Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0001360 | OGI:06002450 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:994912-996822 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagcaggcggcgctccggaatcgaatggccttgccggggacgtcgtacaccacctccagcgtgcgctgctgaacgttgccgatgaaccctggcatgcggtcggtggcggtgggcgcgaaggcgaggcagccttggagcaggatccccgccgcgtcgaggttgacggtggccccgccgtcgaataccagggcgatgctgggcagggtgatgctgcggacgccggtgaagtcgtagcacgtgtcgaggatggacaccggcggcgccgtccggtacatggtcatcgcgctcctgaacgccgcgcgcagcgcctggtacgccgtcggcggcagccgcgagatgacgatggtggaggcgatcacagagctggcggagaagacggtgggtggcacgggcagagggcgccccgccacgatgatggcgcggacgagcaccctgtagaacgtcggcggcatgctgctgctgctcagcaatggcgtggagacgaaggtcgggacgagcgcggcgcgctgcggcggcacgccgagcgtgatgaacccgagggagctcggcgacggcgggatgcagtacgagaacaccctgccgtactgtgtcgccgtctgctgaacgaaggactgcgcgccgccgccgagcgccagggtgccggagacgtcgaagctgaaggtgcttccccggtcggcgtgcgcgcacccgaagaggaagcccctgacgacgtcgtaggggcccagggtgaggtcgtcggagctgtacgtcccggtcgccgtggcgccgtcggtataggtgaagccaaactggcactgcacgttggcggagcagccgcggcggtaggggccgagccgcgcgcaggcggcggagctgcaggggacggcggagtacgtggtcgaggtggccgggtcgaacaggggatcccgctgcgggtgacacaccagcaacgggcatggctggcactgcacccatggcacgtcgctgcccgagtcgatgatcaccgtttgcctcaccgctgacgtgccatccggcgccgccgtcgttcctatcatcttctatatataacaaatcaatatatatataataataaatagtagtagagtgattaattaatttaagcacatataaatataatgtaaattcatttagatataaaggatatatatacattgagcgaggagatgggccttacatggcttactgcgccgacgccaacattactggcaggcaaataagtccccacatccgtggtttggccgtcccacgacgcccccgcaacgccgttgctggtgtcgccgccagcgagcctcttctggatgtaggcaacgcggtgttggtcggcatccagcatcttggcaatagaggtgacatcatcgtcggtgctgctgttgtccgtcccccgcgagtatgccggcgagcatggcccggaaacgaggtgcaagggtgcccaagtgctgttaagcgacgcctcgttacttggagcaactagagagagagatatatatccactccattagaggttatatatatatatatcaaaaactactccaacttaattaattaatccctgatggatccgtctctctatatatatcggctatatatataatttaagatatttatttcattacaaatcaaaatatatttatgtgtgacaactttgaaaaatatatatttacaatgctctcaggaacaataatttgaatttataaattaaaaccgtttacgtcgtttcagtttcatcggatagatatagatcagaagaatataatatttatacctttgtggccggagcaggaagcttttggtttcatggagctggttgctatcagcatataggcgccggcttcagcgtctccgccatgagcaacaagagtggagctacacaggacgagaagcacaaacactactgctacaaacggggtcat
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| CDS seq | atgaccccgtttgtagcagtagtgtttgtgcttctcgtcctgtgtagctccactcttgttgctcatggcggagacgctgaagccggcgcctatatgctgatagcaaccagctccatgaaaccaaaagcttcctgctccggccacaaagttgctccaagtaacgaggcgtcgcttaacagcacttgggcacccttgcacctcgtttccgggccatgctcgccggcatactcgcgggggacggacaacagcagcaccgacgatgatgtcacctctattgccaagatgctggatgccgaccaacaccgcgttgcctacatccagaagaggctcgctggcggcgacaccagcaacggcgttgcgggggcgtcgtgggacggccaaaccacggatgtggggacttatttgcctgccagtaatgttggcgtcggcgcagtaagccatgtaaggcccatctcctcgctcaatatgataggaacgacggcggcgccggatggcacgtcagcggtgaggcaaacggtgatcatcgactcgggcagcgacgtgccatgggtgcagtgccagccatgcccgttgctggtgtgtcacccgcagcgggatcccctgttcgacccggccacctcgaccacgtactccgccgtcccctgcagctccgccgcctgcgcgcggctcggcccctaccgccgcggctgctccgccaacgtgcagtgccagtttggcttcacctataccgacggcgccacggcgaccgggacgtacagctccgacgacctcaccctgggcccctacgacgtcgtcaggggcttcctcttcgggtgcgcgcacgccgaccggggaagcaccttcagcttcgacgtctccggcaccctggcgctcggcggcggcgcgcagtccttcgttcagcagacggcgacacagtacggcagggtgttctcgtactgcatcccgccgtcgccgagctccctcgggttcatcacgctcggcgtgccgccgcagcgcgccgcgctcgtcccgaccttcgtctccacgccattgctgagcagcagcagcatgccgccgacgttctacagggtgctcgtccgcgccatcatcgtggcggggcgccctctgcccgtgccacccaccgtcttctccgccagctctgtgatcgcctccaccatcgtcatctcgcggctgccgccgacggcgtaccaggcgctgcgcgcggcgttcaggagcgcgatgaccatgtaccggacggcgccgccggtgtccatcctcgacacgtgctacgacttcaccggcgtccgcagcatcaccctgcccagcatcgccctggtattcgacggcggggccaccgtcaacctcgacgcggcggggatcctgctccaaggctgcctcgccttcgcgcccaccgccaccgaccgcatgccagggttcatcggcaacgttcagcagcgcacgctggaggtggtgtacgacgtccccggcaaggccattcgattccggagcgccgcctgctaa
