Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0004860 | OGI:06009660 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:3450296-3453051 | ||||||||
| Gene Symbol | RLCK198, OsRLCK198, SDRLK-37 | ||||||||||
| DNA seq | tgtggaaatagatgcgccttatgcatatagaacaaagtatctaaacaaatagactaatggttatggtgaatattacaatttgatggaatacaacaactactaaaatcacatttgacattttaccttaaatctggcgcccattgacttgtcttttcaacaccataccttattatttttctcacaacacacatatcagcttagatagagttgtagcaatagcaaggacattattccacaagagaaagcaggatttcaaccacactgctcatgctcggtcttctgcgcctatcttcttccacacatgacactgcaatttttagcactgttgctgcctgtgaatagttgaattctccattcatcctgcagtcaacaaagtccagcagccatgattgatcttcgctagctaatttctcttttagaacatcagcggtgcgcttaacagccatttccacctcctcttcaccatcaaccacccatctggaaacccgattcccttttactaactcaagaagcactactccatagctgtaaacatcagccttgcctgtgatcggaagatttagagcccattctggcgcaatgtaccctctagtcccatgcacttttgattgggtttctgtgtttgatcctcgactaactagtttcaccagtccaaaatcagcaatctttggctcaaaatctttatctaacaatatgttctctggtttcacatcacaatgcacaatccactcaagacattcgtggtggagataggccaatcctttcgctaccccaagtgcgatattgtacctttggctccactgtagcacaggaaacaaacccagattgtcagataatactctgtctagagaaccattctcggcaaactcagaaaccaagagtttgtttgtcttttcggcacaaaacccccaaattctgaccagattcatatgataaactctccctatgatacttagctctgacctgaactcctgttctccgtggatcacatcatttagtttcttcacagcgaccttccttttatcatcgaggattcctttgtaaactgctcctgatcctccacttcctagcatttcttggaaacaatctgttgccttctccaactccttgtagttgaaccttcggaattgactggaaattatggtgtaaccttcgtcttgaatctctggtcttctcccccatttgttagcagcccaacatccaactgtaattaaagtcatttcaactacaagtaatgtcaatgctgaagaaaggaagtaaccaaacttgatattggaattgttacccgtgagcatttgtgatgagggataggcttctttttcagtcatcacgcaagcatgcgatggtttggaagccaacaattgtgaatagggcgtcgcattgggaagttttagatagaaatcattatagtggtcttgggacttcctgccattaaaaagcaaggccttcaaaaaacatttccctatacccttgtggtattcaaaggcttgacaatcagcattgtccaagcacatccttttgcactgccagagtgtcactggcttggagtagttcaagtcatagccatagaagtcggtgtggggtatcttcttgaatatgaatccgtggttagacttgctgtttgcgttgttgttccaaatgagtgtggcgtttgccttgtaactgcacccttggctccagtcacctggtttaaccatctcaaagccttcgagacaagaacagcgagggtctggtttgtaaatgcacaaactgtttttaccacacactccatgtatttcacatacttgacagaatgccatccaagtgacagaccattttccagtggtcatgtttagactatacaacctaaggtttccatcataatccagtgtcaacctcctcatgacatccttctgaccatgatcagatgcttcaaagttgagctggtcagtagctatgaaccaaccatcagagtctagaaccccatgtcggctactgtaataagtggtcctaccattgtcccatgataagaaggcaggattaggccaatatatgctactagtctcagggccattgtatataagactcagcaaattgttactgtcaaagaaaaaggtgtataaacctgaatagggtaaccccctagcggatgcagacaccagctttgtatctcgagtcatcggctgcaatggcagaagtgtgtcggttggcgagtcgaagctttcccagaggcactgaccttctgaatccatgacgatcaggttgccactgttctgaagctctgcacggctagcaccagtggccgtggtgttggtgctccatacaaccgtgccgttgtaatcaacaagggccaagcccccgtccttccggaaggtgagcttggagcccttgccgttcaccggagcatcacttttggccgtccacgccaccgtcttctccgacgatctggagaaccagatggagaaggtgaaggcgttggtggccaccttgtagaagccacaggcgaagtcgccattaggcgacactaggatggtcttggtatcatcctctgtggagacagatgaacctctagcaaggtagcttttcttatcttctgcaagagcagtggtgagcatgagaaggaaggagattaatgtggtgaaaatgtgtacgcctctcatggccatgggcaaggaattgcctgtgaatgtgatcatctaatgcaagggaaaccagtgtgccggagtctcttgcatataaatcaagattgttgagtaaaaagagccagtaattaccgt
