggcagcaattaaaagtttttgcccttgggacttgggagcttctggttctaaactactgaagttaagcacactgtggtttggagttggtgtatctactttgtgatcacactaaatttgaattattttatcgattgaaggagaacaagatatattactaccataataatcatgtacttaaatttggtgccccaatgtaaagtgtaaagttattcacttttccaccacactcacatcggtgttcaaagtttgaacttcaaactgcatgccattaatttgtaagcgtggctgagattattttgaacaacgtagaaacagttgtaaaatattggaaccatgacacggtcatttactcatttactattgcacctttatgctttcacaaaaactttaaatgagatgccatacctcttgatatgttcccgaaaattccattccaacttagatcaagaatatccagcttcattttgcttaatcctataacatacaataaataaaccaaaataagagataaattccgaaataaaaaatcttttgtcaggaaaaaaactaatattgaaaatacaagcatgtgtgatgcttactttggacagtaaagtcattctttatggcgttcccaccgaggaatggggaacgcagagatgcaagtccaaccaagggcatgatactactatcattcaactcattttcagatagatcgaggatttccagttggcgtaaattagaccatacttcaaaacctgcagcgaatgatgaaaaacactataaatatgaaaattagtaaaaataaagactaatgcaacaggagttatccgactgcgtgcatacgtatgcacctacctagagaaggtccaacaaaaggacaccaaggtgaccattttacctaagcatcacacaccctagggagctccctgatcccttcctcggtgggtcacagggacaaggtgtttacatctagcaagacaaccttggtgtggtgaaatccaagttattctgaacagagacttcttagttgctacaacttgcggcccaacgattggtaaatccgtaaatgagtgattttaaagtcgttgagaaggtaccgaaagataccgtattttctactgtaaaattttgtacctctcagtaccggaggtacggaggtaccaaatttgcactaaaaattgtggtacctctcaaggattgtaaaatttctcttggtaaatatataatatcaatgttcctaaatgccttcttcgatatgtgaaacagcttgagggaggagaaggaaggaagacctgctgacctgcaccaggcatgcatcccgcgatgccggcatttcccaaggacaaattctgcagctcacggaatggaaggaacatactgcagttgagtaggccataccacgacggataagctgcatcaagatcaagggccgtgacacgccctgtgatggagctgcaggtcaccctctcccaccggcagcaatctctgctactccagtcaggcggattgccagccggccaaaggaacgcatcgcaaatgtccataagatgtttcctctcttcgtgcaaacaactgtcgcagaccaccaaggtcagcagaaccaagcaacaccaaatgcaggggttcctcatggccaccacaattcccaatcctcaaatacgctagctctcaagaaatttaacccacaggcaccgattttatactgatggtctcggtgcatcacactcaattaccactaccagcagattccacactccccatggtggcatcaagcaggtcgctgatttcgacggtaatgactgcctacctgaaatgaaaagaaatcggtgtcagcatcggcctcgtgactcggcgtcaaccgtgaagctagccagcccgcgcacattatctcttagtagaagaaaagcctgagatttctttattccagcaagcgagtggggcttggacttggagtcttggataagtggactgccggcatgcttgctccatggtagcaatgactaaatccacgagaaaataataataataataataataataataataataataataataataataatataaaaaaacaaagtagtttcctcggagatggatcggtcctggtcatctgcagactgctcacttttggacccaaaacctcgcattggggaatagcaatcagtctggtcatccaccttcatAaaaaaaaaaaaagtctggtcatccactcaaccagcccgttcttgggggcaacctgcaggaccttgcatcatcagtaggtcgaagttgctgtgaacggattaatggggaatacagagcttactgcgtcgacgccatcgtggaaggaattgaagaaatcggcgccaacggggagggttgaggccggccaggggcaccgcggggCccccgccgccggcagccaggaattggccttcgatgccatcgaggaaggaattgaagaagttggcgccgacggggaggggtcgcggtcgatgccgccgccgccggcaaccagggcagcatcggcatcgg
