Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0026910 | OGI:05076370 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:29324928-29326522 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaaccaccagagcttctgaaagagcaagaacattcaaagctaagacacagcaagatctttagcattagagctttcagtagttcagtgtcttaccaaggccactcttgaagatgtctgggtcccggagctcctcccccaactcgaagtccgagtggagcaggaaggagaacaagatgttcgaggaggcgctcgcctactacggcgaggacacgcccaaccggtgggacaaggtggccagcgccatgggaggcatcaagtccgctgaggagatccgctgccactacgaagacctcaccgatgacgtcaagacgatcgagtccGggcgagtgcagttccccaagtacaagacgcagggatactggacctgaggtaaaaaaaaaaaaccatgcatgcaacctctcaaccaaacctgagctgcAAaaaagaaaaaagataacttgcctccaataagttttcagaattacagtcgagtagaagcatggtagtcataactaAGTCagtgattgtttacaagcttactaaatgcaatgatgaagaATagaccatgtatatttggctgtttatagatggttcatggtttaacttgaagatacaacatgcagggtttagtactttatattctttccatgttgccaccatgcatgactggcatcataagcatacttagacaaagagtcagtaatttatgagtgtctttgtaatctgacgccctctaatcacgtgggatctaatcctagcgctatcagaataataccttccaaaagaaaagctttggtcttagagaagtacagtctatcacctcgtgcttccagcttacagccgacatgcacttctcatagtcctttacaagtcacagctaagtgccaaaaggttgatctcccatgctttttgagagggtgctggtgggtatgctttgagtgggttcttgttcttgttgttttgttttctttttgagttggcaattttgcaatcgcaacactttacaaatataaaaggcagctggttgcaagctagagtttgcaatGAgatcaacaaaagtacatcatacaagtttaaaaaaagcgaaagtactaggtctattttgctagtcttggttgagttccaaactctttccgtacctatcagcctaacttgatgtctagttgaacaaagcaaccaaaagagagaaaagaagcagctctctcctatcaggcatccaaaagcaatatatagttcatctgagtaaagttttttgagctccgataaacttacagtacattatatttttcctttttcccaggatgaaccattggaagctccgatagacagaagatgaagttgtataaactagatccctaagaaagacttgctcTaggaggaaccaaattaagtaatccagcattgcttagagaataaaggaagagaaggggtgtgtatgtatataGTAttgggttatgagcaaGgttaagtccccatgctgttgtagattctcgtctacattcgtcaactgcagtattcattaactctgtgaactaaattatgaagtaacattgtgatgtaaactcatgtgtttgtccaattataaaatgttatgttcgattgcattctgttgcccc
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| CDS seq | atgtctgggtcccggagctcctcccccaactcgaagtccgagtggagcaggaaggagaacaagatgttcgaggaggcgctcgcctactacggcgaggacacgcccaaccggtgggacaaggtggccagcgccatgggaggcatcaagtccgctgaggagatccgctgccactacgaagacctcaccgatgacgtcaagacgatcgagtccGggcgagtgcagttccccaagtacaagacgcagggatactggacctga |
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| Protein seq | MSGSRSSSPNSKSEWSRKENKMFEEALAYYGEDTPNRWDKVASAMGGIKSAEEIRCHYEDLTDDVKTIESGRVQFPKYKTQGYWT |
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| Function | Protein RADIALIS-like 3 [UniProtKB/Swiss-Prot:Q6NNN0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0026910 | OsLima_05g0026910.01 | Chr05 | 29325038 | 29325295 | + | NAM | ||
| CDS seq | atgtctgggtcccggagctcctcccccaactcgaagtccgagtggagcaggaaggagaacaagatgttcgaggaggcgctcgcctactacggcgaggacacgcccaaccggtgggacaaggtggccagcgccatgggaggcatcaagtccgctgaggagatccgctgccactacgaagacctcaccgatgacgtcaagacgatcgagtccGggcgagtgcagttccccaagtacaagacgcagggatactggacctga
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| Protein seq | MSGSRSSSPNSKSEWSRKENKMFEEALAYYGEDTPNRWDKVASAMGGIKSAEEIRCHYEDLTDDVKTIESGRVQFPKYKTQGYWT |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0026910 | OsLima_05g0026910.02 | Chr05 | 29324928 | 29326522 | + | IsoSeq | ||
| CDS seq | atgacgtcaagacgatcgagtccGggcgagtgcagttccccaagtacaagacgcagggatactggacctgaggatgaaccattggaagctccgatagacaga |
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| Protein seq | MTSRRSSPGECSSPSTRRRDTGPEDEPLEAPIDR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.936232 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0567600 | RBH | 2.194983 | 1.380934 | 4.464252 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g49240 | RBH | 1.518511 | 0.942464 | 1.175624 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0567600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0027300 | RBH | 0.000000 | 0.000000 | 1.825407 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0027090 | RBH | 0.000000 | 0.0 | 2.681306 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0027080 | RBH | 0.000000 | 0.0 | 17.134268 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0027140 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0027070 | RBH | 0.000000 | 0.000000 | 1.739625 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0440100 | RBH | 2.097439 | 4.427147 | 1.0185095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0026730 | RBH | 0.000000 | 0.000000 | 1.739074 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0452000 | RBH | 1.5449405 | 5.0255505 | 6.750518 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0026770 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0026970 | RBH | 3.349927 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027020 | RBH | 0.650934 | 0.0 | 2.067327 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0027040 | RBH | 0.087586 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G026500 | RBH | 0.000000 | 0.000000 | 2.432585 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027040 | RBH | 2.547159 | 0.000000 | 7.939994 |