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| CDS seq | atgagaggcgtacacattttcaccacattaatctccttccttctcatgctcaccactgctcttgcagaagataagaaaagctaccttgctagaggttcatctgtctccacagaggatgataccaagaccatcctagtgtcgcctaatggcgacttcgcctgtggcttctacaaggtggccaccaacgccttcaccttctccatctggttctccagatcgtcggagaagacggtggcgtggacggccaaaagtgatgctccggtgaacggcaagggctccaagctcaccttccggaaggacgggggcttggcccttgttgattacaacggcacggttgtatggagcaccaacaccacggccactggtgctagccgtgcagagcttcagaacagtggcaacctgatcgtcatggattcagaaggtcagtgcctctgggaaagcttcgactcgccaaccgacacacttctgccattgcagccgatgactcgagatacaaagctggtgtctgcatccgctagggggttaccctattcaggtttatacacctttttctttgacagtaacaatttgctgagtcttatatacaatggccctgagactagtagcatatattggcctaatcctgccttcttatcatgggacaatggtaggaccacttattacagtagccgacatggggttctagactctgatggttggttcatagctactgaccagctcaactttgaagcatctgatcatggtcagaaggatgtcatgaggaggttgacactggattatgatggaaaccttaggttgtatagtctaaacatgaccactggaaaatggtctgtcacttggatggcattctgtcaagtatgtgaaatacatggagtgtgtggtaaaaacagtttgtgcatttacaaaccagaccctcgctgttcttgtctcgaaggctttgagatggttaaaccaggtgactggagccaagggtgcagttacaaggcaaacgccacactcatttggaacaacaacgcaaacagcaagtctaaccacggattcatattcaagaagataccccacaccgacttctatggctatgacttgaactactccaagccagtgacactctggcagtgcaaaaggatgtgcttggacaatgctgattgtcaagcctttgaataccacaagggtatagggaaatgttttttgaaggccttgctttttaatggcaggaagtcccaagaccactataatgatttctatctaaaacttcccaatgcgacgccctattcacaattgttggcttccaaaccatcgcatgcttgcgtgatgactgaaaaagaagcctatccctcatcacaaatgctcacgggtaacaattccaatatcaagtttggttacttcctttcttcagcattgacattacttgtagttgaaatgactttaattacagttggatgttgggctgctaacaaatgggggagaagaccagagattcaagacgaaggttacaccataatttccagtcaattccgaaggttcaactacaaggagttggagaaggcaacagattgtttccaagaaatgctaggaagtggaggatcaggagcagtttacaaaggaatcctcgatgataaaaggaaggtcgctgtgaagaaactaaatgatgtgatccacggagaacaggagttcaggtcagagctaagtatcatagggagagtttatcatatgaatctggtcagaatttgggggttttgtgccgaaaagacaaacaaactcttggtttctgagtttgccgagaatggttctctagacagagtattatctgacaatctgggtttgtttcctgtgctacagtggagccaaaggtacaatatcgcacttggggtagcgaaaggattggcctatctccaccacgaatgtcttgagtggattgtgcattgtgatgtgaaaccagagaacatattgttagataaagattttgagccaaagattgctgattttggactggtgaaactagttagtcgaggatcaaacacagaaacccaatcaaaagtgcatgggactagagggtacattgcgccagaatgggctctaaatcttccgatcacaggcaaggctgatgtttacagctatggagtagtgcttcttgagttagtaaaagggaatcgggtttccagatgggtggttgatggtgaagaggaggtggaaatggctgttaagcgcaccgctgatgttctaaaagagaaattagctagcgaagatcaatcatggctgctggactttgttgactgcaggatgaatggagaattcaactattcacaggcagcaacagtgctaaaaattgcagtgtcatgtgtggaagaagataggcgcagaagaccgagcatgagcagtgtggttgaaatcctgctttctcttgtggaataa
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| Protein seq | MRGVHIFTTLISFLLMLTTALAEDKKSYLARGSSVSTEDDTKTILVSPNGDFACGFYKVATNAFTFSIWFSRSSEKTVAWTAKSDAPVNGKGSKLTFRKDGGLALVDYNGTVVWSTNTTATGASRAELQNSGNLIVMDSEGQCLWESFDSPTDTLLPLQPMTRDTKLVSASARGLPYSGLYTFFFDSNNLLSLIYNGPETSSIYWPNPAFLSWDNGRTTYYSSRHGVLDSDGWFIATDQLNFEASDHGQKDVMRRLTLDYDGNLRLYSLNMTTGKWSVTWMAFCQVCEIHGVCGKNSLCIYKPDPRCSCLEGFEMVKPGDWSQGCSYKANATLIWNNNANSKSNHGFIFKKIPHTDFYGYDLNYSKPVTLWQCKRMCLDNADCQAFEYHKGIGKCFLKALLFNGRKSQDHYNDFYLKLPNATPYSQLLASKPSHACVMTEKEAYPSSQMLTGNNSNIKFGYFLSSALTLLVVEMTLITVGCWAANKWGRRPEIQDEGYTIISSQFRRFNYKELEKATDCFQEMLGSGGSGAVYKGILDDKRKVAVKKLNDVIHGEQEFRSELSIIGRVYHMNLVRIWGFCAEKTNKLLVSEFAENGSLDRVLSDNLGLFPVLQWSQRYNIALGVAKGLAYLHHECLEWIVHCDVKPENILLDKDFEPKIADFGLVKLVSRGSNTETQSKVHGTRGYIAPEWALNLPITGKADVYSYGVVLLELVKGNRVSRWVVDGEEEVEMAVKRTADVLKEKLASEDQSWLLDFVDCRMNGEFNYSQAATVLKIAVSCVEEDRRRRPSMSSVVEILLSLVE |