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| CDS seq | atgaggaacccctgcatttggtgttgcttggttctgctgaccttggtggtctgcgacagttgtttgcacgaagagaggaaacatcttatggacatttgcgatgcgttcctttggccggctggcaatccgcctgactggagtagcagagattgctgccggtgggagagggtgacctgcagctccatcacagggcgtgtcacggcccttgatcttgatgcagcttatccgtcgtggtatggcctactcaactgcagtatgttccttccattccgtgagctgcagaatttgtccttgggaaatgccggcatcgcgggatgcatgcctggtgcaggttttgaagtatggtctaatttacgccaactggaaatcctcgatctatctgaaaatgagttgaatgatagtagtatcatgcccttggttggacttgcatctctgcgttccccattcctcggtgggaacgccataaagaatgactttactgtccaaagattaagcaaaatgaagctggatattcttgatctaagttggaatggaattttcgggaacatatcaagagctgtttgcaatatgacaagtcttcgagaattgcatctaaacggaaattttttctttggggtgctcccatcatgtatcagaaatctaacttttctcagagtacttgatctgtcaaataatctcttaacggcaaggttccccactatttcgttcgcaaacatgacgttacttgagcaactttccctttcccataaccagcttgaaggtctgctactcctaaactctttttcaaatcatctccaactgaaatacctgagactatcaagcaacagtgccagcttccaagtgcaaactgagaatccagaagcaaatatatctagtcagcttcaggttcttgaactatcaaactgcaacctgaatgccaattctggtgttgtaccaagtttcttatcacaccagcacggattatacctaattgatgtttcgaacaataatctaagtggtcatttcccgacgtggttactggagaataatatatatctatcatacttgagtgtgaaacataactcatttgttggatcactcattcttccttccacagtaaatcagaacttatcatggttagatgcatcttataacaggctaagcggggaccttcctgtggacatcaacatcacattccctaatttgagctacctaaacttatcgaagaatttttttcaaggcatatttccttcagccgttagtcacttggagaatctttcaactttagatttatcttacaacaacatatcgggtgaaataactgctagttttcctacaactatgtcgatgaatcatctagtgctaaacgataataatatctcaggggagattcctactagcatttgcaccaacgtgaatcttggtgtggttgattttagcaataacaagttgactggatccattccaaattgcatagcttcaaatcatctattttttatcctcaatctaagagggaatcatttaactggatcaattccaacaggtctatccagccttttgaatcttcaatttcttgatctgtccaaaaaccatctgtctggccccttgccttctttgcccaatttgacatatctccacttaagtgagaatgaactgaatggaacatttccccttgtctggccattcggtgctaatttgaagacaatggatctgcgatataaccaattcagtggtgcaatcccaagatgtatagatgaaacttttccagagttacgaatactattgcttaagggaaacatgttcgaagggatggttccaaaccaagtgtgtctacttacc
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| Protein seq | MRNPCIWCCLVLLTLVVCDSCLHEERKHLMDICDAFLWPAGNPPDWSSRDCCRWERVTCSSITGRVTALDLDAAYPSWYGLLNCSMFLPFRELQNLSLGNAGIAGCMPGAGFEVWSNLRQLEILDLSENELNDSSIMPLVGLASLRSPFLGGNAIKNDFTVQRLSKMKLDILDLSWNGIFGNISRAVCNMTSLRELHLNGNFFFGVLPSCIRNLTFLRVLDLSNNLLTARFPTISFANMTLLEQLSLSHNQLEGLLLLNSFSNHLQLKYLRLSSNSASFQVQTENPEANISSQLQVLELSNCNLNANSGVVPSFLSHQHGLYLIDVSNNNLSGHFPTWLLENNIYLSYLSVKHNSFVGSLILPSTVNQNLSWLDASYNRLSGDLPVDINITFPNLSYLNLSKNFFQGIFPSAVSHLENLSTLDLSYNNISGEITASFPTTMSMNHLVLNDNNISGEIPTSICTNVNLGVVDFSNNKLTGSIPNCIASNHLFFILNLRGNHLTGSIPTGLSSLLNLQFLDLSKNHLSGPLPSLPNLTYLHLSENELNGTFPLVWPFGANLKTMDLRYNQFSGAIPRCIDETFPELRILLLKGNMFEGMVPNQVCLLT |
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| Function | Receptor-like protein 45 [UniProtKB/Swiss-Prot:F4J9A8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0005710 | OsLima_06g0005710.02 | Chr06 | 4077184 | 4079554 | - | NAM | ||
| CDS seq | atgaggaacccctgcatttggtgttgcttggttctgctgaccttggtggtctgcgacagttgtttgcacgaagagaggaaacatcttatggacatttgcgatgcgttcctttggccggctggcaatccgcctgactggagtagcagagattgctgccggtgggagagggtgacctgcagctccatcacagggcgtgtcacggcccttgatcttgatgcagcttatccgtcgtggtatggcctactcaactgcagtatgttccttccattccgtgagctgcagaatttgtccttgggaaatgccggcatcgcgggatgcatgcctggtgcaggttttgaagtatggtctaatttacgccaactggaaatcctcgatctatctgaaaatgagttgaatgatagtagtatcatgcccttggttggacttgcatctctgcgttccccattcctcggtgggaacgccataaagaatgactttactgtccaaagattaagcaaaatgaagctggatattcttgatctaagttggaatggaattttcgggaacatatcaagaggtatggcatctcatttaaagtttttgtga
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| Protein seq | MRNPCIWCCLVLLTLVVCDSCLHEERKHLMDICDAFLWPAGNPPDWSSRDCCRWERVTCSSITGRVTALDLDAAYPSWYGLLNCSMFLPFRELQNLSLGNAGIAGCMPGAGFEVWSNLRQLEILDLSENELNDSSIMPLVGLASLRSPFLGGNAIKNDFTVQRLSKMKLDILDLSWNGIFGNISRGMASHLKFL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0005710 | OsLima_06g0005710.01 | Chr06 | 4074861 | 4079554 | - | NAM | ||
| CDS seq | atgaggaacccctgcatttggtgttgcttggttctgctgaccttggtggtctgcgacagttgtttgcacgaagagaggaaacatcttatggacatttgcgatgcgttcctttggccggctggcaatccgcctgactggagtagcagagattgctgccggtgggagagggtgacctgcagctccatcacagggcgtgtcacggcccttgatcttgatgcagcttatccgtcgtggtatggcctactcaactgcagtatgttccttccattccgtgagctgcagaatttgtccttgggaaatgccggcatcgcgggatgcatgcctggtgcaggttttgaagtatggtctaatttacgccaactggaaatcctcgatctatctgaaaatgagttgaatgatagtagtatcatgcccttggttggacttgcatctctgcgttccccattcctcggtgggaacgccataaagaatgactttactgtccaaagattaagcaaaatgaagctggatattcttgatctaagttggaatggaattttcgggaacatatcaagagctgtttgcaatatgacaagtcttcgagaattgcatctaaacggaaattttttctttggggtgctcccatcatgtatcagaaatctaacttttctcagagtacttgatctgtcaaataatctcttaacggcaaggttccccactatttcgttcgcaaacatgacgttacttgagcaactttccctttcccataaccagcttgaaggtctgctactcctaaactctttttcaaatcatctccaactgaaatacctgagactatcaagcaacagtgccagcttccaagtgcaaactgagaatccagaagcaaatatatctagtcagcttcaggttcttgaactatcaaactgcaacctgaatgccaattctggtgttgtaccaagtttcttatcacaccagcacggattatacctaattgatgtttcgaacaataatctaagtggtcatttcccgacgtggttactggagaataatatatatctatcatacttgagtgtgaaacataactcatttgttggatcactcattcttccttccacagtaaatcagaacttatcatggttagatgcatcttataacaggctaagcggggaccttcctgtggacatcaacatcacattccctaatttgagctacctaaacttatcgaagaatttttttcaaggcatatttccttcagccgttagtcacttggagaatctttcaactttagatttatcttacaacaacatatcgggtgaaataactgctagttttcctacaactatgtcgatgaatcatctagtgctaaacgataataatatctcaggggagattcctactagcatttgcaccaacgtgaatcttggtgtggttgattttagcaataacaagttgactggatccattccaaattgcatagcttcaaatcatctattttttatcctcaatctaagagggaatcatttaactggatcaattccaacaggtctatccagccttttgaatcttcaatttcttgatctgtccaaaaaccatctgtctggccccttgccttctttgcccaatttgacatatctccacttaagtgagaatgaactgaatggaacatttccccttgtctggccattcggtgctaatttgaagacaatggatctgcgatataaccaattcagtggtgcaatcccaagatgtatagatgaaacttttccagagttacgaatactattgcttaagggaaacatgttcgaagggatggttccaaaccaagtgtgtctacttacc
