Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0001400 | OGI:06002780 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:1206332-1207067 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgacgacgaagctgcagcctccttcacctagcagatgtagcactaagcagtacatcttcctcgctctggcgggaactctcgtcaccatcatcatcgtcatcgccatgtccgccctcttctgccccgcggagattgatttctccatcacaaaagccacccacgtcgtgcctaagcagctgggaggggtgaacgtgggcctcaccgtcgccgctgccaaccccgggtggcgcgccgccgtagagtaccgcagcttctccgtcgacctgatgtacacgccggacaagggtgtgccgtcaacgatctacggccagatcttgacggtgcgcacgccgttcgtgcagccgccgcggaacacgacggccatcctggtgcagatctacgtcgcggccaagtactggaaccagtatctgcaaggcaagacaaacagcacaacgatgagcgtcaaggtgacggccaccgtgcgcttcatgatcatcgggaaggcctacaccaggttgtatgacatcgctgtcttgtgcgacctcggcttctctttgttcgacaacgctaccgtatcattcaataatactactgccaattgtgttgctgcttagtaagcctagctagttaattatatatatgcatatgcatgcccgcaattaattggatcgcttcatctatttatctatgtctgtctgtctgtctgtctgttttattatatgtatgcatgtaagtagggtacaaaatcgatga
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| CDS seq | atggcgacgacgaagctgcagcctccttcacctagcagatgtagcactaagcagtacatcttcctcgctctggcgggaactctcgtcaccatcatcatcgtcatcgccatgtccgccctcttctgccccgcggagattgatttctccatcacaaaagccacccacgtcgtgcctaagcagctgggaggggtgaacgtgggcctcaccgtcgccgctgccaaccccgggtggcgcgccgccgtagagtaccgcagcttctccgtcgacctgatgtacacgccggacaagggtgtgccgtcaacgatctacggccagatcttgacggtgcgcacgccgttcgtgcagccgccgcggaacacgacggccatcctggtgcagatctacgtcgcggccaagtactggaaccagtatctgcaaggcaagacaaacagcacaacgatgagcgtcaaggtgacggccaccgtgcgcttcatgatcatcgggaaggcctacaccaggttgtatgacatcgctgtcttgtgcgacctcggcttctctttggtacaaaatcgatga
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| Protein seq | MATTKLQPPSPSRCSTKQYIFLALAGTLVTIIIVIAMSALFCPAEIDFSITKATHVVPKQLGGVNVGLTVAAANPGWRAAVEYRSFSVDLMYTPDKGVPSTIYGQILTVRTPFVQPPRNTTAILVQIYVAAKYWNQYLQGKTNSTTMSVKVTATVRFMIIGKAYTRLYDIAVLCDLGFSLVQNR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0001400 | OsLima_06g0001400.01 | Chr06 | 1206332 | 1207067 | + | NAM | ||
| CDS seq | atggcgacgacgaagctgcagcctccttcacctagcagatgtagcactaagcagtacatcttcctcgctctggcgggaactctcgtcaccatcatcatcgtcatcgccatgtccgccctcttctgccccgcggagattgatttctccatcacaaaagccacccacgtcgtgcctaagcagctgggaggggtgaacgtgggcctcaccgtcgccgctgccaaccccgggtggcgcgccgccgtagagtaccgcagcttctccgtcgacctgatgtacacgccggacaagggtgtgccgtcaacgatctacggccagatcttgacggtgcgcacgccgttcgtgcagccgccgcggaacacgacggccatcctggtgcagatctacgtcgcggccaagtactggaaccagtatctgcaaggcaagacaaacagcacaacgatgagcgtcaaggtgacggccaccgtgcgcttcatgatcatcgggaaggcctacaccaggttgtatgacatcgctgtcttgtgcgacctcggcttctctttggtacaaaatcgatga
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| Protein seq | MATTKLQPPSPSRCSTKQYIFLALAGTLVTIIIVIAMSALFCPAEIDFSITKATHVVPKQLGGVNVGLTVAAANPGWRAAVEYRSFSVDLMYTPDKGVPSTIYGQILTVRTPFVQPPRNTTAILVQIYVAAKYWNQYLQGKTNSTTMSVKVTATVRFMIIGKAYTRLYDIAVLCDLGFSLVQNR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.180460 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0119900 | RBH | 0.0 | 0.499751 | 0.595525 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02940 | RBH | 0.0 | 0.334124 | 0.152387 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0119900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0001470 | RBH | 0.573273 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0001420 | RBH | 0.280306 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0001380 | RBH | 0.378760 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0001380 | RBH | 0.077984 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0001390 | RBH | 1.615486 | 0.0 | 1.115177 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0017300 | RBH | 5.5817875 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0001300 | RBH | 0.077528 | 0.0 | 0.326346 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0019000 | RBH | 5.4176215 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0001430 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0001400 | RBH | 0.086810 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0001360 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0001410 | RBH | 0.409699 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0001270 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G001330 | RBH | 0.0 | 0.0 | 1.342061 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0001400 | RBH | 1.173882 | 0.000000 | 6.589883 |
