Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0002210 | OGI:06004610 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:1739687-1740617 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agctggcaatcacaggcaaacagattacgaacaaatctccatatagtaaacgaatattaatagtctttaacactgttttgcttaaccgcaaaatccaaagaacggcaataacatttgattttgagtctttaaccgaaccctgtttttacactaattaaccgaccaaaccctattacaaagctgctaatgaaaacgagatctaaaacgcggaagcgagaggggaatcaacaagttgaccacgtcacgtcgtcgtcgttgatccccccagatcgcttcggcgctacgcaacgcaaccgcgtcgaaggcggcggcttacgcgcgctcgccgcggatgcggcgggcgagctggatgtccttgggcatgatggtgacacgcttggcgtggatggcgcagaggttggtgtcctcgaagagcccgacgaggtaggcctcggcggcctcctggagggcgagcaccgcgtggctctggaagcggaggtcggtcttgaagtcctgcgcgatctcgcggacgaggcgctggaaggggagcttgcggatcaggagctccgtgctcttctggtacttgcggatctcgcggagcgccaccgtccccggcctgtagcggtggggcttcttcacgccgccggtggtcggagcagacttcctcgccgcctacacaacaacacaaatcagcaaaaccgcaaaccctagaaccacccaaatcacaaagcaccagatcggaacgggagaaggagatgaaacgacgacgccggtacgcaccttggtggcgagctgcttcctcggggccttgccgccggtggacttgcgggcggtctgcttcgtacgggccatctcctcttcgcttctcggcggcgacttggctttctcttgcggtggatttgggggaaatcgaaatcgagagcgaccaaactggcgtggaaaggcgaacagt
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| CDS seq | atggcccgtacgaagcagaccgcccgcaagtccaccggcggcaaggccccgaggaagcagctcgccaccaaggcggcgaggaagtctgctccgaccaccggcggcgtgaagaagccccaccgctacaggccggggacggtggcgctccgcgagatccgcaagtaccagaagagcacggagctcctgatccgcaagctccccttccagcgcctcgtccgcgagatcgcgcaggacttcaagaccgacctccgcttccagagccacgcggtgctcgccctccaggaggccgccgaggcctacctcgtcgggctcttcgaggacaccaacctctgcgccatccacgccaagcgtgtcaccatcatgcccaaggacatccagctcgcccgccgcatccgcggcgagcgcgcgtaa
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Function | Histone H3.3 [UniProtKB/Swiss-Prot:Q71H73] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0002210 | OsLima_06g0002210.01 | Chr06 | 1739687 | 1740617 | - | NAM | ||
| CDS seq | atggcccgtacgaagcagaccgcccgcaagtccaccggcggcaaggccccgaggaagcagctcgccaccaaggcggcgaggaagtctgctccgaccaccggcggcgtgaagaagccccaccgctacaggccggggacggtggcgctccgcgagatccgcaagtaccagaagagcacggagctcctgatccgcaagctccccttccagcgcctcgtccgcgagatcgcgcaggacttcaagaccgacctccgcttccagagccacgcggtgctcgccctccaggaggccgccgaggcctacctcgtcgggctcttcgaggacaccaacctctgcgccatccacgccaagcgtgtcaccatcatgcccaaggacatccagctcgcccgccgcatccgcggcgagcgcgcgtaa
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0002210 | OsLima_06g0002210.02 | Chr06 | 1739766 | 1740617 | - | IsoSeq | ||
| CDS seq | tgttcgcctttccacgccagtttggtcgctctcgatttcgatttcccccaaatccaccgcaagagaaagccaagtcgccgccgagaagcgaagaggagatggcccgtacgaagcagaccgcccgcaagtccaccggcggcaaggccccgaggaagcagctcgccaccaaggtgcgtaccggcgtcgtcgtttcatctccttctcccgttccgatctggtgct
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| Protein seq | CSPFHASLVALDFDFPQIHRKRKPSRRREAKRRWPVRSRPPASPPAARPRGSSSPPRCVPASSFHLLLPFRSGA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.996839 | 2.341044 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0130900 | RBH | 69.452141 | 68.101715 | 94.539055 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g04030 | RBH | 45.617001 | 44.416283 | 23.589098 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0130900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004400 | RBH | 0.000000 | 10.398747 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0002180 | RBH | 3.352329 | 30.645050 | 29.186939 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0002130 | RBH | 38.234035 | 77.550789 | 62.856796 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0002130 | RBH | 4.895595 | 5.541222 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0002130 | RBH | 48.881958 | 187.964523 | 123.544121 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0026000 | RBH | 233.633705 | 361.897125 | 497.1544345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0002110 | RBH | 7.214873 | 11.679960 | 10.142509 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0027400 | RBH | 352.2960665 | 389.135178 | 489.958801 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013090 | SBH | 0.0 | 0.634512 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0002080 | RBH | 7.321792 | 123.722122 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0002070 | RBH | 24.856354 | 156.225815 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0002090 | RBH | 18.384733 | 17.214954 | 25.401823 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0001950 | RBH | 5.601934 | 71.744232 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G002030 | RBH | 14.003225 | 41.083252 | 44.595490 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004300 | SBH | 0.000000 | 14.427197 | 0.000000 |