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| Protein seq | MRNPCIWCCLVLLTLVVCDSCLHEERKHLMDICDAFLWPAGNPPDWSSRDCCRWERVTCSSITGRVTALDLDAAYPSWYGLLNCSMFLPFRELQNLSLGNAGIAGCMPGAGFEVWSNLRQLEILDLSENELNDSSIMPLVGLASLRSPFLGGNAIKNDFTVQRLSKMKLDILDLSWNGIFGNISRAVCNMTSLRELHLNGNFFFGVLPSCIRNLTFLRVLDLSNNLLTARFPTISFANMTLLEQLSLSHNQLEGLLLLNSFSNHLQLKYLRLSSNSASFQVQTENPEANISSQLQVLELSNCNLNANSGVVPSFLSHQHGLYLIDVSNNNLSGHFPTWLLENNIYLSYLSVKHNSFVGSLILPSTVNQNLSWLDASYNRLSGDLPVDINITFPNLSYLNLSKNFFQGIFPSAVSHLENLSTLDLSYNNISGEITASFPTTMSMNHLVLNDNNISGEIPTSICTNVNLGVVDFSNNKLTGSIPNCIASNHLFFILNLRGNHLTGSIPTGLSSLLNLQFLDLSKNHLSGPLPSLPNLTYLHLSENELNGTFPLVWPFGANLKTMDLRYNQFSGAIPRCIDETFPELRILLLKGNMFEGMVPNQVCLLT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.026093 | 0.191353 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0179800 | RBH | 0.000000 | 0.083682 | 0.433876 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g08154 | RBH | 0.000000 | 0.056283 | 0.111688 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0179800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0005630 | RBH | 0.316160 | 0.000000 | 3.504141 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005480 | RBH | 0.054176 | 0.620677 | 1.632604 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0005440 | RBH | 0.0 | 0.000000 | 2.375878 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0005650 | RBH | 0.016470 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0005520 | RBH | 0.960645 | 6.055839 | 4.703740 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0068200 | RBH | 1.419406 | 4.083785 | 5.7530595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0005380 | RBH | 0.0 | 0.0 | 0.467739 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0067500 | RBH | 1.093856 | 1.914837 | 6.9016895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0005550 | RBH | 0.327926 | 9.264383 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0005560 | RBH | 0.739504 | 5.959625 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0005590 | RBH | 0.000000 | 0.300794 | 0.217726 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0005410 | RBH | 0.000000 | 0.437159 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G005320 | RBH | 0.065185 | 0.380584 | 0.437156 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0005550 | RBH | 0.362079 | 5.948216 | 0.918028 |
