Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0000480 | OGI:06000910 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:297761-300650 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaacaatcaggtaagcatcatatcattcatcactagtctcctcaactctcaaggaagctagctaggccatctaaaaatgcagtttacaccacaaacactttcaatcaaataaggcaaggagggcccattacaacacctatataattaactgacaccaaacatttttgtctttgaactcgtaacatgcaacagtaaaaatggctttcctataccaaactttggtttctaaagaaaagaaaaaaaaaactacgtatcactctgataaaaagatgcatcttatgtgactacatacagattatgcatttggtatgtttataatcctctctgtatttctgttcagcctattgttggttccactgaccactttcagactcagtggctgaagatgctgctgctactgcttctccttggatggtaaatggatcctccctcctcttctgcaatggtgagacaatggctatagggccagggtgtatatctgactgagcaagtgcttcttgatagagtggtgcttcacaatccgtcaattgctcccatgatgaaaatgtctgggacatgccccaattggtccatctcaattggggaacataagcatgagagacacttgttggtttgccagaaggataagcatctactccttgtgaatctggagcaaatccaaagcccacaaaatcctcccagtggttgcatattctaaggttgttcaacatcaaatggcagggttcctcggagtcttcgtctatgagaacatgaagagccactgcttcagctattgcagcaccttcatcatctagcctctgttgctcttcccttttctgctgccgtttcttctccagttctgaaataatagcagccgagtttgcaagtgctttctctaaccggcgccttttcttctccgcttgcttttggcgatccagctcatcttttgcatgcttctttttccctttcttcaacaccttgcctccctgattgcctccagccttatccatggaaaatgtgccaccttctcactatatgtgatgttcctatacaaatcaaagattcagaatcaaaagatacctcaatgatagattttattttaatgaagaagctattcaggcagtaatgaattcaagatgtaatacctaaatcaactcaggagtcaggactgaaagaatatactgtttcttctattgttaattttgcccataatttcttgctgcgcagtttttgccccttttcatagcacaacaaactcatatggatcttctcctgtattaaggaaataacaaagtgaggtactgactactgaactaatatatgaaggtacaaaatgcagatgctggagtaaagcaggagagcatacaaggtgattcttagcagtcaaaggaatatacacggggaataaaggccatcaagtacaacatatgtttgctgacaggcctaagatgagggtgatacattacttgttgaacctgaacgcaaagtcaagccaaaccatgttgaaaaaaaatggaacatttttttcaaaattaaagtttgatatgcttttggttttcggaatttttcgggaagagacagtggtatcttaaccctattgtcaactacaaatttcaataacatatatggagaacagaggaatataaataacaaaggcaaagaagatgctagcagccatgtactatgtgcaccagaaattataattagactaagaactaaagagttgcattcttagatataatatgcagaccacgaatatttagttcttatcattaaataacacatagctggagcccaagatcaaagattaatacttctagtcataggaaagtctacttttgtgtctcagatttaataaagaccaaaagattcatatcagacaggagctgtcttcctaagcccaacatcagactaaactccataaaactatagaagtgatcctgagtaactgcagttaatactaatattatttgtctcatcacttagcatgggaaaatgcagcctgaagatacaattcacagctgccttgcccgtgccaaagggtcctgattccacccacccggagcttgttggtcctccagggctccttccaagcataatacgcattaatcaccgccggatagtaggacccagcgcgacaagtttctggctttaattttcacagctactctaaatacccctggtgaattctgttgtgtatactttgtttggaaattggaaatatagacgggtcatagaaaacaagagtgcataggaactagctattcaaggagttagctacatactaaccaaaatttacaagtttgggcatccagaggataaatagttatgacaagacattccccctcatagcattaattggaaattgaacctaaatagtggagtcccatttttacctatttgatcgccaaagccaaaagtttcctaatagagtagacaaaatcaatttgtatctagcgtaaggctttcaaatcctcggaaataacctagatttacagatttgatcaatactactatatgcaaaaacaattaccaccactagtgttatcctggtacagttgaccggaaaaaaaagatggaaaattgaagcaattggcgtcccttgtccatctgagtaagaaacaagagagagaattgaggatgaaggattgggggaactcacccctatggacctatatgcgtcccagtggcggcggagaaggcggaggagggagagatccgttgggtgcgagtggagatccgggggggaggaggcgaagtcggcgagcggaggggggtcgagatccggcggcgacctagtgcgtcgcggcctcgcgggggaagagaagagaaggcggcgacggagggaggaaggaaggaatccgcgggcaccaaaccggatatcatcaattaatttccctccctccaatc
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| CDS seq | atggataaggctggaggcaatcagggaggcaaggtgttgaagaaagggaaaaagaagcatgcaaaagatgagctggatcgccaaaagcaagcggagaagaaaaggcgccggttagagaaagcacttgcaaactcggctgctattatttcagaactggagaagaaacggcagcagaaaagggaagagcaacagaggctagatgatgaaggtgctgcaatagctgaagcagtggctcttcatgttctcatagacgaagactccgaggaaccctgccatttgatgttgaacaaccttagaatatgcaaccactgggaggattttgtgggctttggatttgctccagattcacaaggagtagatgcttatccttctggcaaaccaacaagtgtctctcatgcttatgttccccaattgagatggaccaattggggcatgtcccagacattttcatcatgggagcaattgacggattgtgaagcaccactctatcaagaagcacttgctcagtcagatatacaccctggccctatagccattgtctcaccattgcagaagaggagggaggatccatttaccatccaaggagaagcagtagcagcagcatcttcagccactgagtctgaaagtggtcagtggaaccaacaatag
