Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0027450 | OGI:05077420 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:29672125-29672948 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acatcacaaatcaagctcacacacgcagcgaaatccaagaagagagaagcagccatccatggcgcccaaggcggagaagaagccggcggcgaagaagcccgcggaggaggagcccgcggcggagaaggccccggcggcggggaagaagcccaaggcggagaagcggctccccgcggggaagggcgagaagggcggcgccggcgaggggaagaaggccgggaggaagaaggggaagaagagcgtggagacctacaagatctacatcttcaaggttctcaagcaggtccaccccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccgccgaggccgccaagctcgcccgctacaacaagaagcccaccatcacctcccgcgagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggccgtcaccaagttcacctccgcttaggcttttcctctgtcctcctgtctcgtcttgtcgctgctaatgctagttgtagttgtggtaggttgcagatttggatagtttggtactgtggtgtatttaccctggctattgactatcttggtggataaggaacactatcattgttattatggagaaatagtagttatgctactttaatcagcttgcctttgtctgttcttggtttgtttcctcgttgcatatgttatttgttcgtctggtcttgttcatcgtgcctctatcgatatgtgcttgtctgaatttcactgaataggtggatcttcgctaa
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| CDS seq | atggcgcccaaggcggagaagaagccggcggcgaagaagcccgcggaggaggagcccgcggcggagaaggccccggcggcggggaagaagcccaaggcggagaagcggctccccgcggggaagggcgagaagggcggcgccggcgaggggaagaaggccgggaggaagaaggggaagaagagcgtggagacctacaagatctacatcttcaaggttctcaagcaggtccaccccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccgccgaggccgccaagctcgcccgctacaacaagaagcccaccatcacctcccgcgagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggccgtcaccaagttcacctccgcttag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAPAAGKKPKAEKRLPAGKGEKGGAGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
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| Function | Histone H2B.9 [UniProtKB/Swiss-Prot:Q6F362] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0027450 | OsLima_05g0027450.01 | Chr05 | 29672125 | 29672948 | + | NAM | ||
| CDS seq | atggcgcccaaggcggagaagaagccggcggcgaagaagcccgcggaggaggagcccgcggcggagaaggccccggcggcggggaagaagcccaaggcggagaagcggctccccgcggggaagggcgagaagggcggcgccggcgaggggaagaaggccgggaggaagaaggggaagaagagcgtggagacctacaagatctacatcttcaaggttctcaagcaggtccaccccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccgccgaggccgccaagctcgcccgctacaacaagaagcccaccatcacctcccgcgagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggccgtcaccaagttcacctccgcttag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAPAAGKKPKAEKRLPAGKGEKGGAGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.297956 | 2.505640 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0574300 | RBH | 4.434542 | 5.917008 | 11.624876 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g49860 | RBH | 2.490585 | 3.305159 | 2.485271 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0574300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0027840 | RBH | 2.567000 | 53.938324 | 3.463512 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0027630 | RBH | 0.934395 | 18.552361 | 6.168053 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0027660 | RBH | 4.112490 | 41.104492 | 11.233268 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0027700 | RBH | 0.502366 | 3.715814 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0027610 | RBH | 2.489195 | 66.027367 | 24.721922 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0446400 | RBH | 171.275711 | 82.5232315 | 69.1120645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027300 | RBH | 0.732720 | 7.897796 | 1.419421 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0459200 | RBH | 124.8728635 | 18.406751 | 487.1382445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003500 | SBH | 0.241118 | 1.128809 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027330 | RBH | 0.881043 | 103.992043 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0027560 | RBH | 8.567225 | 99.211998 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027570 | RBH | 1.953636 | 8.280454 | 2.080089 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0019790 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027110 | RBH | 1.903135 | 29.132761 | 10.207881 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027570 | RBH | 4.852616 | 80.504829 | 14.249122 |