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| Function | Putative receptor protein kinase ZmPK1 [UniProtKB/Swiss-Prot:P17801] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0004860 | OsLima_06g0004860.01 | Chr06 | 3450523 | 3452940 | - | NAM | ||
| CDS seq | atgagaggcgtacacattttcaccacattaatctccttccttctcatgctcaccactgctcttgcagaagataagaaaagctaccttgctagaggttcatctgtctccacagaggatgataccaagaccatcctagtgtcgcctaatggcgacttcgcctgtggcttctacaaggtggccaccaacgccttcaccttctccatctggttctccagatcgtcggagaagacggtggcgtggacggccaaaagtgatgctccggtgaacggcaagggctccaagctcaccttccggaaggacgggggcttggcccttgttgattacaacggcacggttgtatggagcaccaacaccacggccactggtgctagccgtgcagagcttcagaacagtggcaacctgatcgtcatggattcagaaggtcagtgcctctgggaaagcttcgactcgccaaccgacacacttctgccattgcagccgatgactcgagatacaaagctggtgtctgcatccgctagggggttaccctattcaggtttatacacctttttctttgacagtaacaatttgctgagtcttatatacaatggccctgagactagtagcatatattggcctaatcctgccttcttatcatgggacaatggtaggaccacttattacagtagccgacatggggttctagactctgatggttggttcatagctactgaccagctcaactttgaagcatctgatcatggtcagaaggatgtcatgaggaggttgacactggattatgatggaaaccttaggttgtatagtctaaacatgaccactggaaaatggtctgtcacttggatggcattctgtcaagtatgtgaaatacatggagtgtgtggtaaaaacagtttgtgcatttacaaaccagaccctcgctgttcttgtctcgaaggctttgagatggttaaaccaggtgactggagccaagggtgcagttacaaggcaaacgccacactcatttggaacaacaacgcaaacagcaagtctaaccacggattcatattcaagaagataccccacaccgacttctatggctatgacttgaactactccaagccagtgacactctggcagtgcaaaaggatgtgcttggacaatgctgattgtcaagcctttgaataccacaagggtatagggaaatgttttttgaaggccttgctttttaatggcaggaagtcccaagaccactataatgatttctatctaaaacttcccaatgcgacgccctattcacaattgttggcttccaaaccatcgcatgcttgcgtgatgactgaaaaagaagcctatccctcatcacaaatgctcacgggtaacaattccaatatcaagtttggttacttcctttcttcagcattgacattacttgtagttgaaatgactttaattacagttggatgttgggctgctaacaaatgggggagaagaccagagattcaagacgaaggttacaccataatttccagtcaattccgaaggttcaactacaaggagttggagaaggcaacagattgtttccaagaaatgctaggaagtggaggatcaggagcagtttacaaaggaatcctcgatgataaaaggaaggtcgctgtgaagaaactaaatgatgtgatccacggagaacaggagttcaggtcagagctaagtatcatagggagagtttatcatatgaatctggtcagaatttgggggttttgtgccgaaaagacaaacaaactcttggtttctgagtttgccgagaatggttctctagacagagtattatctgacaatctgggtttgtttcctgtgctacagtggagccaaaggtacaatatcgcacttggggtagcgaaaggattggcctatctccaccacgaatgtcttgagtggattgtgcattgtgatgtgaaaccagagaacatattgttagataaagattttgagccaaagattgctgattttggactggtgaaactagttagtcgaggatcaaacacagaaacccaatcaaaagtgcatgggactagagggtacattgcgccagaatgggctctaaatcttccgatcacaggcaaggctgatgtttacagctatggagtagtgcttcttgagttagtaaaagggaatcgggtttccagatgggtggttgatggtgaagaggaggtggaaatggctgttaagcgcaccgctgatgttctaaaagagaaattagctagcgaagatcaatcatggctgctggactttgttgactgcaggatgaatggagaattcaactattcacaggcagcaacagtgctaaaaattgcagtgtcatgtgtggaagaagataggcgcagaagaccgagcatgagcagtgtggttgaaatcctgctttctcttgtggaataa