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| Protein seq | MDKAGGNQGGKVLKKGKKKHAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKRQQKREEQQRLDDEGAAIAEAVALHVLIDEDSEEPCHLMLNNLRICNHWEDFVGFGFAPDSQGVDAYPSGKPTSVSHAYVPQLRWTNWGMSQTFSSWEQLTDCEAPLYQEALAQSDIHPGPIAIVSPLQKRREDPFTIQGEAVAAASSATESESGQWNQQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0000480 | OsLima_06g0000480.01 | Chr06 | 297761 | 300650 | - | NAM | ||
| CDS seq | atggataaggctggaggcaatcagggaggcaaggtgttgaagaaagggaaaaagaagcatgcaaaagatgagctggatcgccaaaagcaagcggagaagaaaaggcgccggttagagaaagcacttgcaaactcggctgctattatttcagaactggagaagaaacggcagcagaaaagggaagagcaacagaggctagatgatgaaggtgctgcaatagctgaagcagtggctcttcatgttctcatagacgaagactccgaggaaccctgccatttgatgttgaacaaccttagaatatgcaaccactgggaggattttgtgggctttggatttgctccagattcacaaggagtagatgcttatccttctggcaaaccaacaagtgtctctcatgcttatgttccccaattgagatggaccaattggggcatgtcccagacattttcatcatgggagcaattgacggattgtgaagcaccactctatcaagaagcacttgctcagtcagatatacaccctggccctatagccattgtctcaccattgcagaagaggagggaggatccatttaccatccaaggagaagcagtagcagcagcatcttcagccactgagtctgaaagtggtcagtggaaccaacaatag
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| Protein seq | MDKAGGNQGGKVLKKGKKKHAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKRQQKREEQQRLDDEGAAIAEAVALHVLIDEDSEEPCHLMLNNLRICNHWEDFVGFGFAPDSQGVDAYPSGKPTSVSHAYVPQLRWTNWGMSQTFSSWEQLTDCEAPLYQEALAQSDIHPGPIAIVSPLQKRREDPFTIQGEAVAAASSATESESGQWNQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.392779 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0106900 | RBH | 3.515786 | 2.264190 | 6.042967 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g01770 | RBH | 2.155135 | 1.416355 | 1.410052 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0106900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0000510 | RBH | 1.370725 | 17.539276 | 12.712029 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0000510 | RBH | 0.307220 | 5.401868 | 2.600313 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0000490 | RBH | 5.416690 | 14.195026 | 14.571860 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0000490 | RBH | 0.785304 | 0.445196 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0000480 | RBH | 13.546204 | 17.546965 | 12.192131 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0005500 | RBH | 12.237308 | 15.0376405 | 17.779766 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0000440 | RBH | 1.226156 | 1.963639 | 1.683396 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0005700 | RBH | 19.9193065 | 32.333 | 16.317874 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0000370 | RBH | 1.041391 | 0.541518 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0000480 | RBH | 0.905203 | 21.563438 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0000490 | RBH | 4.782617 | 26.982054 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0000480 | RBH | 1.326997 | 1.360361 | 2.135589 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0000440 | RBH | 0.665882 | 10.621658 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G000460 | RBH | 0.862407 | 2.540933 | 3.511493 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0000470 | RBH | 1.691608 | 14.107967 | 6.600599 |