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| Protein seq | MTPFVAVVFVLLVLCSSTLVAHGGDAEAGAYMLIATSSMKPKASCSGHKVAPSNEASLNSTWAPLHLVSGPCSPAYSRGTDNSSTDDDVTSIAKMLDADQHRVAYIQKRLAGGDTSNGVAGASWDGQTTDVGTYLPASNVGVGAVSHVRPISSLNMIGTTAAPDGTSAVRQTVIIDSGSDVPWVQCQPCPLLVCHPQRDPLFDPATSTTYSAVPCSSAACARLGPYRRGCSANVQCQFGFTYTDGATATGTYSSDDLTLGPYDVVRGFLFGCAHADRGSTFSFDVSGTLALGGGAQSFVQQTATQYGRVFSYCIPPSPSSLGFITLGVPPQRAALVPTFVSTPLLSSSSMPPTFYRVLVRAIIVAGRPLPVPPTVFSASSVIASTIVISRLPPTAYQALRAAFRSAMTMYRTAPPVSILDTCYDFTGVRSITLPSIALVFDGGATVNLDAAGILLQGCLAFAPTATDRMPGFIGNVQQRTLEVVYDVPGKAIRFRSAAC |
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| Function | Aspartyl protease family protein At5g10770 [UniProtKB/Swiss-Prot:Q8S9J6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0001360 | OsLima_06g0001360.01 | Chr06 | 994912 | 996822 | - | NAM | ||
| CDS seq | atgaccccgtttgtagcagtagtgtttgtgcttctcgtcctgtgtagctccactcttgttgctcatggcggagacgctgaagccggcgcctatatgctgatagcaaccagctccatgaaaccaaaagcttcctgctccggccacaaagttgctccaagtaacgaggcgtcgcttaacagcacttgggcacccttgcacctcgtttccgggccatgctcgccggcatactcgcgggggacggacaacagcagcaccgacgatgatgtcacctctattgccaagatgctggatgccgaccaacaccgcgttgcctacatccagaagaggctcgctggcggcgacaccagcaacggcgttgcgggggcgtcgtgggacggccaaaccacggatgtggggacttatttgcctgccagtaatgttggcgtcggcgcagtaagccatgtaaggcccatctcctcgctcaatatgataggaacgacggcggcgccggatggcacgtcagcggtgaggcaaacggtgatcatcgactcgggcagcgacgtgccatgggtgcagtgccagccatgcccgttgctggtgtgtcacccgcagcgggatcccctgttcgacccggccacctcgaccacgtactccgccgtcccctgcagctccgccgcctgcgcgcggctcggcccctaccgccgcggctgctccgccaacgtgcagtgccagtttggcttcacctataccgacggcgccacggcgaccgggacgtacagctccgacgacctcaccctgggcccctacgacgtcgtcaggggcttcctcttcgggtgcgcgcacgccgaccggggaagcaccttcagcttcgacgtctccggcaccctggcgctcggcggcggcgcgcagtccttcgttcagcagacggcgacacagtacggcagggtgttctcgtactgcatcccgccgtcgccgagctccctcgggttcatcacgctcggcgtgccgccgcagcgcgccgcgctcgtcccgaccttcgtctccacgccattgctgagcagcagcagcatgccgccgacgttctacagggtgctcgtccgcgccatcatcgtggcggggcgccctctgcccgtgccacccaccgtcttctccgccagctctgtgatcgcctccaccatcgtcatctcgcggctgccgccgacggcgtaccaggcgctgcgcgcggcgttcaggagcgcgatgaccatgtaccggacggcgccgccggtgtccatcctcgacacgtgctacgacttcaccggcgtccgcagcatcaccctgcccagcatcgccctggtattcgacggcggggccaccgtcaacctcgacgcggcggggatcctgctccaaggctgcctcgccttcgcgcccaccgccaccgaccgcatgccagggttcatcggcaacgttcagcagcgcacgctggaggtggtgtacgacgtccccggcaaggccattcgattccggagcgccgcctgctaa
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| Protein seq | MTPFVAVVFVLLVLCSSTLVAHGGDAEAGAYMLIATSSMKPKASCSGHKVAPSNEASLNSTWAPLHLVSGPCSPAYSRGTDNSSTDDDVTSIAKMLDADQHRVAYIQKRLAGGDTSNGVAGASWDGQTTDVGTYLPASNVGVGAVSHVRPISSLNMIGTTAAPDGTSAVRQTVIIDSGSDVPWVQCQPCPLLVCHPQRDPLFDPATSTTYSAVPCSSAACARLGPYRRGCSANVQCQFGFTYTDGATATGTYSSDDLTLGPYDVVRGFLFGCAHADRGSTFSFDVSGTLALGGGAQSFVQQTATQYGRVFSYCIPPSPSSLGFITLGVPPQRAALVPTFVSTPLLSSSSMPPTFYRVLVRAIIVAGRPLPVPPTVFSASSVIASTIVISRLPPTAYQALRAAFRSAMTMYRTAPPVSILDTCYDFTGVRSITLPSIALVFDGGATVNLDAAGILLQGCLAFAPTATDRMPGFIGNVQQRTLEVVYDVPGKAIRFRSAAC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0118000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02730 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0118000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0001430 | RBH | 0.0 | 0.0 | 1.396319 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0001390 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0001350 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0001350 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0001370 | SBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0015000 | SBH | 1.3933465 | 0.036784 | 0.264347 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0001370 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0018700 | RBH | 0.2160625 | 0.073205 | 0.249292 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0001260 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0001370 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0001340 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0001380 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0001170 | SBH | 0.063889 | 5.983014 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G001300 | SBH | 0.0 | 0.0 | 3.963739 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0001350 | RBH | 0.0 | 0.0 | 0.411381 |
