Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0027920 | OGI:05078230 | 7/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:29965431-29969995 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaggtgaggtgcaggcccccatgagattgagcagcaaggaatccaaatcgaatctcaacagggaacttaaagacacggaaagaaagaaagctgaccttagcaggtgcagggagggaggatggcgcccggcggcggcgaggactgagcacgggcctccaaaccgtagcacatcgcgattggggatcgaacccaacctttttgccttctctcactcttcggggaattattaagcgtcgcgcatggggcgagcgaggtggcgatttttcgaaatagccctccggttcgccgtaattcggccgcagtcccccgcgaatagcacctgtgaggtgtacttttacgtaaaggctcttcgaaaagaaggatattacatgagaaggaggggaaaatcgcgcgttgggactgctgtgtgaaactagaaagactaggggctttttcgcaaagctccgcgcactaacccgcccccaaggccccaaccctagccgcctccgcccgcctctcctcctccctctcctctcacgccgccggcgccggcgcctccccaaccctagacgccgccccagtcccctcctccctctcgtcccacccgtgctctccctctccctctcacgccgccgccgccgcctcgaagcttcccctccccatggcgccgcgaggctacctggcggaggtggctctcctcacgtcggcctccgaggacctcgccgccgtGggccccggcgagagggaggggtggctggacgaccccgccgtgctccctcccctcgcgccgcgcgcgcgcgccctcgccgtcgccgttgcggcgcggtccgtgcacgcggttgccccggtcgccggaggaGgtggcagggtcacggtgaggcccgcgctggggcccgacgacggccggatctccgccgtggagtggatcccgctcgctggggaggaccccggggaggctggtGAgagagtggccgtcgccgtgggcacggacgccaggtggcttctgttatactctctcgccggcgatctgctgcacaagcaggttgctatgtgtgatcgatctcttctctctggatgttttgtcatagaatcatacaatataatgtttataagaggcctgcttaatgaacaccggaattatcaaaaaggtaaccagataaagtcagttccaaATatcgtttgtttgcacatgagaaagtcaatccaaagggcatgaatccatgaacagatgaacataccaatgaacttgtagatctgccacattgggcattcctagcattgtttgccacatccattttaacttgttttgcctaatttttttcattgacaaaagctgcagccatgtaaccaattaattcaggtttagtttcctgttagctttgagatatactgaaaaataacctgaccctaatgcatttaggcccactaatgaatgtatcctaggggcactgatgtgccctatttttcaaattcactgtcaaaataaaaaaaaatgtctttgttctatttttttgttatgttgatggtaaagatatgcttgcatttgtacataagttatttgtttaggaaggtatcactgagaaagtggcatttcaattacaggtatatatcattgtgtttttatgagtttatatatccacacacacttttgtttcttcagattttaataaatgcacaaacaaagtagatgcatggtttttacttattttcctgctcatcatgtactatcttttttacttccatgacaaaacctaactgctactcttcttttcatggctaatttatttgtttcgatgttcttagggaaatgttataggctgaaggaaaaatcttacgcaaatccatattggagttaatgcggcaaatttcttgattgaaaaaggatgcagtgactcctggaatttgttattttcttcagcaaggtataatgaccaaaagaccaaaagcacaattaccccgaccaggtcccaaagaacccttcttaccacctcagaacatgagtttcctccaaatgcacatttttttatgcaaactatgcatgtttgttgtatttcgtaacagcccgatgacgagctcatgagcgtgttgcataacctgccagacataaacatcacctgcaaggcacggcaggtcaagcttttaagccatcatagagtttggtgctattctgccaactagattcgtgcttggattggaggatggtatggtgctgcagcctccaggagttacacattttggtaatttatctattattttttatccttttggatatgcaaggctttgtatattagctaataagatataactaattgaagtagattgtcaatacattagctcattcatattctagtgacccgatggatttgaggcttgcattctaccggcaaagtaggtggtatgatattgtgattttgtttcatgtcaccatctgatttatagggaatgatgatgtggccttgcacaactataatcacaatatgtacacaacctggagcataatgaacatattgtgactatagttcttttctccttcggtatacctctttcactgatttttttcccttttcaaaggtgtttatagagaaacttaatgcttattttgccaaagccatctattataggaaaggtttgagagtacccagaaagagctatctatcTAtatatatatatatacagaatagaatgcaccatttccccaaaggaaagactcggcatcctagcgatcataattctcaaccatagagataatgagtatgaccaacaactcttgcaactggcagtttttacagaaatggaaatcttgcaggccatcatcttagcaatagaattccgagacttatatttccctttttacatatgaaagcaaaagaaagagcagtgaaattgattgctaattttaggttgtcactaacttatgtaagtttatttgtgaaattctaactcccagactattttcgaaatttatgtaagttatttctaaaatttgaaatttcattgctaatatcctAaaaatgtgcttactaatatgtgaccaccctgcaggcaacaaagcacaagttcatctataatctgtcatacaagtgttgctatctatttatatactgactacctactttattattcttgtatttgtgaacatacttctatatgtcaggtattgttcctgcgagtcttctagatgatcaacgtggctctttatgtagtactatgtatatgaaaactaggactctgtaagttcattcctttgcaatattatttcaaggccattagtatcatgcgtagatacaaattttctaattagtgcacatcaagtgtataaaggtcaagaaaggcaaggtcatgggtgtatggtcaaggttggtcactttttcatcttatttttatctcatgaatccaatttttggggcaaaccgatctctgggttgtcaaattagtaacaactgttccattaatcatccatccaatcgatagatttatgccaaacatttctttagctgtattgaagtttggactgggcctgctttagatcaggcttagtttgtgctgggctgcaagcttgtgttgtgttagcctctcagctttgggccagaccatatgagctccttttttctttcttgagtagacaccggcttgagatggtgttttgtagcccttatattgacaaattctttttttaacgaaattatattgacggattcttattcctttatactatgtggatagttgctgcacaTtttttttctccttcaaagttttaacatttaggaaaaaaaaattactactatcttctctattaatatatacatggcaaagcttttgctgtcctttaaaaaaAATactccctccgtttcgtaatgtaagtcattctagcatttcccacattcatattgatgttaatgaatatagacatatatatctatctagattcatgaacatcaatatgaatgtgggaaatgctagaatgacttacattgtgaaacggaggaagtactatgtatgctacatcagtatgtacatgactggatgggttgccatgcggatgaagatggcacattcatttgggtaaaatgacttgcatggccatcattagttgtgaggaagacttacattgctcttgccattcatttgggtaaaatggcttgcatggcctatttacaagattatgagccaaatgtggtttgctttgttgcaaatgaaaatatagtagttcgcaggctgcaatgtttcaccataacctgactaacctgcaaaggctttgatatgagcctaattgcttggtaacagattttctagtctaagctgaattgcattgggttactgtaacctgtactgaaacatgaagttaggtaccagctactgctattttccattagtacagacgatttacacttgcccagttaaaatcaaatgttatagcaataaacaaacaaagtgcagagttagcacggatttgtgaaggctagaaatttcttgcatcagtaggcactcacagctgcagtatgtcaacaggtgattttatcattttggctgaaccgagacctggtgcatcctctggtggtgaggtgagcctgtattttggtggcat
More
|
||||||||||
| CDS seq | atgccaccaaaatacaggctcacctcaccaccagaggatgcaccaggtctcggttcagccaaaatgataaaatcacctgttgacatactgcagctatcgccggcgagagagtataacagaagccacctggcgtccgtgcccacggcgacggccactctcTCaccagcctccccggggtcctccccagcgagcgggatccactccacggcggagatccggccgtcgtcgggccccagcgcgggcctcaccgtgaccctgccacCtcctccggcgaccggggcaaccgcgtgcacggaccgcgccgcaacggcgacggcgagggcgcgcgcgcgcggcgcgaggggagggagcacggcggggtcgtccagccacccctccctctcgccggggccCacggcggcgaggcccgtgctcagtcctcgccgccgccgggcgccatcctccctccctgcacctgctaaggtcagctttctttctttccgtgtctttaagttccctgttgagattcgatttggattccttgctgctcaatctcatgggggcctgcacctcacctga
More
|
||||||||||
| Protein seq | MPPKYRLTSPPEDAPGLGSAKMIKSPVDILQLSPAREYNRSHLASVPTATATLSPASPGSSPASGIHSTAEIRPSSGPSAGLTVTLPPPPATGATACTDRAATATARARARGARGGSTAGSSSHPSLSPGPTAARPVLSPRRRRAPSSLPAPAKVSFLSFRVFKFPVEIRFGFLAAQSHGGLHLT |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0027920 | OsLima_05g0027920.01 | Chr05 | 29965431 | 29969995 | - | NAM | ||
| CDS seq | atgccaccaaaatacaggctcacctcaccaccagaggatgcaccaggtctcggttcagccaaaatgataaaatcacctgttgacatactgcagctatcgccggcgagagagtataacagaagccacctggcgtccgtgcccacggcgacggccactctcTCaccagcctccccggggtcctccccagcgagcgggatccactccacggcggagatccggccgtcgtcgggccccagcgcgggcctcaccgtgaccctgccacCtcctccggcgaccggggcaaccgcgtgcacggaccgcgccgcaacggcgacggcgagggcgcgcgcgcgcggcgcgaggggagggagcacggcggggtcgtccagccacccctccctctcgccggggccCacggcggcgaggcccgtgctcagtcctcgccgccgccgggcgccatcctccctccctgcacctgctaaggtcagctttctttctttccgtgtctttaagttccctgttgagattcgatttggattccttgctgctcaatctcatgggggcctgcacctcacctga
More
|
|||||||
| Protein seq | MPPKYRLTSPPEDAPGLGSAKMIKSPVDILQLSPAREYNRSHLASVPTATATLSPASPGSSPASGIHSTAEIRPSSGPSAGLTVTLPPPPATGATACTDRAATATARARARGARGGSTAGSSSHPSLSPGPTAARPVLSPRRRRAPSSLPAPAKVSFLSFRVFKFPVEIRFGFLAAQSHGGLHLT |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.117556 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027800 | RBH | 0.000000 | 0.000000 | 0.289089 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027800 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028040 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028060 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028090 | RBH | 0.000000 | 1.164875 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027590 | RBH | 0.398078 | 3.591871 | 4.356534 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028070 | RBH | 0.000000 | 0.000000 | 0.487710 |