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| Protein seq | MRGVHIFTTLISFLLMLTTALAEDKKSYLARGSSVSTEDDTKTILVSPNGDFACGFYKVATNAFTFSIWFSRSSEKTVAWTAKSDAPVNGKGSKLTFRKDGGLALVDYNGTVVWSTNTTATGASRAELQNSGNLIVMDSEGQCLWESFDSPTDTLLPLQPMTRDTKLVSASARGLPYSGLYTFFFDSNNLLSLIYNGPETSSIYWPNPAFLSWDNGRTTYYSSRHGVLDSDGWFIATDQLNFEASDHGQKDVMRRLTLDYDGNLRLYSLNMTTGKWSVTWMAFCQVCEIHGVCGKNSLCIYKPDPRCSCLEGFEMVKPGDWSQGCSYKANATLIWNNNANSKSNHGFIFKKIPHTDFYGYDLNYSKPVTLWQCKRMCLDNADCQAFEYHKGIGKCFLKALLFNGRKSQDHYNDFYLKLPNATPYSQLLASKPSHACVMTEKEAYPSSQMLTGNNSNIKFGYFLSSALTLLVVEMTLITVGCWAANKWGRRPEIQDEGYTIISSQFRRFNYKELEKATDCFQEMLGSGGSGAVYKGILDDKRKVAVKKLNDVIHGEQEFRSELSIIGRVYHMNLVRIWGFCAEKTNKLLVSEFAENGSLDRVLSDNLGLFPVLQWSQRYNIALGVAKGLAYLHHECLEWIVHCDVKPENILLDKDFEPKIADFGLVKLVSRGSNTETQSKVHGTRGYIAPEWALNLPITGKADVYSYGVVLLELVKGNRVSRWVVDGEEEVEMAVKRTADVLKEKLASEDQSWLLDFVDCRMNGEFNYSQAATVLKIAVSCVEEDRRRRPSMSSVVEILLSLVE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0004860 | OsLima_06g0004860.02 | Chr06 | 3450296 | 3453051 | - | IsoSeq | ||
| CDS seq | atggagtgtgtggtaaaaacagtttgtgcatttacaaaccagaccctcgctgttcttgtctcgaaggctttgagatggttaaaccaggtgactggagccaagggtgcagttacaaggcaaacgccacactcatttggaacaacaacgcaaacagcaagtctaaccacggattcatattcaagaagataccccacaccgacttctatggctatg
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| Protein seq | MECVVKTVCAFTNQTLAVLVSKALRWLNQVTGAKGAVTRQTPHSFGTTTQTASLTTDSYSRRYPTPTSMAM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.034262 | 0.025126 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0165500 | RBH | 1.218456 | 0.482138 | 0.322263 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06960 | RBH | 0.792487 | 0.309830 | 0.094015 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0165500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004820 | RBH | 0.0 | 0.0 | 1.171131 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004740 | SBH | 0.0 | 0.331004 | 0.477927 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004660 | RBH | 0.154913 | 1.665644 | 3.401610 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004850 | RBH | 0.0 | 0.021621 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004740 | RBH | 1.748625 | 0.0 | 2.838769 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0057200 | RBH | 0.6516145 | 0.738045 | 0.4423045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004600 | RBH | 0.142815 | 0.0 | 0.261351 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0057000 | RBH | 0.3054395 | 0.211881 | 2.957895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0008290 | SBH | 0.012054 | 0.026519 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004710 | RBH | 0.203045 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004720 | RBH | 0.879990 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004740 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004610 | RBH | 0.087781 | 0.515492 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004500 | RBH | 0.058240 | 0.989002 | 0.562609 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004770 | RBH | 0.174332 | 0.0 | 1.000007 |
